genome.fa.s376.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000376.1 Hibiscus syriacus cultivar Beakdansim tig00000687_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59228

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
980--1026	13	3.5	13	77	11	51	74	0	14	10	1.07
2921--2970	26	2.0	25	84	4	64	78	4	2	16	1.00
2921--2970	12	3.9	12	82	12	55	78	4	2	16	1.00
9467--9502	19	1.9	18	88	5	54	52	8	2	36	1.46
9494--9522	3	10.0	3	92	7	51	68	0	0	31	0.89
19969--20030	13	4.7	13	75	11	63	79	0	6	14	0.93
19967--20041	28	2.7	27	77	8	87	76	0	5	18	0.98
19951--20016	21	3.0	21	77	16	62	75	0	6	18	1.00
20739--20766	12	2.3	12	100	0	56	53	7	0	39	1.28
20682--20902	76	3.0	75	84	5	254	55	13	0	30	1.45
24247--24277	14	2.2	14	94	0	53	51	0	0	48	1.00
24294--24351	26	2.2	26	87	0	89	34	25	25	13	1.93
25058--25097	20	2.0	20	100	0	80	30	10	20	40	1.85
25767--25801	16	2.2	16	89	0	52	57	0	0	42	0.99
31528--31570	22	2.0	22	81	9	52	32	25	2	39	1.69
33607--33696	26	3.6	25	77	11	103	38	25	21	14	1.91
33628--33718	24	3.7	24	77	11	94	40	25	18	15	1.90
33609--33718	50	2.2	49	87	4	157	40	24	20	15	1.91
39605--39680	30	2.5	30	89	4	118	51	15	11	21	1.75
39845--39913	31	2.2	31	89	5	104	44	13	15	26	1.83
43030--43097	33	2.1	33	100	0	136	54	2	23	19	1.57
43243--43268	12	2.2	12	100	0	52	76	0	7	15	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44014--44104	28	3.1	27	63	22	67	32	9	16	40	1.81
43990--44109	60	2.0	60	100	0	240	33	10	16	40	1.82
45977--46796	410	2.0	409	99	0	1613	27	23	13	35	1.93
48626--48698	20	3.6	20	79	5	67	31	17	23	27	1.97
48667--48852	95	1.9	96	84	7	245	32	18	22	27	1.97
49337--49657	45	7.1	45	91	2	493	41	8	18	31	1.81
49300--49685	90	4.3	90	87	3	510	40	9	19	30	1.83
55662--55847	95	1.9	96	86	5	261	31	17	24	26	1.97
56295--56680	45	8.6	45	90	1	533	39	10	19	30	1.85

Tables:   1

The End!