genome.fa.s3766.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003766.1 Hibiscus syriacus cultivar Beakdansim tig00008066_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68977

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10287--10339	21	2.5	21	93	0	88	30	32	20	16	1.95
10343--10529	42	4.5	42	83	5	252	21	18	25	34	1.96
10335--10529	21	9.4	21	76	12	172	21	18	25	34	1.96
10338--10529	84	2.3	82	88	5	294	21	18	25	34	1.96
10752--10804	20	2.7	20	96	0	97	35	16	20	26	1.94
12847--12891	16	2.6	19	76	16	53	28	0	4	66	1.11
12842--12948	34	3.1	34	79	14	96	35	0	2	61	1.10
12875--12953	34	2.4	34	85	8	101	37	0	1	60	1.05
14628--14675	21	2.3	21	85	0	60	25	39	12	22	1.89
14679--14772	21	4.5	21	92	5	129	18	35	26	20	1.95
15294--15390	33	2.9	34	86	4	135	54	4	3	38	1.35
15782--16787	128	7.9	128	96	2	1877	32	19	25	22	1.97
28236--28290	19	2.9	19	83	0	65	38	20	18	23	1.93
28391--28537	20	7.3	20	83	6	190	38	19	20	22	1.94
28391--28539	60	2.5	61	89	5	223	37	19	20	22	1.94
28507--28547	20	2.0	20	85	0	55	34	19	21	24	1.97
29398--29451	24	2.2	24	93	0	90	20	18	20	40	1.91
32672--32783	42	2.7	42	77	10	122	22	19	37	20	1.94
33260--33343	33	2.5	33	86	1	114	47	23	19	9	1.78
33330--33378	20	2.5	20	86	0	71	34	24	20	20	1.96
33402--33515	34	3.2	34	77	13	120	19	20	16	43	1.88
33421--33546	20	6.6	20	79	10	147	20	18	19	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33421--33546	40	3.3	40	79	13	165	20	18	19	41	1.91
33402--33544	74	1.9	74	89	0	223	20	18	18	42	1.89
35954--35991	20	1.9	20	94	0	67	57	18	10	13	1.63
36049--36095	20	2.3	20	88	0	67	21	19	23	36	1.95
36665--36754	20	4.4	20	76	5	83	23	21	18	36	1.95
36665--36754	41	2.2	40	88	2	126	23	21	18	36	1.95
36756--36795	21	1.9	21	89	0	62	40	17	25	17	1.91
38726--38755	2	15.0	2	100	0	60	50	0	0	50	1.00
44108--44178	36	2.0	36	91	0	115	38	25	18	18	1.93
45530--45641	29	3.8	29	93	1	188	31	14	9	44	1.77
50327--50438	29	3.8	29	93	1	188	31	14	9	44	1.77
53602--53677	35	2.2	35	92	0	125	39	23	1	35	1.63
54074--54319	130	1.9	128	92	1	411	36	15	12	35	1.85
54219--54697	240	2.0	238	99	0	940	40	15	16	28	1.89
54887--54949	28	2.3	27	78	8	63	46	1	3	49	1.27
55029--55062	16	2.0	18	88	11	54	64	5	2	26	1.30
59442--59491	2	25.0	2	91	0	82	46	0	54	0	1.00
60871--60895	2	12.5	2	100	0	50	48	0	52	0	1.00

Tables:   1

The End!