genome.fa.s3752.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003752.1 Hibiscus syriacus cultivar Beakdansim tig00008030_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153864

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
714--754	21	1.9	22	90	5	66	51	7	4	36	1.51
719--760	21	2.1	20	82	8	50	54	7	4	33	1.49
1332--1367	16	2.4	15	90	9	56	86	0	2	11	0.68
4107--4133	3	9.0	3	100	0	54	33	0	0	66	0.92
13613--13652	21	1.9	21	94	0	71	32	10	7	50	1.64
17284--17326	23	1.9	22	85	4	59	48	2	4	44	1.36
20928--21147	113	1.9	113	93	2	379	28	12	10	49	1.73
24417--24554	59	2.6	52	80	14	163	19	14	27	38	1.91
24448--24568	59	2.1	59	93	0	206	23	14	23	37	1.93
25905--25959	10	5.6	10	75	8	51	12	25	27	34	1.92
29066--29139	39	1.9	38	88	2	112	17	25	28	28	1.98
29067--29145	10	8.3	9	79	8	77	16	27	27	27	1.97
29066--29139	19	3.9	18	86	10	94	17	25	28	28	1.98
29143--29188	19	2.4	19	92	0	74	23	52	17	6	1.68
30661--30694	2	16.5	2	87	6	50	50	2	2	44	1.32
31681--31742	26	2.4	26	83	0	70	48	1	32	17	1.57
40339--40364	2	13.0	2	100	0	52	50	0	0	50	1.00
40919--40962	21	2.1	21	83	8	54	59	0	2	38	1.10
43621--43698	2	39.0	2	100	0	156	50	0	0	50	1.00
48753--48831	36	2.2	36	95	2	142	56	6	10	26	1.56
50321--50376	28	2.0	28	86	10	80	50	0	3	46	1.19
50753--50798	19	2.3	20	81	7	58	28	28	17	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50877--50969	21	4.6	20	78	4	96	38	18	24	18	1.92
50874--50969	41	2.3	41	98	0	183	39	17	23	18	1.92
50877--50969	20	4.6	20	78	4	96	38	18	24	18	1.92
51001--51051	20	2.5	20	93	0	84	27	29	19	23	1.98
51555--51619	19	3.4	19	84	2	76	44	26	18	10	1.82
51615--51692	19	4.0	19	91	3	120	11	19	20	48	1.79
51615--51692	39	2.0	39	92	5	131	11	19	20	48	1.79
53531--53653	42	2.9	42	80	2	122	22	36	17	22	1.95
53587--53653	21	3.2	21	66	6	55	23	35	20	19	1.95
55009--55044	14	2.6	14	95	0	63	30	0	25	44	1.54
55223--55289	19	3.8	19	72	22	74	13	22	17	46	1.83
57582--57606	12	2.1	12	100	0	50	0	28	0	72	0.86
59082--59118	14	2.6	14	86	0	56	48	21	0	29	1.50
59671--59707	14	2.6	14	86	0	56	48	21	0	29	1.50
61561--61627	19	3.5	19	83	4	89	37	23	23	14	1.93
61616--61673	14	3.9	14	79	16	71	48	25	17	8	1.75
61600--61678	32	2.4	33	95	2	142	46	24	18	10	1.80
61690--61749	18	3.5	18	73	19	65	10	16	23	50	1.75
61701--61764	14	4.4	14	80	16	76	9	15	25	50	1.74
61690--61780	32	2.8	33	93	3	157	10	17	23	48	1.79
61685--61780	14	5.6	17	70	21	69	11	18	22	46	1.81
61765--61819	20	2.8	19	83	8	65	16	23	23	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62292--62336	18	2.5	18	85	0	63	15	15	42	26	1.87
63655--63708	20	2.8	20	80	2	65	48	22	16	12	1.80
63942--63985	22	2.0	22	95	0	79	18	15	45	20	1.85
64173--64266	20	4.7	20	80	2	89	23	18	24	34	1.96
64193--64328	41	3.3	42	78	5	118	20	20	20	38	1.94
64153--64267	20	5.7	20	78	5	88	23	17	23	35	1.95
64256--64348	21	4.6	20	79	4	105	18	23	18	39	1.92
64256--64351	41	2.3	41	96	0	174	18	22	17	40	1.91
65304--65349	2	23.0	2	100	0	92	50	0	0	50	1.00
91674--91850	88	2.0	88	96	0	327	22	18	19	40	1.92
91694--91873	88	2.0	87	88	5	245	24	17	21	37	1.94
97861--98919	353	3.0	353	99	0	2093	39	18	18	22	1.92
99785--99834	21	2.4	21	76	6	57	24	26	16	34	1.95
99827--99875	21	2.4	21	86	3	64	40	16	22	20	1.91
99885--99938	20	2.7	20	82	2	54	20	22	18	38	1.93
99938--99982	20	2.2	20	84	7	56	33	22	20	24	1.97
100537--100581	19	2.4	19	92	0	72	48	26	15	8	1.74
100582--100645	34	1.9	34	90	3	103	10	25	21	42	1.85
100577--100670	20	5.1	19	73	17	81	12	24	19	43	1.85
102763--102851	42	2.1	42	80	0	106	21	37	16	24	1.94
103800--103891	20	4.6	20	73	2	76	39	21	18	20	1.93
104101--104152	20	2.6	20	87	0	77	42	23	23	11	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104198--104246	19	2.6	19	93	0	89	16	20	14	48	1.80
106285--106339	20	2.7	21	80	5	76	38	21	23	16	1.93
106343--106397	14	3.6	14	77	17	65	49	23	16	10	1.77
106326--106415	32	2.8	33	93	3	155	45	24	17	12	1.83
106440--106483	20	2.2	20	92	4	72	20	25	18	36	1.95
106976--107020	18	2.5	18	88	0	72	13	15	44	26	1.83
108341--108383	20	2.2	20	86	0	59	48	20	18	11	1.79
108351--108423	20	3.7	20	94	0	119	35	26	19	19	1.95
108660--108709	22	2.4	21	81	15	59	22	12	42	24	1.87
108668--108711	22	2.0	22	91	8	72	18	13	45	22	1.84
108900--108951	20	2.6	20	93	0	86	25	21	28	25	1.99
108879--108989	20	5.4	20	76	9	82	23	18	24	34	1.96
108920--109014	41	2.3	41	81	3	111	20	18	23	37	1.94
108982--109033	20	2.5	20	81	3	59	17	21	19	42	1.89
109064--109104	21	2.0	21	85	0	55	34	29	17	19	1.94
109111--109156	19	2.3	20	85	7	67	23	17	30	28	1.97
114996--115040	22	2.0	22	86	4	63	31	33	26	8	1.87
116041--116115	31	2.4	31	86	0	96	30	17	22	29	1.97
116102--116174	30	2.4	30	88	0	101	21	21	26	30	1.99
119501--119545	21	2.1	21	87	0	63	31	28	24	15	1.96
119574--119618	22	2.0	22	86	4	63	31	33	26	8	1.87
120589--120712	31	4.0	31	80	7	135	29	18	20	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127899--127950	25	2.1	25	96	0	95	15	9	15	59	1.60
130218--130256	17	2.4	17	95	4	71	51	5	0	43	1.24
133171--133217	12	3.9	12	82	0	58	55	0	21	23	1.44
137960--138048	42	2.1	43	83	4	110	37	6	7	48	1.59

Tables:   1

The End!