genome.fa.s3779.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003779.1 Hibiscus syriacus cultivar Beakdansim tig00008089_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79433

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5952--5980	15	2.0	15	93	6	51	75	3	20	0	0.94
11972--12011	19	2.1	19	100	0	80	42	17	0	40	1.49
14557--14595	20	2.0	20	90	5	62	84	10	5	0	0.76
14569--14615	16	2.8	18	84	15	73	80	10	8	0	0.89
14558--14616	24	2.7	22	76	10	59	83	10	6	0	0.82
22552--22614	30	2.1	30	84	0	81	31	6	20	41	1.77
28757--28811	3	17.7	3	85	7	74	67	0	1	30	1.01
28757--28813	29	2.0	29	89	3	89	66	0	1	31	1.02
32602--32639	16	2.4	16	82	4	51	63	0	5	31	1.17
32803--32858	21	2.6	21	80	11	60	60	0	3	35	1.14
33301--33400	35	2.8	36	86	6	130	31	16	15	38	1.89
33861--34580	109	6.9	105	78	8	630	22	20	24	32	1.98
33861--34580	206	3.4	205	77	10	616	22	20	24	32	1.98
34333--34516	98	1.9	98	88	0	278	17	21	25	34	1.96
34403--34740	160	2.1	160	96	0	622	20	22	25	31	1.98
35242--35422	65	2.8	65	93	0	308	36	12	20	30	1.89
35307--35662	102	3.5	102	93	0	604	36	12	20	29	1.90
35372--35680	37	8.9	37	69	17	232	36	13	21	28	1.91
35428--35587	50	3.2	50	63	7	124	36	13	20	30	1.90
36548--36596	22	2.2	22	96	0	89	26	12	24	36	1.91
37207--37266	20	2.9	21	80	7	61	1	13	6	78	1.02
37223--37275	23	2.4	22	84	6	72	0	15	5	79	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40614--40651	16	2.4	16	82	4	51	63	0	5	31	1.17
41310--41409	35	2.7	35	86	6	119	31	16	16	37	1.90
43578--43619	22	2.0	22	90	4	68	54	4	4	35	1.42
44356--44387	14	2.2	15	94	5	57	50	0	0	50	1.00
45805--45861	3	18.7	3	82	10	71	64	0	0	35	0.93
45808--45868	9	6.7	9	78	10	52	65	0	0	34	0.93
45806--45868	12	5.4	12	71	21	53	66	0	0	33	0.92
46094--46991	113	8.0	113	86	4	1153	29	18	14	38	1.90
46094--46953	228	3.8	224	89	3	1182	29	18	13	38	1.89
47393--47467	22	3.4	22	88	0	114	37	13	16	33	1.87
47853--47928	40	1.9	40	91	0	125	31	21	11	35	1.89
50010--50436	114	3.7	114	96	0	773	31	20	15	31	1.94
53010--53061	2	26.0	2	100	0	104	50	0	0	50	1.00
55945--55982	14	2.7	14	83	0	58	52	0	15	31	1.43
58347--58386	14	3.1	13	82	10	55	60	0	0	40	0.97
59739--59777	14	2.8	14	100	0	78	7	20	38	33	1.81
59821--59874	3	17.7	3	77	11	56	62	0	0	37	0.95
59821--59881	12	5.5	12	72	21	53	63	0	0	36	0.94
59825--59881	9	6.6	9	75	18	50	64	0	0	35	0.93
63053--63206	74	2.1	74	97	0	290	50	16	5	26	1.68
63761--63825	32	2.0	32	100	0	130	24	15	15	44	1.85
63973--64048	29	2.6	29	95	0	143	44	22	18	14	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66077--66177	4	26.2	4	72	16	63	75	1	0	21	0.97
66083--66116	10	3.3	10	87	4	50	79	0	2	17	0.86
66077--66166	15	6.7	13	75	15	67	75	1	1	22	0.93
66079--66238	37	4.1	39	76	16	109	68	2	1	26	1.12
66093--66210	35	3.4	36	77	16	101	69	1	1	27	1.07
66078--66182	25	4.0	27	75	20	75	73	1	1	22	1.03
66117--66264	43	3.5	40	71	14	111	66	3	2	27	1.18
66270--66315	23	2.0	24	83	12	60	67	4	8	19	1.35
66769--66879	36	3.0	37	90	2	161	33	12	11	42	1.79
67470--67551	33	2.4	34	95	4	148	34	9	18	37	1.84
67537--67664	37	3.7	36	69	22	110	36	13	21	28	1.91
67608--67682	15	4.5	15	70	20	60	40	16	21	22	1.91
67608--67716	52	2.1	52	87	0	155	42	16	18	22	1.89
67541--67682	67	2.1	67	81	5	162	38	14	21	25	1.91
67655--67845	102	1.9	103	83	3	251	40	13	19	26	1.88
67756--67872	37	3.2	37	92	1	200	36	11	21	29	1.89
68479--68557	31	2.5	31	83	2	95	36	24	10	29	1.88
70126--70179	21	2.6	21	100	0	108	18	38	24	18	1.93

Tables:   1

The End!