genome.fa.s3765.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003765.1 Hibiscus syriacus cultivar Beakdansim tig00008065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77455

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7216--7274	28	2.1	28	90	0	91	40	10	18	30	1.84
18989--19035	24	2.0	24	91	0	76	40	27	12	19	1.88
19092--19174	44	1.9	43	87	2	121	39	3	28	27	1.73
19383--19438	29	1.9	29	96	0	103	12	37	30	19	1.89
19527--19594	10	6.4	10	79	12	73	8	26	38	26	1.85
19513--19594	20	3.7	21	75	23	71	8	26	39	25	1.85
19513--19602	34	2.6	34	100	0	180	8	25	40	25	1.85
19513--19594	24	3.7	21	75	23	71	8	26	39	25	1.85
19651--19708	29	2.0	29	89	0	89	24	27	34	13	1.93
19829--19878	6	8.3	6	90	0	73	18	60	2	20	1.46
19829--19878	18	2.8	18	93	0	82	18	60	2	20	1.46
22021--22128	31	3.5	31	89	0	162	35	12	26	25	1.92
22819--22873	23	2.3	24	81	12	69	41	7	0	50	1.30
22984--23025	19	2.2	20	91	4	68	76	7	0	16	1.00
23081--23143	29	2.2	29	82	5	74	33	23	4	38	1.76
23119--23258	31	4.5	31	90	3	219	25	24	12	37	1.90
27031--27061	3	10.3	3	100	0	62	32	0	0	67	0.91
28239--28271	2	17.0	2	87	6	50	48	0	3	48	1.17
28254--28519	36	7.3	35	78	9	255	43	2	6	47	1.42
28254--28519	72	3.6	72	84	8	299	43	2	6	47	1.42
28553--28631	34	2.2	37	80	8	92	48	6	1	44	1.36
28624--28720	36	2.6	37	80	4	115	44	1	7	47	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28742--28792	20	2.5	20	78	12	59	19	1	0	78	0.85
28717--28792	32	2.4	31	79	14	84	18	3	1	76	1.01
30235--30264	12	2.4	13	94	5	53	40	0	0	60	0.97
33505--33565	23	2.7	23	74	5	61	18	27	22	31	1.97
39426--39521	21	4.5	21	72	12	70	37	14	14	33	1.87
45029--45070	22	1.9	22	90	0	66	19	2	4	73	1.12
45481--45619	55	2.5	56	84	3	174	43	12	16	26	1.84
46133--46181	25	2.0	25	83	0	62	8	16	18	57	1.63
48373--48434	24	2.5	24	82	12	65	58	0	4	37	1.20
51635--51681	23	2.0	23	100	0	94	29	17	48	4	1.65
51638--51687	23	2.2	23	92	3	84	34	22	40	4	1.72
55544--55583	3	13.3	3	100	0	80	67	0	0	32	0.91
55736--56166	133	3.2	133	81	2	470	29	16	23	30	1.96
56055--56387	111	3.0	112	87	0	470	28	15	25	30	1.96
56279--56626	134	2.6	134	85	6	454	28	18	24	28	1.98
58555--58642	7	11.7	7	70	13	59	5	15	1	77	1.02
58561--58620	24	2.5	23	81	7	75	5	16	0	78	0.92
58555--58664	21	5.8	19	71	21	79	7	16	0	75	1.07
58555--58621	9	7.5	8	75	18	53	4	16	0	79	0.90
58555--58660	55	1.9	55	83	7	135	7	15	0	76	1.05
59553--59624	21	3.4	21	81	9	76	30	26	20	22	1.98
60032--60071	21	1.9	21	84	0	53	52	10	7	30	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61186--61233	19	2.5	20	82	3	62	29	12	6	52	1.63
66551--66617	20	3.3	20	79	8	91	40	19	17	22	1.92
66611--66656	20	2.3	20	96	0	83	43	26	13	17	1.85
66546--66637	40	2.3	42	81	11	129	42	20	15	21	1.89
67218--67304	39	2.2	41	79	8	99	17	18	21	42	1.89
67237--67308	20	3.7	20	94	1	128	11	19	20	48	1.79
68823--68877	21	2.6	21	100	0	110	36	40	16	7	1.76
69455--69515	31	2.0	31	87	6	88	24	31	19	24	1.98
69484--69536	21	2.6	21	81	3	63	24	32	20	22	1.98
71026--71063	20	1.9	20	94	0	67	47	23	13	15	1.81
71230--71343	20	5.8	20	87	2	149	12	17	23	46	1.82
71231--71343	39	2.8	40	86	5	149	11	17	23	46	1.81
71230--71343	59	1.9	60	89	1	176	12	17	23	46	1.82
71635--71669	17	2.1	17	94	0	61	17	2	25	54	1.57
74098--74132	12	2.9	12	91	0	52	14	0	28	57	1.38
74903--74952	19	2.6	19	77	3	55	40	12	20	28	1.87
76321--76350	3	10.3	3	92	7	53	66	0	0	33	0.92

Tables:   1

The End!