genome.fa.s3755.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003755.1 Hibiscus syriacus cultivar Beakdansim tig00008047_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138618

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717--750	16	2.1	17	94	5	61	41	5	17	35	1.74
4710--4888	54	3.3	54	85	3	216	23	24	26	25	2.00
5241--5314	38	1.9	38	88	0	112	27	9	12	51	1.70
7021--7054	18	1.9	17	88	5	50	32	2	0	64	1.08
8771--8818	18	2.5	20	76	6	55	39	2	2	56	1.23
24381--24419	8	5.0	8	81	6	53	33	0	28	38	1.57
24487--25117	128	4.9	128	97	0	1208	22	23	19	33	1.97
25508--25607	33	3.0	34	83	2	139	39	3	4	54	1.35
26136--26223	31	2.7	31	80	5	95	59	2	0	38	1.10
26136--26214	34	2.4	33	83	6	99	60	1	0	37	1.05
26169--26244	33	2.3	34	84	8	95	64	5	0	30	1.15
27326--27397	33	2.2	32	85	7	99	16	38	25	19	1.92
30282--30311	13	2.3	13	94	0	51	36	0	3	60	1.14
35272--35316	21	2.1	21	95	0	81	24	20	17	37	1.93
35345--35432	20	4.3	20	82	2	113	44	23	11	20	1.84
35556--35598	22	2.0	22	95	0	77	25	44	11	18	1.84
35547--35610	22	2.6	25	76	19	71	21	43	9	25	1.82
35947--35991	19	2.3	19	80	3	54	53	26	11	8	1.65
38040--38138	42	2.4	42	78	13	105	24	29	21	25	1.99
39577--39610	14	2.4	14	100	0	68	32	0	20	47	1.51
39520--39676	80	2.0	79	93	2	271	31	1	17	49	1.55
40133--40180	12	4.0	12	83	0	60	16	0	25	58	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40140--40180	6	6.8	6	94	0	64	17	0	21	60	1.35
40130--40180	18	2.8	18	81	0	66	15	0	25	58	1.37
42363--42416	24	2.2	24	93	0	90	40	16	18	24	1.90
43357--43401	20	2.3	19	88	3	63	33	13	20	33	1.91
43373--43498	20	6.3	20	87	2	148	20	14	24	40	1.90
43373--43518	60	2.5	60	82	9	167	21	15	23	39	1.92
43492--43558	20	3.3	20	95	0	116	20	20	25	32	1.97
48138--48184	16	3.0	16	84	3	60	80	0	6	12	0.88
48068--48178	54	2.1	54	80	12	126	72	2	10	14	1.23
48147--48193	24	2.0	23	83	4	58	78	0	4	17	0.90
49105--49144	20	2.0	20	95	0	71	10	27	25	37	1.88
49376--49436	16	3.6	18	78	14	67	63	0	0	36	0.94
49380--49436	10	5.7	10	76	12	55	64	0	0	35	0.93
49413--49529	36	3.4	34	82	10	130	51	5	0	42	1.26
49413--49529	34	3.4	34	82	10	132	51	5	0	42	1.26
49399--49529	70	1.9	70	82	6	167	53	5	0	41	1.24
49442--49794	37	9.8	37	80	14	314	46	6	3	44	1.44
59073--59117	18	2.5	18	88	0	63	48	2	26	22	1.62
59103--59145	21	2.0	21	100	0	86	37	4	27	30	1.77
72035--72093	23	2.6	23	88	0	91	23	37	10	28	1.88
72342--72454	35	3.2	35	100	0	226	26	33	20	19	1.96
72433--72564	41	3.2	41	66	19	119	23	28	31	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72461--72624	43	3.9	43	74	15	187	22	24	34	18	1.96
72430--72607	84	2.1	84	97	0	338	22	27	32	17	1.97
72619--72727	29	3.8	29	88	2	157	16	32	29	22	1.96
72728--72759	13	2.5	13	94	0	55	18	46	3	31	1.65
72751--72790	21	1.9	21	100	0	80	25	45	10	20	1.81
72913--72961	25	2.0	25	91	0	80	30	10	32	26	1.89
73023--73080	4	14.0	4	75	7	53	63	0	34	1	1.04
73022--73053	17	1.9	16	93	6	55	62	0	37	0	0.95
73023--73080	25	2.3	25	96	0	107	63	0	34	1	1.04
73286--73376	45	2.0	47	87	8	134	41	0	12	46	1.41
75731--75763	17	1.9	17	93	0	57	45	12	6	36	1.66
75966--75994	14	2.1	14	100	0	58	58	0	0	41	0.98
75965--76457	12	39.8	13	68	16	70	44	9	2	43	1.49
75971--76457	26	19.7	26	76	12	409	44	9	2	43	1.49
75963--76460	124	4.0	120	84	11	557	44	9	2	43	1.49
76072--76337	98	2.7	98	97	1	489	44	10	2	42	1.51
76294--76515	97	2.3	98	95	0	392	44	9	2	44	1.49
76322--76476	71	2.2	69	84	11	199	43	11	1	42	1.52
79340--79398	26	2.3	24	78	16	64	40	3	8	47	1.51
79340--79407	15	4.9	14	69	16	52	41	2	8	47	1.50
80199--80261	28	2.2	30	88	5	94	55	11	0	33	1.35
80203--80268	28	2.4	28	82	10	89	54	10	0	34	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80596--80659	32	2.0	32	100	0	128	31	21	25	21	1.98
80733--80810	24	3.2	24	64	7	66	19	53	7	19	1.68
80734--80813	26	3.2	26	60	20	60	20	55	7	17	1.66
80732--80872	50	2.8	51	94	4	245	18	53	7	20	1.69
80810--80945	65	2.1	64	86	8	186	17	51	8	22	1.72
80750--80937	82	2.3	82	79	9	240	18	53	7	21	1.68
80824--80950	65	1.9	66	93	3	220	17	49	9	23	1.75
80909--81000	44	2.1	44	97	0	175	17	41	14	27	1.88
80982--81018	18	2.1	18	100	0	74	16	21	24	37	1.93
81040--81128	29	3.1	29	100	0	178	17	37	31	13	1.89
85463--85583	39	3.1	39	80	5	129	38	19	9	33	1.83
88050--88164	45	2.5	45	87	1	158	31	40	8	20	1.82
92268--92325	16	3.6	16	95	0	98	12	24	29	34	1.91
122566--122649	23	3.7	23	98	0	159	52	0	5	41	1.26
125323--125384	27	2.2	26	76	20	63	19	27	3	50	1.63
132306--132543	111	2.1	111	89	0	359	26	14	14	44	1.84
133676--133848	33	5.2	32	73	15	111	38	30	9	21	1.86
133708--133765	31	1.9	31	86	10	84	31	25	8	34	1.86
133770--133848	33	2.4	33	89	0	113	41	32	11	13	1.81
134784--134831	23	2.1	23	88	0	69	35	12	18	33	1.89
135203--135278	21	3.5	22	78	10	75	39	21	5	34	1.76
135673--135761	39	2.3	39	90	0	142	19	12	19	49	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136015--136051	18	2.1	18	89	0	56	51	10	5	32	1.60
136340--136390	25	2.0	25	88	0	75	41	19	5	33	1.76
136652--136700	21	2.3	22	86	10	66	42	20	2	34	1.64
136652--136721	23	3.2	23	84	8	74	38	21	5	34	1.77
137001--137066	25	2.6	25	80	0	87	42	13	9	34	1.76

Tables:   1

The End!