genome.fa.s3772.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003772.1 Hibiscus syriacus cultivar Beakdansim tig00008076_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56000

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515--569	24	2.3	24	93	3	94	38	14	16	30	1.89
5321--5400	3	26.0	3	79	14	67	35	0	0	65	0.93
5321--5400	34	2.2	38	82	12	107	35	0	0	65	0.93
5764--6151	106	3.6	106	83	4	476	35	22	17	23	1.95
6461--6565	36	2.9	35	81	9	104	29	21	14	34	1.93
6486--6565	36	2.2	37	90	2	126	31	21	13	33	1.92
6585--6876	37	8.2	36	76	13	250	26	19	12	41	1.87
6485--6877	176	2.2	174	87	6	596	27	19	12	39	1.88
6911--7098	84	2.2	84	87	0	259	30	26	20	22	1.98
7328--7369	19	2.2	20	91	4	68	26	0	0	73	0.83
7328--7388	22	2.8	21	80	11	70	26	1	0	72	0.94
7337--7381	19	2.4	19	81	7	56	28	0	0	71	0.87
9358--9392	18	1.9	18	94	0	61	20	17	34	28	1.95
13512--13546	15	2.5	14	86	13	54	37	20	20	22	1.95
17330--17368	19	2.0	20	85	5	53	46	0	5	48	1.24
25296--25343	23	2.1	23	88	0	69	35	12	18	33	1.89
25721--25772	23	2.3	22	90	6	77	44	19	1	34	1.62
25731--25793	23	2.7	23	90	0	90	38	19	6	36	1.77
26197--26322	39	3.2	39	97	0	234	17	13	20	48	1.81
26580--26616	18	2.1	18	89	0	56	51	10	5	32	1.60
26865--26915	25	2.0	25	92	0	84	39	19	7	33	1.81
27138--27177	21	2.0	20	85	5	53	50	10	15	25	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27180--27231	23	2.3	22	90	6	77	44	19	1	34	1.62
27190--27252	23	2.7	23	90	0	90	38	19	6	36	1.77
27610--27661	23	2.3	22	90	6	77	44	19	1	34	1.62
27620--27682	23	2.7	23	90	0	90	38	19	6	36	1.77
30694--31204	183	2.8	183	94	1	875	33	16	13	36	1.88
32401--32475	3	25.0	3	79	0	78	25	34	5	34	1.79
33939--35098	197	5.9	199	97	2	2186	30	16	16	36	1.91
33939--35098	393	3.0	394	97	2	2192	30	16	16	36	1.91
35218--35266	19	2.6	19	93	3	82	55	10	2	32	1.45
37054--37119	33	2.0	33	90	0	105	22	48	0	28	1.51
37153--37217	21	3.1	21	80	6	69	15	29	15	40	1.88
39435--39477	20	2.3	18	82	17	61	18	16	11	53	1.72
39440--39486	20	2.3	20	89	10	78	17	17	10	55	1.69
39608--39653	20	2.3	20	89	10	76	17	17	10	54	1.70
39719--40162	226	2.0	223	92	3	739	39	7	7	44	1.62
40976--41015	12	3.6	12	87	12	59	45	0	0	55	0.99
41002--41365	22	16.6	22	88	2	491	42	0	8	48	1.34
41863--41889	2	13.5	2	100	0	54	48	0	0	51	1.00
43653--43744	40	2.3	40	85	5	116	30	21	17	30	1.96
44166--44204	20	2.0	20	94	0	69	25	12	43	17	1.85
44541--44566	13	2.0	13	100	0	52	23	0	23	53	1.46
46921--47068	8	18.0	8	68	19	74	46	4	3	45	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46929--46976	25	1.9	25	87	8	71	43	8	0	47	1.33
46909--46977	33	2.1	33	94	2	120	44	8	0	46	1.34
46920--47097	42	4.3	41	81	8	191	46	3	2	46	1.35
47001--47097	14	6.9	14	74	13	58	48	3	2	46	1.29
46987--47097	28	4.0	28	69	17	77	48	2	4	44	1.37
50336--50845	172	3.0	172	89	6	752	31	9	8	50	1.65
52373--52427	20	2.6	21	83	13	60	47	1	3	47	1.30
52373--52431	21	2.8	21	82	15	68	45	1	3	49	1.28

Tables:   1

The End!