Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003774.1 Hibiscus syriacus cultivar Beakdansim tig00008078_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70816
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Found at i:7423 original size:2 final size:2
Alignment explanation
Indices: 7416--7478 Score: 119
Period size: 2 Copynumber: 32.0 Consensus size: 2
7406 TTAAAGGTGG
7416 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7457 AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
7479 TAATAATATA
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 59 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9064 original size:23 final size:23
Alignment explanation
Indices: 9034--9099 Score: 114
Period size: 23 Copynumber: 2.9 Consensus size: 23
9024 TGTACTTATG
* *
9034 TGCTGAATCATTCAACACTGTAT
1 TGCTGAATCAGTCAGCACTGTAT
9057 TGCTGAATCAGTCAGCACTGTAT
1 TGCTGAATCAGTCAGCACTGTAT
9080 TGCTGAATCAGTCAGCACTG
1 TGCTGAATCAGTCAGCACTG
9100 AATCATTCAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (23 bp):
TGCTGAATCAGTCAGCACTGTAT
Found at i:16244 original size:24 final size:22
Alignment explanation
Indices: 16207--16262 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 22
16197 ATTTGTTTAA
*
16207 TATAAAAAATTATTTTATTA-T
1 TATATAAAATTATTTTATTAGT
16228 TATTATATAAATATATTTTATTAGT
1 TA-TATA-AAAT-TATTTTATTAGT
16253 TATATAAAAT
1 TATATAAAAT
16263 CATAACAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 2 0.07
22 3 0.10
23 8 0.27
24 14 0.47
25 3 0.10
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
TATATAAAATTATTTTATTAGT
Found at i:23192 original size:31 final size:31
Alignment explanation
Indices: 23157--23266 Score: 96
Period size: 31 Copynumber: 3.4 Consensus size: 31
23147 TCAGTCGCTG
* *
23157 CTGGTAATTCCTTGTATATGTTCAACACCGA
1 CTGGTAATTCCTTGTATAGGTTCAACACAGA
* * * *
23188 CTGGTAATTCCTATCTCTGGCAGGTTCAATCGCTG-
1 CTGGTAATTCCT-TGTAT---AGGTTCAA-CACAGA
*
23223 TTGGTAATTCCTTGTATAGGTTCAACACAGA
1 CTGGTAATTCCTTGTATAGGTTCAACACAGA
*
23254 CTGTTAATTCCTT
1 CTGGTAATTCCTT
23267 ATGGACCTAA
Statistics
Matches: 61, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
30 3 0.05
31 31 0.51
32 3 0.05
34 3 0.05
35 18 0.30
36 3 0.05
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (31 bp):
CTGGTAATTCCTTGTATAGGTTCAACACAGA
Found at i:23247 original size:66 final size:66
Alignment explanation
Indices: 23141--23265 Score: 205
Period size: 66 Copynumber: 1.9 Consensus size: 66
23131 GAAGACTCAT
* * *
23141 GCAGGTTCAGTCGCTGCTGGTAATTCCTTGTATATGTTCAACACCGACTGGTAATTCCTATCTCT
1 GCAGGTTCAATCGCTGCTGGTAATTCCTTGTATAGGTTCAACACAGACTGGTAATTCCTATCTCT
23206 G
66 G
* *
23207 GCAGGTTCAATCGCTGTTGGTAATTCCTTGTATAGGTTCAACACAGACTGTTAATTCCT
1 GCAGGTTCAATCGCTGCTGGTAATTCCTTGTATAGGTTCAACACAGACTGGTAATTCCT
23266 TATGGACCTA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 54 1.00
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (66 bp):
GCAGGTTCAATCGCTGCTGGTAATTCCTTGTATAGGTTCAACACAGACTGGTAATTCCTATCTCT
G
Found at i:30567 original size:7 final size:7
Alignment explanation
Indices: 30555--30581 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
30545 AGAACACTAT
30555 CATGCAG
1 CATGCAG
30562 CATGCAG
1 CATGCAG
30569 CATGCAG
1 CATGCAG
30576 CATGCA
1 CATGCA
30582 ACAGTAGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.15
Consensus pattern (7 bp):
CATGCAG
Found at i:33847 original size:149 final size:148
Alignment explanation
Indices: 33578--33879 Score: 469
Period size: 149 Copynumber: 2.0 Consensus size: 148
33568 GAGTCGAGGG
* * * * * *
33578 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATTTATGAGGTCTTTGAGGCACATA
1 TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTATGAAGTCTTTAAGACACATA
* *
33643 CTTGGTCCTTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTAT
66 CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTAT
* *
33708 ATGGCACTACGGTGCAAT
131 AGGGCACTACGATGCAAT
* * *
33726 TCTACGCGGTCTTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACAT
1 TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTATGAAGTCTT-TAAGACACAT
*
33791 ACTTGATCCCTAGTATATGTCTATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
65 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
33856 TAGGGCACTACGATGCAAT
130 TAGGGCACTACGATGCAAT
33875 TCTAC
1 TCTAC
33880 ATGGCACTTC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
148 47 0.34
149 92 0.66
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (148 bp):
TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTATGAAGTCTTTAAGACACATA
CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTAT
AGGGCACTACGATGCAAT
Found at i:34101 original size:21 final size:21
Alignment explanation
Indices: 34077--34137 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
34067 ATAAATAATT
*
34077 TGATGATAATGATAGA-GATAA
1 TGATAATAAT-ATAGATGATAA
*
34098 TGATAATAATATATATGATAA
1 TGATAATAATATAGATGATAA
* * *
34119 TGCTAAGAAAATAGATGAT
1 TGATAATAATATAGATGAT
34138 GATATATGTA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 4 0.12
21 29 0.88
ACGTcount: A:0.49, C:0.02, G:0.18, T:0.31
Consensus pattern (21 bp):
TGATAATAATATAGATGATAA
Found at i:34143 original size:33 final size:33
Alignment explanation
Indices: 34079--34144 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
34069 AAATAATTTG
*
34079 ATGATAATGATAGAGATAATGATAATAATATAT
1 ATGATAATGATAGAGAAAATGATAATAATATAT
* * *
34112 ATGATAATGCTA-AGAAAATAGATGATGATATAT
1 ATGATAATGATAGAGAAAAT-GATAATAATATAT
34145 GTACATGAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 6 0.21
33 22 0.79
ACGTcount: A:0.50, C:0.02, G:0.17, T:0.32
Consensus pattern (33 bp):
ATGATAATGATAGAGAAAATGATAATAATATAT
Found at i:41890 original size:21 final size:22
Alignment explanation
Indices: 41866--41922 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
41856 TTTTAACAAT
41866 AAATAATATATAATT-AAATAA
1 AAATAATATATAATTAAAATAA
* * *
41887 AAATAA-ATACATTTAAAATTA
1 AAATAATATATAATTAAAATAA
41908 AAATAATAGTATAAT
1 AAATAATA-TATAAT
41923 ATAACATGAC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
20 6 0.21
21 17 0.61
22 1 0.04
23 4 0.14
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (22 bp):
AAATAATATATAATTAAAATAA
Found at i:50951 original size:13 final size:12
Alignment explanation
Indices: 50919--50952 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
50909 GAATTGGTAG
50919 ATTTTTAAAGAA
1 ATTTTTAAAGAA
*
50931 AATTTTAAAGAA
1 ATTTTTAAAGAA
50943 ATTTATTAAA
1 ATTT-TTAAA
50953 ATTTTAAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (12 bp):
ATTTTTAAAGAA
Found at i:50975 original size:21 final size:21
Alignment explanation
Indices: 50929--50982 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
50919 ATTTTTAAAG
*
50929 AAAATTTTAAAGAAATTTATT
1 AAAATTTTAAAGAAATTTAAT
*
50950 AAAATTTTAAAGTAATTATAAT
1 AAAATTTTAAAGAAATT-TAAT
50972 -AAATTATTAAA
1 AAAATT-TTAAA
50983 ACATAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 21 0.72
22 8 0.28
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.41
Consensus pattern (21 bp):
AAAATTTTAAAGAAATTTAAT
Found at i:52763 original size:31 final size:34
Alignment explanation
Indices: 52699--52764 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
52689 TCATTATAAC
* *
52699 CCGTTTGATGTCCATGATCAAGATATCATCAAAG
1 CCGTTTGATGTCCATCATCAAGAGATCATCAAAG
52733 CCGTTTGATGTCCATCA-CAAG-GA-CATCAAAG
1 CCGTTTGATGTCCATCATCAAGAGATCATCAAAG
52764 C
1 C
52765 GCTCGACATC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
31 9 0.30
32 1 0.03
33 4 0.13
34 16 0.53
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (34 bp):
CCGTTTGATGTCCATCATCAAGAGATCATCAAAG
Found at i:57393 original size:72 final size:70
Alignment explanation
Indices: 57315--57543 Score: 304
Period size: 72 Copynumber: 3.3 Consensus size: 70
57305 TGTTGATTAT
*
57315 TTAATTTTCAATGTGCTCATATGCAAAAACAACTACCCAAAGCTTAATTAAATTAGTTCATACGT
1 TTAATTTTCAATGTGTTCATATGCAAAAACAACTACCCAAAGCTTAATTAAATTAGTTCATACGT
57380 TGACTGC
66 TGA--GC
* *
57387 TTAATTTTCAATGTGTTCATAAGCAAAAACAACTACCCAAAACTTAATTAAATTAGTTCATACGT
1 TTAATTTTCAATGTGTTCATATGCAAAAACAACTACCCAAAGCTTAATTAAATTAGTTCATACGT
57452 TG-GC
66 TGAGC
* * * *
57456 TAAATTTTCAATGTGTTCATATGC--AAA-AACGACCCACAGCTTAATTAAATTAGTTCATATGT
1 TTAATTTTCAATGTGTTCATATGCAAAAACAACTACCCAAAGCTTAATTAAATTAGTTCATACGT
**
57518 TGATTA
66 TGA-GC
*
57524 TTGAATTTTCAACGTGTTCA
1 TT-AATTTTCAATGTGTTCA
57544 GAATTGACAA
Statistics
Matches: 141, Mismatches: 13, Indels: 9
0.87 0.08 0.06
Matches are distributed among these distances:
66 33 0.23
67 3 0.02
68 1 0.01
69 40 0.28
72 64 0.45
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.35
Consensus pattern (70 bp):
TTAATTTTCAATGTGTTCATATGCAAAAACAACTACCCAAAGCTTAATTAAATTAGTTCATACGT
TGAGC
Found at i:62571 original size:34 final size:33
Alignment explanation
Indices: 62532--62638 Score: 94
Period size: 34 Copynumber: 3.2 Consensus size: 33
62522 GTTTGAATAG
62532 TAAAAGTAGTTTATATCTTTTGAATATTTCAAAT
1 TAAAAG-AGTTTATATCTTTTGAATATTTCAAAT
* * * *
62566 TAAAAGA-TATGATTATCTGTTT-AA-GTTTGAATAG
1 TAAAAGAGT-TTA-TATCT-TTTGAATATTTCAA-AT
*
62600 TAAAACAAGTTTATATCTTTTGAATATTTCAAAT
1 TAAAA-GAGTTTATATCTTTTGAATATTTCAAAT
62634 TAAAA
1 TAAAA
62639 TATATAATTA
Statistics
Matches: 56, Mismatches: 9, Indels: 16
0.69 0.11 0.20
Matches are distributed among these distances:
32 1 0.02
33 11 0.20
34 32 0.57
35 11 0.20
36 1 0.02
ACGTcount: A:0.41, C:0.06, G:0.10, T:0.43
Consensus pattern (33 bp):
TAAAAGAGTTTATATCTTTTGAATATTTCAAAT
Found at i:62592 original size:68 final size:68
Alignment explanation
Indices: 62481--62666 Score: 266
Period size: 68 Copynumber: 2.7 Consensus size: 68
62471 ATAATTATTC
* * * * **
62481 TTTGAATATGTCAAATTAAAAGGTATTTG-TTACCTATTTAAGTTTGAATAGTAAAAGTAGTTTA
1 TTTGAATATTTCAAATTAAAA-G-ATATGATTATCTGTTTAAGTTTGAATAGTAAAACAAGTTTA
62545 TATCT
64 TATCT
62550 TTTGAATATTTCAAATTAAAAGATATGATTATCTGTTTAAGTTTGAATAGTAAAACAAGTTTATA
1 TTTGAATATTTCAAATTAAAAGATATGATTATCTGTTTAAGTTTGAATAGTAAAACAAGTTTATA
62615 TCT
66 TCT
* * *
62618 TTTGAATATTTCAAATTAAAATATATAATTATCTGTTTAAATTTGAATA
1 TTTGAATATTTCAAATTAAAAGATATGATTATCTGTTTAAGTTTGAATA
62667 TCGAAGATAT
Statistics
Matches: 107, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
67 4 0.04
68 83 0.78
69 20 0.19
ACGTcount: A:0.39, C:0.05, G:0.11, T:0.44
Consensus pattern (68 bp):
TTTGAATATTTCAAATTAAAAGATATGATTATCTGTTTAAGTTTGAATAGTAAAACAAGTTTATA
TCT
Found at i:62651 original size:34 final size:33
Alignment explanation
Indices: 62545--62651 Score: 85
Period size: 34 Copynumber: 3.2 Consensus size: 33
62535 AAGTAGTTTA
*
62545 TATCTTTTGAATATTTCAAATTAAAAGATATGAT
1 TATCTTTTGAATATTTCAAATTAAAACATAT-AT
* * * *
62579 TATCTGTTT-AA-GTTTGAATAGTAAAACA-AGTTT
1 TATCT-TTTGAATATTTCAA-ATTAAAACATA-TAT
*
62612 ATATCTTTTGAATATTTCAAATTAAAATATATAAT
1 -TATCTTTTGAATATTTCAAATTAAAACATAT-AT
62647 TATCT
1 TATCT
62652 GTTTAAATTT
Statistics
Matches: 55, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
33 10 0.18
34 35 0.64
35 10 0.18
ACGTcount: A:0.40, C:0.07, G:0.08, T:0.45
Consensus pattern (33 bp):
TATCTTTTGAATATTTCAAATTAAAACATATAT
Found at i:65215 original size:19 final size:18
Alignment explanation
Indices: 65193--65238 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
65183 TATTCAAGTC
*
65193 AATTTAAATTCATATTTAA
1 AATTTAAATTAAT-TTTAA
65212 AATTTAAATTAATTTTAA
1 AATTTAAATTAATTTTAA
65230 AATTATAAA
1 AATT-TAAA
65239 CTTTTAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (18 bp):
AATTTAAATTAATTTTAA
Found at i:66105 original size:18 final size:17
Alignment explanation
Indices: 66066--66106 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
66056 TTTAAGTTTA
*
66066 TAAATTTAAAATTAATT
1 TAAATTTAAAATGAATT
*
66083 AAAATTTAAATATGAATT
1 TAAATTTAAA-ATGAATT
66101 TAAATT
1 TAAATT
66107 GACTCAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (17 bp):
TAAATTTAAAATGAATT
Found at i:68421 original size:23 final size:22
Alignment explanation
Indices: 68395--68458 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 22
68385 CAGCTCATAT
68395 AATTGCACCTAAGTGCCACGTAG
1 AATTGCACCT-AGTGCCACGTAG
* *
68418 AATTGCACCGGAGTGCCGCGTAG
1 AATTGCACC-TAGTGCCACGTAG
68441 AATTGCACCGTAGTGCCA
1 AATTGCACC-TAGTGCCA
68459 TATAATAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (22 bp):
AATTGCACCTAGTGCCACGTAG
Found at i:68622 original size:94 final size:92
Alignment explanation
Indices: 68474--68643 Score: 263
Period size: 94 Copynumber: 1.8 Consensus size: 92
68464 TAATGTCCAT
*
68474 AAGGACCACATATCATTCCTTAAGAATATACATATGCCAGGATCAAGTATGTGTCTCACCAGACC
1 AAGGACCACATATCATTCCTTAAGAATATACATATACCAGGATCAAGTATGTGTCTCACCAGACC
68539 T-CACATGTTCCAAGAATATATGTCCG
66 TCCACATGTTCCAAGAATATATGTCCG
*
68565 AAGGACCA-GTATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAG-A--ATATACATATACC-AGGATCAAGTATGTGTCTCACCA
68629 GACCTCGCACATGTT
62 GACCTC-CACATGTT
68644 TCAAATAATA
Statistics
Matches: 71, Mismatches: 2, Indels: 7
0.89 0.03 0.09
Matches are distributed among these distances:
90 14 0.20
91 9 0.13
93 12 0.17
94 28 0.39
96 8 0.11
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.26
Consensus pattern (92 bp):
AAGGACCACATATCATTCCTTAAGAATATACATATACCAGGATCAAGTATGTGTCTCACCAGACC
TCCACATGTTCCAAGAATATATGTCCG
Found at i:69184 original size:19 final size:20
Alignment explanation
Indices: 69147--69184 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
69137 CTTTTTTTTA
*
69147 TGGGGGAATCGGTTCCCCCC
1 TGGGGGAATCGATTCCCCCC
*
69167 TGGGGGTATCGATTCCCC
1 TGGGGGAATCGATTCCCC
69185 TCTAGCATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.32, G:0.34, T:0.24
Consensus pattern (20 bp):
TGGGGGAATCGATTCCCCCC
Found at i:70477 original size:63 final size:65
Alignment explanation
Indices: 70392--70519 Score: 197
Period size: 63 Copynumber: 2.0 Consensus size: 65
70382 TTATTTTAAA
* * * *
70392 TAGTAAAATGATTTTATATCTTTTGAATATTTCAAATTAAAAGATAT-T-ATGTTTAAGTTTGAT
1 TAGTAAAACGAGTTTATATCTTTTGAATATTTAAAATTAAAAGATATATCATGTTTAAATTTGAT
70455 TAGTAAAACGAGTTTATATCTTTTGAATATTTAAAATTAAAAGATATCATCATGTTTAAATTTGA
1 TAGTAAAACGAGTTTATATCTTTTGAATATTTAAAATTAAAAGATAT-ATCATGTTTAAATTTGA
70520 ATAATGAAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
63 44 0.76
65 1 0.02
66 13 0.22
ACGTcount: A:0.40, C:0.05, G:0.11, T:0.45
Consensus pattern (65 bp):
TAGTAAAACGAGTTTATATCTTTTGAATATTTAAAATTAAAAGATATATCATGTTTAAATTTGAT
Done.