genome.fa.s377.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000377.1 Hibiscus syriacus cultivar Beakdansim tig00000693_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79895

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1511--1558	18	2.7	18	90	0	78	27	43	12	16	1.84
2095--2161	20	3.4	20	81	2	73	38	23	22	14	1.92
2095--2197	19	5.6	19	75	14	72	41	23	21	13	1.88
2209--2267	14	3.9	14	76	20	64	10	16	23	49	1.77
2204--2286	33	2.5	33	96	0	148	10	16	21	50	1.76
2225--2302	19	4.4	19	76	15	94	12	17	20	48	1.80
2689--2749	21	2.9	21	78	7	79	22	40	11	24	1.87
4185--4223	14	2.8	14	84	0	51	35	0	17	46	1.49
4363--4434	19	3.8	19	96	0	126	50	15	19	15	1.79
4350--4446	38	2.8	33	81	14	122	47	15	21	15	1.82
4465--4539	20	3.8	20	96	0	132	14	22	24	38	1.92
5091--5178	20	4.4	20	88	0	122	29	20	26	23	1.99
5086--5220	20	6.7	20	81	5	119	25	19	24	30	1.98
5160--5241	41	2.0	41	85	4	112	21	19	21	36	1.95
5209--5260	20	2.5	21	87	3	70	21	23	17	38	1.93
8864--8905	17	2.5	17	84	0	57	57	9	23	9	1.60
9257--9292	13	2.8	13	91	0	63	0	22	5	72	1.05
9412--9436	13	1.9	13	100	0	50	48	0	0	52	1.00
9814--9855	17	2.7	15	76	23	50	40	2	2	54	1.26
13537--13719	75	2.4	75	82	1	215	50	14	4	29	1.64
13834--13873	16	2.6	16	92	4	64	40	7	17	35	1.78
13925--13988	23	2.8	23	97	0	119	23	20	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16298--16343	20	2.3	20	85	7	58	41	0	8	50	1.33
18374--18423	18	2.8	18	93	0	82	14	24	26	36	1.93
20245--20363	39	3.1	38	82	3	121	26	23	15	35	1.94
20254--20363	38	2.8	39	84	1	132	23	23	15	37	1.93
21220--21258	19	2.0	20	90	5	62	38	5	2	53	1.37
25297--25321	12	2.1	12	100	0	50	28	16	32	24	1.96
26634--27041	204	2.0	204	99	0	807	36	15	16	31	1.90
29507--29549	21	2.0	21	100	0	86	32	4	13	48	1.63
29967--30019	20	2.7	20	96	0	97	26	39	22	11	1.88
32166--32224	30	2.0	30	89	0	91	42	22	6	28	1.79
32162--32227	15	4.4	15	80	0	78	43	22	6	27	1.76
36994--37072	24	3.3	24	85	3	124	26	16	20	36	1.93
36994--37084	47	1.9	48	95	2	166	28	16	18	36	1.93
36994--37084	24	3.8	24	83	2	121	28	16	18	36	1.93
41714--41792	24	3.3	24	85	3	124	26	16	20	36	1.93
41714--41804	47	1.9	48	95	2	166	28	16	18	36	1.93
41714--41804	24	3.8	24	83	2	121	28	16	18	36	1.93
47998--48049	21	2.5	20	81	9	61	32	23	11	32	1.90
51653--51712	29	2.1	29	96	0	111	25	28	28	18	1.98
51711--51742	11	2.9	11	95	0	55	40	18	28	12	1.87
51806--51884	32	2.5	32	95	0	149	27	27	34	10	1.89
51871--51965	29	3.3	29	95	0	163	13	30	32	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52001--52097	50	2.0	49	97	2	185	18	37	19	24	1.94
52328--52366	16	2.3	18	86	8	55	38	0	5	56	1.22
52471--52560	44	2.0	48	86	8	134	42	0	11	46	1.39
52601--52677	34	2.3	33	82	10	95	41	0	11	46	1.40
52723--52769	16	3.0	16	84	9	53	29	0	10	59	1.31
52744--52774	15	2.1	14	94	5	53	38	0	6	54	1.26
54924--54956	17	1.9	17	93	0	57	45	12	6	36	1.66
55166--55205	14	2.9	14	88	3	55	47	5	2	45	1.38
55224--55267	14	3.3	13	81	12	54	45	6	2	45	1.42
55148--55257	13	8.9	12	75	14	73	49	4	2	43	1.37
55384--55491	29	3.7	29	92	2	173	15	26	39	17	1.90
58644--58720	31	2.5	31	82	2	100	28	31	25	14	1.95
59604--59668	22	3.0	22	97	0	121	9	21	49	20	1.76
59611--59651	5	7.8	5	84	10	55	4	21	53	19	1.63
59665--59763	9	10.3	9	77	10	90	29	28	27	15	1.96
59667--59764	19	5.1	19	80	13	101	29	28	25	16	1.97
59690--59764	29	2.5	31	91	8	129	29	28	26	16	1.96
63493--63768	43	6.4	43	91	1	385	27	21	23	27	1.99
63916--63974	21	2.8	21	78	0	64	57	18	5	18	1.58
68131--68191	25	2.4	25	94	0	104	42	6	40	9	1.64
68309--68504	84	2.4	82	81	5	225	29	17	20	32	1.96
68400--68584	41	4.5	41	78	7	178	33	18	17	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69218--69253	17	2.1	18	89	5	56	44	0	0	55	0.99
69228--69279	25	2.0	27	88	7	81	38	0	1	59	1.08
69223--69281	25	2.4	24	80	8	73	37	0	1	61	1.07
69536--69570	2	17.5	2	93	0	61	48	0	0	51	1.00
70761--71446	122	5.7	122	84	4	790	25	18	16	40	1.90
71234--71460	112	2.0	112	93	1	393	27	19	16	36	1.93
71486--71683	37	5.5	36	69	4	139	38	12	18	30	1.88
71516--71643	37	3.5	37	76	2	141	36	13	19	30	1.90
71470--71687	73	3.0	73	91	2	334	36	12	19	32	1.89
72413--72467	22	2.5	22	87	0	74	38	10	12	38	1.79

Tables:   1

The End!