genome.fa.s3771.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003771.1 Hibiscus syriacus cultivar Beakdansim tig00008075_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113872

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3985--4109	17	7.1	18	73	17	77	72	0	21	4	1.08
3995--4109	25	4.4	25	67	21	67	73	0	21	4	1.07
3990--4109	27	4.5	25	74	19	100	72	0	21	5	1.09
3988--4103	36	3.3	33	74	23	94	73	0	20	5	1.08
3995--4115	45	2.7	44	80	7	120	72	0	21	4	1.08
5422--6041	51	12.0	51	93	2	963	28	15	26	28	1.96
5844--6093	55	4.6	54	83	8	219	29	16	24	29	1.97
22062--22116	27	2.0	27	82	6	67	60	0	3	36	1.15
23781--23817	2	18.5	2	100	0	74	51	0	0	48	1.00
24870--24973	35	2.9	37	84	5	133	45	18	3	32	1.67
28113--29072	6	159.7	6	98	1	1852	49	16	0	33	1.46
34727--34758	15	2.1	15	100	0	64	31	21	25	21	1.98
39804--39873	23	2.8	25	80	6	63	61	7	4	27	1.41
49343--49458	43	2.9	38	73	20	128	48	7	22	21	1.75
49320--49436	43	2.8	43	71	21	124	47	7	21	23	1.77
50396--50463	32	2.1	32	91	5	111	35	0	20	44	1.52
55303--55347	21	2.1	21	87	0	63	31	28	24	15	1.96
56407--56450	15	2.8	17	70	22	51	36	6	15	40	1.74
57051--57113	13	5.5	13	65	27	52	19	26	26	26	1.99
57047--57127	22	3.6	22	94	1	135	18	25	29	25	1.98
60203--60247	21	2.1	21	87	0	63	31	28	24	15	1.96
61953--62015	13	5.5	13	65	27	52	19	26	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61949--62029	22	3.6	22	96	1	144	18	27	29	24	1.98
67568--67596	8	3.8	8	95	4	51	93	0	6	0	0.36
71936--72154	119	1.8	119	94	1	386	53	7	19	19	1.68
76761--76823	31	2.1	30	82	14	76	53	6	1	38	1.36
77327--77356	2	15.0	2	100	0	60	50	0	0	50	1.00
77864--78021	21	7.8	20	72	7	86	38	25	17	18	1.92
77988--78257	20	13.5	20	80	6	260	37	25	17	20	1.94
78027--78257	40	5.8	40	91	4	288	35	25	17	21	1.95
78940--78986	24	2.0	24	87	8	69	25	14	21	38	1.92
81467--81677	33	6.2	34	81	13	224	45	18	21	13	1.84
81481--81683	19	11.7	19	74	20	203	45	18	21	14	1.85
81509--81683	52	3.3	52	97	0	323	45	17	22	14	1.85
81692--81788	19	5.4	19	83	14	134	14	22	17	45	1.85
81654--81768	52	2.2	52	84	4	151	19	24	18	38	1.93
81673--81788	52	2.2	52	95	3	207	13	25	18	43	1.86
81895--81931	14	2.6	14	91	0	65	45	21	0	32	1.52
83851--83985	19	7.6	19	76	16	137	45	24	19	10	1.81
83907--83963	14	3.7	14	77	20	60	45	24	21	8	1.80
83888--83980	33	2.8	33	98	0	177	47	22	20	9	1.79
83851--83985	52	2.5	54	75	18	131	45	24	19	10	1.81
83981--84123	19	8.3	18	74	15	76	9	16	27	46	1.77
83997--84033	14	2.6	14	100	0	74	8	21	29	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84011--84086	33	2.3	33	90	4	118	7	19	27	44	1.78
84171--84731	93	6.1	93	99	0	1099	46	19	12	21	1.83
84171--84731	185	3.0	186	98	0	1099	46	19	12	21	1.83
84171--84731	278	2.0	279	98	0	1099	46	19	12	21	1.83
86476--86534	19	3.4	18	73	22	54	8	18	25	47	1.77
86492--86548	14	3.7	14	77	20	60	8	22	22	45	1.80
86476--86556	33	2.5	33	93	0	135	8	20	22	48	1.77
86533--86588	21	2.7	21	97	0	103	10	23	16	50	1.76
86668--86738	33	2.2	33	92	0	115	47	18	22	11	1.80
86920--86974	22	2.5	22	81	0	74	20	16	40	23	1.91
87121--87274	20	7.7	20	80	7	159	18	17	26	37	1.93
87120--87294	40	4.3	40	83	2	208	17	17	26	38	1.92
87120--87417	40	7.4	39	72	9	154	19	16	25	38	1.92
87222--87359	20	6.8	20	76	9	118	18	17	24	39	1.92
87261--87363	21	5.0	21	76	5	84	23	16	24	35	1.95
91784--91834	23	2.2	23	85	3	66	43	3	3	49	1.39
104341--104374	2	17.5	2	87	6	52	50	0	0	50	1.00
104679--104762	24	3.5	24	81	0	96	58	14	14	13	1.64
104731--104757	14	1.9	14	100	0	54	59	14	11	14	1.62
111107--111182	9	8.4	9	83	0	62	47	36	15	0	1.46
111104--111162	12	4.9	12	80	0	64	47	37	15	0	1.45
112530--112580	24	2.1	24	100	0	102	21	15	19	43	1.88

Tables:   1

The End!