genome.fa.s3775.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003775.1 Hibiscus syriacus cultivar Beakdansim tig00008084_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91023

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9099--9157	18	3.3	18	71	21	52	40	5	5	49	1.47
9091--9168	35	2.2	35	93	0	129	42	5	5	47	1.47
11802--11840	2	19.5	2	100	0	78	48	0	0	51	1.00
27360--27606	55	4.5	55	83	6	300	25	21	26	25	2.00
27339--27603	27	9.5	28	66	19	119	26	21	27	25	1.99
27306--27624	55	5.8	55	76	13	266	27	21	25	25	1.99
27722--27879	81	2.0	81	93	0	271	31	22	31	15	1.95
50930--51236	61	5.0	61	92	2	510	44	2	3	48	1.34
51051--51104	24	2.3	22	75	12	54	51	1	0	46	1.11
51963--52122	41	3.9	41	93	3	261	31	16	18	34	1.93
61802--61843	22	1.9	22	90	9	68	28	9	9	52	1.65
62271--62295	4	6.2	4	100	0	50	28	24	24	24	2.00
62606--62781	87	2.0	87	92	0	289	26	22	21	29	1.99
66057--66107	24	2.1	24	100	0	102	43	19	15	21	1.88
67416--67450	18	1.9	18	88	0	52	2	28	42	25	1.69
67457--67514	3	19.3	3	83	0	53	0	20	36	43	1.52
67459--67541	6	13.8	6	81	0	58	0	16	36	46	1.48
67457--67529	9	8.1	9	84	0	65	0	16	36	46	1.47
67468--67538	12	5.9	12	83	0	79	0	15	36	47	1.46
73905--73951	23	2.0	24	87	4	69	10	4	17	68	1.35
73906--73976	33	2.1	34	84	2	90	11	8	16	63	1.51
73939--74000	24	2.6	24	81	0	70	12	14	14	58	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74338--74371	16	2.1	16	88	5	50	47	0	0	52	1.00
74425--74452	8	3.5	8	100	0	56	32	0	0	67	0.91

Tables:   1

The End!