genome.fa.s3768.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003768.1 Hibiscus syriacus cultivar Beakdansim tig00008070_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65158

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15810--15899	27	3.3	27	79	4	101	33	32	4	30	1.78
18254--18294	20	1.9	20	85	14	55	21	4	21	51	1.67
19033--19104	35	2.1	35	91	0	117	34	6	18	40	1.77
26472--26606	68	2.0	69	91	1	218	35	11	20	32	1.89
26669--26730	31	2.0	31	93	0	106	30	16	16	37	1.90
27401--27525	40	3.0	41	96	3	234	61	12	2	24	1.42
29910--29975	31	2.1	31	88	0	96	27	9	10	53	1.65
30109--30151	20	2.2	20	82	0	50	51	18	6	23	1.70
30269--30328	2	30.0	2	100	0	120	50	0	0	50	1.00
32248--32664	182	2.3	181	87	3	604	44	14	15	26	1.84
33312--33379	19	3.6	19	95	0	118	47	0	17	35	1.48
34621--34671	24	2.2	22	89	6	75	49	0	5	45	1.26
36837--36886	19	2.6	19	90	0	73	32	2	8	58	1.39
37210--38235	199	5.2	199	91	0	1660	42	15	14	27	1.85
39030--39190	64	2.5	63	85	7	191	34	18	21	26	1.96
39646--39863	103	2.1	103	98	0	418	24	12	25	37	1.91
39879--39942	23	2.8	23	77	13	78	21	26	25	26	2.00
41319--41352	2	17.0	2	93	0	59	50	2	0	47	1.16
42159--42208	3	16.7	3	78	0	55	42	2	30	26	1.66
43958--44642	201	3.4	200	91	1	1104	35	15	14	34	1.88
48041--49343	201	6.4	198	84	5	853	38	16	14	31	1.88
48131--49178	201	5.2	201	87	3	1213	37	16	14	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56510--56629	35	3.4	34	74	13	100	42	5	5	46	1.49
56510--56741	71	3.1	71	73	11	203	42	5	6	45	1.53
56625--56716	35	2.6	36	77	6	98	44	6	3	45	1.45
56545--56710	81	2.0	82	81	7	196	43	6	4	45	1.47
59707--59754	17	2.8	17	87	9	62	50	4	0	45	1.21
59721--59780	18	3.4	18	80	11	70	46	5	1	46	1.34
59728--59786	18	3.2	18	80	9	57	47	5	1	45	1.34
59856--59884	2	14.5	2	100	0	58	48	0	0	51	1.00
59958--60047	46	2.0	45	85	10	121	46	0	27	25	1.53
60247--60417	2	89.0	2	72	16	121	50	2	3	43	1.32
60659--60697	19	2.0	20	90	10	62	41	5	10	43	1.61
60781--60868	35	2.5	36	82	10	112	48	25	1	25	1.58
60781--60836	27	2.0	28	82	3	69	46	23	1	28	1.62
60844--60883	7	5.7	7	82	11	55	45	37	0	17	1.49
60962--61018	15	3.7	15	85	2	69	43	7	8	40	1.63
60905--60978	37	2.1	36	84	5	96	41	8	10	39	1.70
61154--61442	15	19.8	14	65	23	86	45	2	2	49	1.31
61183--61288	34	3.0	35	83	14	121	46	3	4	45	1.42
61186--61275	20	4.6	20	67	26	59	46	2	4	46	1.35
61221--61331	31	3.5	31	78	17	104	43	2	3	50	1.33
61347--61422	25	3.0	27	83	9	81	50	0	1	48	1.09
61382--61465	23	3.7	24	76	15	88	47	1	0	51	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61320--61426	43	2.7	40	80	15	109	48	1	0	48	1.18
61460--61657	99	2.0	99	89	3	301	26	27	9	36	1.88
63034--63070	19	1.9	19	94	0	65	45	5	0	48	1.25
63135--63168	15	2.2	16	89	5	52	35	14	29	20	1.93
63192--63272	31	2.5	32	80	7	94	19	17	25	37	1.94

Tables:   1

The End!