Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003751.1 Hibiscus syriacus cultivar Beakdansim tig00008029_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95726

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
347--408
29
2.1
29
96
0
115
17
33
32
16
1.92
7042--7075
14
2.4
14
85
0
50
29
5
0
64
1.17
7371--7444
21
3.5
21
72
17
64
27
0
22
50
1.50
7388--7444
14
4.1
14
76
13
55
28
0
22
49
1.50
7595--7649
25
2.2
26
83
9
69
47
3
5
43
1.44
7712--7760
21
2.4
22
80
13
59
10
4
6
79
1.03
12590--12640
25
2.0
26
84
3
68
41
1
5
50
1.37
16744--16967
64
3.5
64
81
4
213
33
20
18
27
1.96
17481--17565
16
5.4
16
64
25
56
38
12
16
31
1.87
17477--17698
31
7.2
31
96
0
408
38
11
15
34
1.84
28735--28787
20
2.7
19
88
8
79
16
30
24
28
1.97
28801--28864
22
2.9
22
97
0
119
20
46
23
9
1.79
28818--28858
5
7.8
5
84
10
55
19
53
21
4
1.63
28783--28831
17
2.9
17
90
0
80
22
46
20
10
1.80
28855--28885
7
4.4
7
91
0
53
16
25
29
29
1.96
29755--29878
63
2.0
63
82
6
153
16
28
29
25
1.97
36061--36130
9
7.3
9
76
12
68
14
27
28
30
1.95
36060--36098
21
1.9
21
94
5
71
15
25
25
33
1.95
36061--36130
30
2.4
28
85
4
86
14
27
28
30
1.95
36061--36130
19
3.7
18
81
11
77
14
27
28
30
1.95
36127--36169
22
2.0
22
95
0
77
18
46
23
11
1.82
36163--36200
7
5.4
7
100
0
76
13
26
28
31
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37076--37199
63
2.0
63
82
6
153
16
28
29
25
1.97
38188--38219
15
2.2
15
94
5
57
50
0
0
50
1.00
38130--38233
50
2.2
46
79
10
111
53
1
0
43
1.18
39614--39659
21
2.2
21
88
0
65
36
30
17
15
1.91
39693--39742
19
2.5
21
77
12
59
16
22
28
34
1.95
42301--42402
3
33.0
3
86
5
141
37
0
0
61
1.03
44458--44509
20
2.6
21
76
11
56
26
7
0
65
1.20
46122--46174
14
3.7
14
85
5
70
22
13
9
54
1.67
46213--46272
27
2.3
26
82
2
75
21
11
8
58
1.59
48227--48270
6
7.3
6
87
7
54
79
0
20
0
0.73
50492--50756
83
3.2
83
95
1
460
27
13
21
36
1.92
50670--50913
105
2.3
105
100
0
488
30
13
21
34
1.92
53331--53385
22
2.5
22
84
0
74
32
14
16
36
1.89
54055--54342
76
3.8
76
97
0
542
21
19
21
37
1.95
54304--54373
31
2.3
31
97
0
131
22
17
21
38
1.93
54228--54449
107
2.1
107
97
1
419
22
18
21
37
1.94
54152--54719
183
3.1
183
87
6
739
22
19
21
36
1.95
54335--54599
76
3.5
76
97
1
491
22
19
21
36
1.95
54562--54629
30
2.3
30
97
0
127
23
17
22
36
1.94
54487--54710
105
2.1
106
95
0
405
23
18
21
36
1.95
54592--54750
76
2.1
76
96
1
293
20
18
22
37
1.94
54881--54972
3
30.0
3
78
10
89
40
0
1
58
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54883--54972
33
2.9
30
80
15
103
40
0
1
58
1.05
58105--58142
18
2.2
18
85
4
51
31
2
2
63
1.22
58115--58148
18
1.9
17
94
5
59
29
0
2
67
1.05
62500--62560
30
2.0
30
96
0
113
22
8
16
52
1.70
62824--62881
24
2.6
23
75
20
59
55
0
1
43
1.10
63440--63493
12
4.4
12
77
9
56
50
0
0
50
1.00
63677--63731
23
2.4
21
77
16
56
52
1
0
45
1.11
63692--63739
23
2.2
23
85
7
64
47
0
0
52
1.00
63768--63836
29
2.2
33
82
14
85
42
1
4
52
1.30
63857--63906
17
2.7
19
75
9
50
52
2
0
46
1.12
67825--67879
27
2.0
27
96
0
101
20
14
25
40
1.90
68070--68105
17
2.1
17
100
0
72
16
0
41
41
1.48
68243--68348
30
3.5
30
87
5
142
38
0
14
47
1.44
68290--68344
15
3.6
16
70
20
55
41
0
14
43
1.45
68401--68434
15
2.2
16
94
5
61
38
0
5
55
1.24
70572--70620
25
2.0
25
100
0
98
44
16
0
38
1.48
70573--70620
14
3.6
14
83
16
75
45
16
0
37
1.48
70588--70889
60
5.2
60
88
8
444
46
13
0
40
1.43
70642--70793
21
7.5
22
66
22
75
44
15
0
40
1.46
70588--71438
120
7.6
120
81
14
1056
46
12
0
40
1.42
70922--71167
60
4.1
60
94
0
395
46
13
0
40
1.42
70877--71136
21
12.4
20
64
22
81
46
12
0
40
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71099--71314
49
4.4
49
96
1
400
46
12
0
41
1.42
71298--71438
21
7.0
21
64
20
68
45
14
0
40
1.45
71249--71438
60
3.2
60
96
0
346
45
13
0
40
1.44
74281--74341
26
2.4
24
76
15
59
42
1
6
49
1.38
75136--75184
21
2.3
21
85
3
71
53
16
0
30
1.43
75689--75715
13
2.1
13
100
0
54
22
37
18
22
1.95
75695--75777
29
2.9
29
96
0
148
16
37
26
19
1.93
77415--77451
11
3.4
11
96
0
65
18
29
27
24
1.98
77813--77871
29
2.0
30
86
3
84
49
15
15
20
1.80
78657--78892
102
2.3
103
80
3
287
36
12
14
36
1.84
78827--79035
99
2.1
100
80
8
239
41
8
11
37
1.73
79319--79743
190
2.3
186
80
8
461
33
15
10
40
1.82
79900--80246
43
8.1
42
81
6
324
33
21
22
23
1.98
79893--80244
128
2.7
125
79
7
307
34
21
21
23
1.97
79939--80246
85
3.6
84
82
8
286
34
21
22
21
1.97
84496--84888
41
9.5
41
79
4
367
35
18
18
28
1.94
84496--84888
84
4.7
84
82
2
436
35
18
18
28
1.94
84496--84881
125
3.1
124
80
5
438
34
18
18
28
1.95
84496--84888
166
2.4
166
87
2
556
35
18
18
28
1.94
91244--91282
17
2.3
17
95
0
69
25
20
7
46
1.77

Tables:   1

The End!