Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003778.1 Hibiscus syriacus cultivar Beakdansim tig00008087_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71797

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3876--3920
21
2.1
21
83
0
54
55
8
6
28
1.56
4705--4744
21
1.9
21
89
0
62
30
27
22
20
1.98
13860--14074
109
2.0
109
83
7
276
31
15
8
44
1.77
24122--24193
15
4.6
16
77
17
64
0
44
0
55
0.99
24124--24209
33
2.6
33
81
7
86
0
41
1
56
1.06
24136--24225
33
2.9
30
77
9
90
0
41
3
55
1.16
24113--24194
15
4.8
18
69
15
59
0
43
0
56
0.99
25902--25947
24
1.9
24
86
0
65
15
10
17
56
1.67
26410--26452
16
2.7
16
92
0
68
11
11
20
55
1.66
26525--26562
16
2.5
15
84
12
51
18
7
10
63
1.50
26945--26992
3
16.0
3
100
0
96
66
0
0
33
0.92
28932--29019
42
2.1
42
84
0
113
20
13
15
50
1.78
29233--29282
21
2.3
23
86
10
70
46
0
0
54
1.00
29245--29290
10
4.5
10
78
21
51
41
0
0
58
0.98
29216--29278
23
2.6
25
78
19
71
50
0
0
49
1.00
29233--29288
22
2.6
22
86
8
71
46
0
0
53
1.00
29244--29323
32
2.5
32
80
14
92
46
1
1
51
1.17
29318--29367
26
1.9
26
84
8
66
44
0
2
54
1.11
29352--29412
28
2.4
23
76
21
68
45
0
1
52
1.10
29431--29475
23
2.0
23
86
0
63
53
2
2
42
1.25
29752--29818
15
4.5
15
79
3
73
35
14
5
43
1.71
29753--29819
30
2.3
30
92
2
109
35
14
4
44
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31138--31168
15
2.1
15
100
0
62
25
0
0
74
0.82
31890--31965
31
2.4
31
80
8
82
38
0
1
60
1.05
46347--46690
177
1.9
177
97
0
643
27
18
13
40
1.88
47005--47100
41
2.3
42
85
5
124
32
20
19
27
1.97
47547--47597
21
2.4
21
96
0
93
17
13
29
39
1.88
49297--49354
20
2.7
20
84
10
71
31
18
22
27
1.97
50270--50393
30
4.1
30
88
2
151
21
21
25
30
1.98
50666--50719
2
27.0
2
100
0
108
50
0
0
50
1.00
56799--56844
21
2.2
21
84
7
58
43
17
28
10
1.82
57179--57306
44
2.9
44
82
0
148
32
21
14
31
1.93
57279--57338
30
2.0
30
83
6
77
31
15
18
35
1.91
57341--57580
43
5.6
42
80
5
250
31
22
18
27
1.97
68386--68426
21
2.0
21
95
0
73
29
34
19
17
1.94
68440--68621
42
4.5
42
76
12
207
21
18
24
34
1.96
68432--68561
21
6.3
21
81
8
151
20
18
28
32
1.96
68432--68621
63
3.1
60
77
14
176
22
18
25
34
1.96
68834--68871
20
1.9
20
94
0
67
36
15
21
26
1.93
70877--70922
17
2.7
17
77
16
51
30
0
4
65
1.12
70886--70964
17
4.7
16
74
12
61
37
0
3
58
1.16
70911--70979
33
2.2
31
86
5
93
39
0
1
59
1.06
70940--70992
15
3.5
15
76
7
54
41
0
1
56
1.10
71093--71157
26
2.4
27
82
5
69
30
0
4
64
1.14

Tables:   1

The End!