Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003757.1 Hibiscus syriacus cultivar Beakdansim tig00008049_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73942

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9346--9777
211
2.0
212
94
1
751
34
17
14
32
1.91
21449--21478
13
2.3
13
94
0
51
36
23
6
33
1.81
22752--22782
16
1.9
16
100
0
62
58
22
12
6
1.58
22851--22909
10
5.7
10
73
15
57
57
20
11
10
1.63
22855--22903
16
3.1
16
93
0
89
57
22
12
8
1.61
23654--23709
14
4.3
14
80
17
66
53
25
12
8
1.67
23634--23708
24
3.1
24
88
3
98
56
21
10
12
1.66
24959--25060
43
2.4
42
83
4
134
47
2
0
49
1.23
24989--25063
20
3.5
22
73
15
75
46
2
0
50
1.15
24959--25062
42
2.5
43
85
3
140
47
2
0
49
1.23
24990--25061
19
3.3
22
71
23
62
45
2
0
51
1.15
25095--25119
2
12.5
2
100
0
50
52
0
0
48
1.00
25937--25971
16
2.2
16
89
0
52
28
8
25
37
1.85
36764--36805
11
3.1
14
77
22
54
54
4
0
40
1.21
37123--37166
21
2.1
21
86
0
61
18
0
27
54
1.44
37485--37539
12
4.6
12
93
0
92
38
27
21
12
1.90
37482--37539
24
2.4
24
100
0
116
39
25
20
13
1.90
38133--38175
21
2.0
21
86
8
61
44
4
11
39
1.62
38454--38501
21
2.3
20
82
10
60
72
6
0
20
1.05
38832--38858
7
3.9
7
100
0
54
29
29
14
25
1.95
49383--49442
31
1.9
31
86
0
84
18
13
10
58
1.62
49908--49977
29
2.4
29
95
0
122
38
7
17
37
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51390--51430
20
2.0
21
85
4
57
41
0
14
43
1.45
54729--54810
39
2.1
39
95
0
146
51
10
7
30
1.64
55753--55831
39
2.0
39
90
0
122
35
16
12
35
1.87
68517--68625
32
3.3
33
78
17
118
44
21
0
34
1.52
69649--69755
33
3.2
33
80
10
128
36
0
19
42
1.58

Tables:   1

The End!