genome.fa.s3769.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003769.1 Hibiscus syriacus cultivar Beakdansim tig00008073_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57627

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
968--1491	175	2.9	181	89	7	831	30	21	20	27	1.98
4946--4983	19	2.0	20	89	5	60	68	0	23	7	1.16
6369--6473	37	2.8	37	85	0	138	29	14	14	41	1.85
6557--6597	21	2.1	19	90	9	64	19	26	21	31	1.97
11879--11923	19	2.5	17	82	7	54	37	2	24	35	1.68
12193--12261	31	2.2	31	84	0	84	28	14	23	33	1.94
13007--13063	22	2.6	22	88	0	87	19	15	19	45	1.85
13023--13063	12	3.6	12	77	12	50	17	17	19	46	1.85
19302--19342	16	2.6	16	88	3	57	36	7	21	34	1.82
20056--20103	23	2.1	23	88	0	69	35	12	18	33	1.89
20830--20866	18	2.1	18	89	0	56	51	10	5	32	1.60
21070--21134	23	2.8	23	90	0	94	38	18	7	35	1.80
21278--21344	30	2.2	29	82	10	73	43	0	4	52	1.21
21489--21560	23	3.2	22	86	4	90	38	20	5	34	1.76
21706--21770	29	2.2	29	82	15	73	43	0	4	52	1.22
21072--22087	426	2.4	430	98	1	1981	37	13	8	40	1.75
21916--21967	23	2.3	22	90	6	77	44	19	1	34	1.62
21926--21988	23	2.7	23	90	0	90	38	19	6	36	1.77
23067--24686	199	8.1	200	97	0	3015	32	15	15	37	1.88
23067--24686	397	4.1	399	97	0	3011	32	15	15	37	1.88
24767--24811	19	2.4	19	92	0	72	57	8	2	31	1.41
26600--26665	33	2.0	33	87	0	96	24	45	1	28	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28766--28818	24	2.2	24	83	6	63	26	7	13	52	1.66
28962--29008	20	2.4	19	79	10	58	19	17	8	55	1.67
29129--29174	20	2.3	20	89	10	76	17	17	10	54	1.70
39051--39089	19	2.1	19	95	0	69	20	38	15	25	1.92
39037--39199	65	2.5	65	85	3	222	30	26	15	26	1.96
49438--49584	30	5.0	31	76	15	143	37	21	19	21	1.94
49761--49807	23	2.0	24	91	4	78	34	21	0	44	1.52
50403--50447	21	2.1	21	87	0	63	15	24	28	31	1.96

Tables:   1

The End!