genome.fa.s3758.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003758.1 Hibiscus syriacus cultivar Beakdansim tig00008050_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69537

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47--84	19	2.0	19	100	0	76	47	26	10	15	1.78
2463--2526	30	2.2	30	94	2	112	39	14	26	20	1.90
10550--10617	33	2.1	33	82	0	82	22	58	4	14	1.54
13697--13740	21	2.1	21	83	8	54	43	0	2	54	1.12
17031--17081	21	2.5	22	71	12	54	45	5	7	41	1.57
17386--17410	7	3.6	7	100	0	50	88	0	0	12	0.53
19553--19621	35	1.9	36	91	2	113	46	20	0	33	1.51
20156--20229	35	2.1	35	87	5	105	32	0	22	44	1.53
30101--30126	2	13.0	2	100	0	52	50	0	50	0	1.00
31192--31308	57	2.1	57	98	0	225	37	16	19	26	1.93
36256--36291	2	18.5	2	94	5	65	52	0	0	47	1.00
36352--37345	116	8.6	116	91	0	1522	27	19	20	31	1.97
38018--38063	22	2.1	22	91	0	74	39	15	13	32	1.85
38417--38572	54	2.9	54	90	1	233	28	21	13	36	1.91
42989--43024	19	1.9	18	88	5	54	33	19	0	47	1.50
49486--49538	21	2.5	21	84	0	70	20	26	18	33	1.96
49528--49620	20	4.7	20	95	0	168	40	18	20	20	1.91
49528--49620	40	2.3	40	100	0	186	40	18	20	20	1.91
49817--49882	22	3.0	22	81	0	87	24	37	16	21	1.93
50252--50319	20	3.4	20	85	0	82	16	14	25	44	1.85
50290--50329	20	2.0	20	85	0	53	15	12	22	50	1.77
52200--52352	20	8.3	20	75	19	109	41	21	18	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52290--52366	20	3.8	20	91	0	91	35	20	19	24	1.96
52401--52449	20	2.5	20	96	0	89	16	20	24	38	1.92
52960--53036	21	3.7	21	76	0	73	22	35	19	23	1.96
54425--54460	14	2.6	14	90	0	54	30	0	22	47	1.52
54536--54631	33	2.9	34	85	3	131	14	22	20	41	1.89
54603--54697	20	4.8	20	96	0	172	16	23	25	34	1.95
57129--57182	24	2.2	24	93	0	90	40	20	18	20	1.91
57129--57196	24	2.8	24	84	0	64	38	20	17	23	1.93
58024--58070	20	2.3	20	92	0	76	21	19	27	31	1.97
58057--58231	20	8.6	20	84	2	224	20	20	20	38	1.93
58044--58171	40	3.2	39	81	9	159	20	18	21	39	1.93
58044--58193	81	1.9	80	91	1	246	20	18	21	39	1.93
58084--58231	61	2.4	61	96	0	269	20	20	20	38	1.94
58059--58231	41	4.3	40	83	5	204	20	20	20	38	1.93
58221--58294	21	3.5	21	92	0	121	37	16	25	20	1.93
58160--58295	41	3.3	41	80	1	137	30	18	22	28	1.97
58221--58323	42	2.5	41	80	10	111	35	16	26	21	1.94
61708--61732	6	4.2	6	100	0	50	48	0	0	52	1.00
62786--62884	49	2.0	51	80	9	114	43	6	5	45	1.50
65496--65548	24	2.2	24	83	10	63	47	5	7	39	1.56

Tables:   1

The End!