genome.fa.s3756.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003756.1 Hibiscus syriacus cultivar Beakdansim tig00008048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116497

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4761--4812	5	9.6	5	76	15	50	7	21	51	19	1.71
4734--4764	7	4.4	7	91	0	53	25	25	29	19	1.99
4747--4812	22	2.9	22	93	4	105	12	22	46	18	1.81
4754--4791	17	2.2	17	100	0	76	10	23	47	18	1.79
4862--4947	10	8.8	10	77	18	76	27	27	27	16	1.97
4824--4946	29	4.2	28	78	17	110	27	30	26	14	1.95
4854--4966	39	2.9	39	93	6	187	29	27	27	15	1.96
4816--4967	19	7.8	20	77	17	133	28	29	25	15	1.96
4821--4966	29	5.0	28	76	13	102	28	29	26	15	1.96
5879--5921	15	2.9	14	82	6	50	23	9	6	60	1.51
22822--22850	13	2.1	14	93	6	51	34	13	0	51	1.42
23376--23441	24	2.8	23	82	11	80	28	25	22	22	1.99
31910--31945	14	2.6	14	86	0	54	19	19	19	41	1.90
39962--39986	3	8.3	3	100	0	50	32	0	0	68	0.90
40595--40619	2	12.5	2	100	0	50	48	0	0	52	1.00
41209--41281	35	2.1	35	87	5	103	26	5	2	65	1.27
41215--41247	3	11.3	3	93	6	59	30	0	0	69	0.88
48358--48396	21	2.0	21	90	10	64	71	7	20	0	1.10
48350--48397	26	1.9	24	83	8	60	70	8	20	0	1.12
48393--48443	22	2.2	24	93	6	88	72	11	9	5	1.27
48393--48443	12	4.4	12	87	9	79	72	11	9	5	1.27
49628--49869	4	60.5	4	99	0	475	50	25	0	24	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50330--50568	105	2.3	102	80	6	250	32	19	11	36	1.88
50530--50632	36	2.9	36	81	4	113	33	19	11	35	1.88
50884--51010	56	2.3	55	87	11	188	29	9	14	45	1.77
50885--51025	29	5.1	28	85	9	173	30	9	13	46	1.74
50884--51010	29	4.6	27	90	5	184	29	9	14	45	1.77
50997--51124	61	2.1	61	88	0	184	29	11	16	42	1.84
51013--51152	61	2.3	61	83	0	181	30	10	15	42	1.81
51683--51730	15	2.9	16	82	14	53	29	27	6	37	1.81
52015--52145	35	3.7	35	95	2	237	35	22	9	32	1.87
52120--52298	66	2.8	63	77	6	180	25	21	15	37	1.92
52501--52822	46	7.4	44	70	16	181	25	30	19	24	1.98
52573--52768	43	4.6	43	72	11	168	26	31	19	22	1.98
52482--52829	129	2.7	129	93	1	592	25	31	19	24	1.98
52534--52734	40	4.8	40	73	13	163	24	32	18	23	1.97
52973--53045	35	2.1	35	87	5	103	27	5	2	64	1.29
52984--53011	3	9.3	3	100	0	56	32	0	0	67	0.91
60294--60327	17	2.1	17	88	5	52	32	2	11	52	1.53
64488--64516	12	2.4	12	100	0	58	0	24	0	75	0.80
66336--66384	25	1.9	26	83	4	64	30	14	2	53	1.52
66906--66951	12	3.8	12	82	0	56	21	10	0	67	1.21
68290--68388	50	2.0	50	93	0	171	39	12	31	17	1.86
69350--69384	18	1.9	18	88	0	52	31	22	25	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71483--71507	2	12.5	2	100	0	50	48	0	0	52	1.00
73617--73642	13	2.0	13	100	0	52	61	7	15	15	1.55
75248--75299	20	2.6	20	100	0	104	26	23	19	30	1.98
77656--77850	30	6.5	30	84	8	227	37	20	21	20	1.94
78435--78472	19	2.0	19	100	0	76	42	15	21	21	1.89
78425--78458	13	2.6	13	95	0	59	44	17	20	17	1.87
78425--78506	13	6.2	13	79	10	58	45	18	18	18	1.86
78523--78581	29	2.0	29	87	6	84	22	23	30	23	1.99
79302--79351	20	2.5	20	78	12	59	40	2	2	56	1.22
79269--79355	31	2.8	31	79	10	88	41	2	3	52	1.31
80076--80161	31	2.8	29	79	11	91	54	3	1	40	1.25
83010--83036	2	13.5	2	100	0	54	0	48	0	51	1.00
84601--84651	3	16.7	3	83	4	66	29	1	1	66	1.13
88470--88530	31	2.0	31	93	6	106	14	14	9	60	1.58
90959--91036	26	3.2	25	67	22	76	24	23	10	42	1.85
90974--91048	20	3.5	20	70	20	62	26	25	10	37	1.89
92870--92931	4	16.5	4	87	12	96	50	25	0	24	1.50
92870--92926	22	2.6	22	100	0	114	50	26	0	22	1.49
93398--93635	105	2.3	101	82	5	264	31	18	12	38	1.87
93582--93662	36	2.3	36	80	6	94	32	20	9	37	1.86
93597--93700	36	3.0	36	81	4	124	32	20	11	35	1.88
93942--94107	29	5.8	29	85	5	196	29	10	15	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93950--94096	57	2.6	58	82	6	201	30	10	14	43	1.80
93950--94107	56	2.8	56	82	7	203	29	10	15	44	1.80
93980--94122	29	5.1	27	81	9	96	30	10	13	45	1.78
94118--94221	52	2.0	53	94	3	183	32	13	17	36	1.89
94208--94264	27	2.1	27	90	6	89	31	7	17	43	1.76
94550--94672	63	2.0	62	86	1	174	30	15	12	42	1.83
94820--94894	36	2.1	36	82	9	91	25	17	12	45	1.82
94813--94932	63	1.9	63	85	11	165	29	17	11	41	1.85
95030--95428	40	9.3	45	71	16	267	25	31	18	25	1.97
95020--95407	128	3.0	128	96	0	722	25	31	18	24	1.97
95590--95634	3	14.7	3	81	4	54	28	2	2	66	1.15
95590--95634	18	2.4	19	85	7	65	28	2	2	66	1.15
111843--111882	20	1.9	20	85	10	53	37	20	17	25	1.94
112177--112233	30	2.0	28	86	13	80	17	3	8	70	1.28
115577--115617	19	2.2	19	90	0	64	36	7	21	34	1.82

Tables:   1

The End!