Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003753.1 Hibiscus syriacus cultivar Beakdansim tig00008032_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97658

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
707--806
41
2.5
40
86
4
139
21
17
23
39
1.92
711--780
21
3.4
21
72
4
70
20
17
25
37
1.94
1564--1651
19
4.5
19
76
8
95
42
20
18
19
1.90
1636--1720
41
2.0
41
84
6
109
40
22
18
18
1.92
2477--2599
42
2.9
42
78
7
124
23
17
35
22
1.95
2513--2591
21
3.8
21
75
6
79
21
17
40
20
1.91
3072--3114
19
2.2
19
87
4
59
48
25
13
11
1.77
3101--3167
20
3.3
20
91
0
107
35
25
20
17
1.95
3174--3212
19
2.0
20
85
5
53
51
17
15
15
1.77
3284--3350
19
3.5
20
85
6
93
17
22
23
35
1.95
5244--5287
20
2.2
20
87
0
61
36
25
18
20
1.95
5507--5562
26
2.2
26
96
0
103
48
14
3
33
1.61
5679--5736
22
2.6
22
91
0
98
17
18
44
18
1.87
5880--5928
21
2.3
21
92
0
80
14
14
24
46
1.81
5916--5987
20
3.6
20
70
7
65
26
19
25
29
1.99
8127--8168
15
2.7
15
75
17
50
42
2
2
52
1.27
8681--8734
27
2.0
27
81
3
63
35
0
5
59
1.21
15362--15391
2
15.0
2
100
0
60
50
0
0
50
1.00
15578--15622
21
2.1
21
100
0
90
35
4
17
42
1.70
17604--17666
2
31.5
2
100
0
126
50
0
0
49
1.00
20442--20484
17
2.5
17
81
7
52
55
2
2
39
1.25
21677--21725
18
2.5
21
81
15
61
28
20
18
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21757--21857
20
4.8
20
66
20
71
29
25
19
24
1.99
21715--21856
65
2.2
65
98
0
275
32
23
19
25
1.97
27131--27336
16
12.8
16
67
10
87
14
16
24
44
1.85
27281--27347
32
2.1
32
83
5
82
11
16
23
47
1.80
36660--36704
20
2.3
19
80
3
54
48
2
2
46
1.26
36733--36773
11
3.9
11
81
6
50
51
0
0
48
1.00
37197--37224
5
5.6
5
100
0
56
60
0
0
39
0.97
42430--42457
2
14.0
2
100
0
56
50
0
0
50
1.00
51100--51133
14
2.4
14
100
0
68
47
14
0
38
1.45
52090--52230
64
2.2
63
82
7
169
25
24
18
31
1.97
54004--54376
123
3.0
123
96
0
665
22
24
25
27
2.00
56637--56675
21
1.9
21
89
5
62
15
17
5
61
1.51
63434--63465
15
2.1
15
100
0
64
50
18
25
6
1.70
67122--67194
33
2.2
33
82
0
83
23
24
26
26
2.00
89158--89190
2
16.5
2
100
0
66
0
48
0
51
1.00
97163--97194
9
3.6
9
95
0
55
15
21
12
50
1.77

Tables:   1

The End!