genome.fa.s3754.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003754.1 Hibiscus syriacus cultivar Beakdansim tig00008038_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63295

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4767--4832	33	2.0	34	90	3	107	24	13	22	39	1.90
8028--8201	64	2.7	63	80	13	194	30	18	22	28	1.98
8048--8201	64	2.4	64	87	6	215	31	18	20	29	1.97
8160--8197	18	2.2	18	85	4	51	34	21	21	23	1.97
10604--10701	21	4.4	22	73	19	80	29	20	22	27	1.98
10604--10701	45	2.2	44	84	12	121	29	20	22	27	1.98
16577--16645	18	3.8	18	96	0	129	27	17	30	24	1.97
16472--16609	64	2.2	64	86	5	190	31	16	21	30	1.96
17168--17255	14	6.2	14	81	17	110	44	0	11	44	1.40
17171--17232	32	1.9	32	96	0	115	43	0	11	45	1.40
17157--17250	46	2.1	44	88	7	136	42	0	9	47	1.36
17182--17255	11	6.5	11	77	14	55	43	0	12	44	1.41
17483--17541	11	4.8	12	76	16	50	44	3	6	45	1.47
17497--17545	24	2.0	24	88	0	71	46	2	4	46	1.33
17504--17545	13	3.4	13	77	12	52	45	2	4	47	1.36
19054--19149	24	3.9	24	66	15	70	42	9	3	44	1.52
19406--19450	14	3.2	14	96	0	81	42	11	0	46	1.39
19439--19489	24	2.1	24	89	7	77	56	0	0	43	0.99
21659--21725	31	2.2	31	83	0	80	31	23	10	34	1.89
21886--21960	10	6.7	10	73	21	60	13	12	20	54	1.70
21885--21970	24	3.6	24	91	0	136	13	12	18	54	1.70
23027--23087	16	3.8	16	95	0	113	8	13	22	55	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23843--23930	40	2.2	41	83	6	108	46	4	3	45	1.40
27046--27115	35	2.0	35	100	0	140	34	20	14	31	1.92
32047--32130	37	2.3	38	87	6	120	33	4	19	42	1.72
36646--36706	21	3.2	21	65	29	64	31	4	21	42	1.74
36638--36756	35	3.3	37	88	8	174	31	5	19	43	1.72
38456--38515	25	2.4	25	88	2	84	55	1	1	41	1.20
38424--38525	30	3.6	29	73	21	76	55	1	2	39	1.26
38546--38580	15	2.2	17	90	10	56	48	0	5	45	1.26
38568--38670	27	3.6	27	78	11	107	54	0	9	34	1.40
38564--38670	30	3.7	29	79	13	123	55	0	9	34	1.39
40540--40600	21	2.9	21	78	4	70	62	0	3	34	1.12
40561--40618	28	2.0	29	86	3	82	58	0	3	37	1.15
43774--43826	23	2.3	23	80	0	70	32	24	22	20	1.98
44592--44650	2	29.5	2	100	0	118	49	0	0	50	1.00
47317--47360	20	2.1	22	87	8	65	65	0	20	13	1.26
53545--53789	134	1.8	134	88	1	375	33	18	12	35	1.88
62556--62831	36	7.8	36	89	4	416	18	26	24	30	1.98
62556--62832	71	3.9	72	89	4	402	18	26	24	30	1.98

Tables:   1

The End!