genome.fa.s3777.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003777.1 Hibiscus syriacus cultivar Beakdansim tig00008086_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97791

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1532--1713	88	2.0	90	87	5	262	15	11	14	57	1.65
2574--2601	14	2.0	14	100	0	56	21	7	28	42	1.79
3226--3256	2	15.5	2	100	0	62	51	0	0	48	1.00
7377--7497	32	3.8	31	79	3	125	20	24	27	27	1.99
7381--7517	64	2.1	64	83	9	172	21	24	26	28	1.99
8802--8849	3	16.3	3	95	4	89	33	0	0	66	0.92
10875--10918	22	2.0	22	81	0	52	27	4	15	52	1.63
14532--14578	21	2.3	20	82	13	60	76	10	12	0	1.02
15738--15780	4	11.2	4	90	9	72	51	25	0	23	1.49
16242--16480	105	2.3	102	84	7	297	30	19	12	37	1.88
16426--16510	36	2.4	36	84	4	109	30	21	11	36	1.89
16801--16896	33	3.2	28	82	12	113	30	9	15	44	1.78
16825--16911	28	3.1	27	86	6	111	33	8	13	44	1.73
16907--17008	52	2.0	52	88	7	154	33	13	17	35	1.89
16995--17090	31	3.1	31	88	8	126	36	9	13	40	1.77
16996--17157	30	5.1	30	75	17	141	33	11	12	41	1.79
17044--17210	67	2.5	67	95	1	293	29	12	11	45	1.78
17057--17271	67	3.3	64	87	5	238	30	12	13	44	1.79
18120--18201	28	2.9	28	83	3	94	24	12	13	50	1.76
18259--18462	43	4.7	44	75	10	188	25	31	20	22	1.98
18213--18551	130	2.6	129	91	3	529	26	30	19	23	1.98
18757--18833	3	26.3	3	94	5	140	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20873--20916	22	2.0	22	81	0	52	27	4	15	52	1.63
25581--25651	3	23.7	3	91	0	115	30	1	0	67	0.99
27663--27718	23	2.4	25	82	11	73	33	1	1	62	1.16
38339--38409	19	3.7	18	80	15	79	84	0	12	2	0.73
38336--38413	26	2.9	27	80	10	88	83	0	14	2	0.75
38339--38413	21	3.5	20	75	24	73	84	0	13	2	0.74
38339--38381	1	43.0	1	80	0	50	90	0	9	0	0.45
38726--38770	16	2.8	16	83	10	56	31	8	6	53	1.58
39406--40046	83	7.7	83	94	1	1081	27	12	21	37	1.90
40772--41407	114	5.6	113	88	6	812	36	13	19	29	1.91
41542--41607	3	23.0	3	86	9	93	31	1	0	66	1.01
43991--44036	19	2.3	20	81	7	58	28	28	17	26	1.98
44079--44135	21	2.7	21	86	5	71	21	26	8	43	1.81
44236--44329	20	4.7	20	80	2	116	41	19	19	20	1.91
44151--44329	20	8.8	21	70	11	95	37	20	18	24	1.94
44236--44329	41	2.3	41	83	1	118	41	19	19	20	1.91
44873--44941	20	3.8	19	72	20	76	46	18	23	11	1.82
44879--44971	33	2.8	33	91	1	141	45	22	21	10	1.83
44967--45075	20	5.9	19	80	13	129	11	23	18	45	1.82
47327--47393	21	3.2	21	66	6	55	23	35	20	19	1.95
47300--47393	42	2.2	42	81	7	102	22	35	21	21	1.96
48744--48793	14	3.6	14	91	0	82	36	0	20	44	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48900--48994	19	5.3	19	80	14	96	45	22	20	12	1.84
48900--48965	33	2.0	33	90	0	105	45	19	22	12	1.83
48932--48994	19	3.3	19	91	4	101	46	23	17	12	1.83
48991--49088	19	5.7	19	66	22	72	12	22	19	45	1.83
48994--49120	33	3.8	33	88	2	184	13	22	18	46	1.83
48991--49120	66	2.0	66	92	3	217	13	22	18	46	1.83
49106--49147	20	2.2	20	91	4	68	23	21	19	35	1.96
49114--49186	20	3.6	20	68	17	51	24	17	23	34	1.96
51631--51684	24	2.2	24	90	0	81	40	20	16	22	1.91
52365--52446	20	4.1	20	93	0	137	21	28	20	29	1.98
52793--52848	20	2.8	20	89	5	87	44	21	17	16	1.86
52867--52931	19	3.7	19	82	13	86	13	20	18	47	1.82
54523--54603	43	1.9	43	87	2	119	19	13	43	23	1.87
54951--55062	20	5.7	20	86	4	120	37	25	22	15	1.93
55119--55171	20	2.7	20	90	0	79	15	20	24	39	1.91
55706--55754	18	2.7	18	87	0	80	14	12	46	26	1.79
57072--57114	20	2.2	20	91	0	68	51	20	18	9	1.74
57621--57666	20	2.3	20	92	0	74	28	17	19	34	1.94
57630--57716	20	4.3	20	76	11	70	24	17	24	34	1.96
57641--57720	41	2.0	41	92	0	133	22	16	22	38	1.92
57658--57720	20	3.0	22	72	13	78	19	17	23	39	1.92
57650--57717	20	3.3	20	74	11	75	22	17	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57650--57738	41	2.2	41	84	8	110	22	17	22	37	1.94
57745--57799	21	2.6	22	80	5	69	40	18	23	18	1.91
64865--64899	15	2.2	16	90	5	54	34	8	28	28	1.87
64984--65032	21	2.3	22	83	16	59	22	16	28	32	1.95
67468--67513	18	2.8	16	80	6	56	39	4	28	28	1.76
68068--68150	32	2.6	32	90	3	132	42	37	9	10	1.73
67887--68445	287	1.9	288	85	8	762	40	19	11	28	1.87
72463--72536	21	3.5	21	96	0	130	31	32	20	16	1.94
72540--72682	63	2.3	61	85	7	189	21	19	23	34	1.96
72606--72707	42	2.4	43	93	3	172	22	17	23	36	1.95
72540--72703	63	2.6	61	82	9	163	21	19	22	35	1.96
72800--72846	6	7.8	6	100	0	94	34	51	14	0	1.43
73492--73523	6	5.5	6	92	7	57	0	15	50	34	1.45
73620--73752	21	6.4	21	74	10	130	39	21	17	22	1.93
73645--73809	42	4.0	42	88	3	235	39	23	14	23	1.91
73641--73813	82	2.1	83	91	2	276	39	23	15	22	1.91
73786--73881	21	4.6	21	73	12	81	31	29	18	20	1.97
74850--74903	22	2.5	22	84	0	72	27	12	27	31	1.93
77189--77232	20	2.3	19	84	7	54	22	22	6	47	1.75
88106--88381	85	3.3	82	82	3	327	31	20	17	31	1.95
88106--88445	83	4.1	83	80	5	235	32	20	16	31	1.95
88274--88472	41	4.8	41	70	11	111	32	20	15	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89233--89491	124	2.1	123	80	3	297	29	18	21	30	1.97
91438--91464	13	2.1	13	100	0	54	48	0	7	44	1.31
93409--93469	23	2.7	23	84	0	86	29	27	24	18	1.98

Tables:   1

The End!