genome.fa.s3780.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003780.1 Hibiscus syriacus cultivar Beakdansim tig00008092_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67094

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1120--1182	22	2.8	22	90	2	99	19	28	28	23	1.98
3281--3323	17	2.6	16	78	7	50	39	0	23	37	1.55
4189--4232	20	2.1	21	87	4	63	31	29	22	15	1.95
5884--5950	22	3.0	22	91	2	107	19	28	28	23	1.98
7729--7768	21	1.9	22	90	10	66	12	10	40	37	1.77
7797--7838	21	2.0	21	86	9	59	23	26	19	30	1.98
8055--8114	29	2.0	31	87	6	88	41	15	6	36	1.73
8224--8262	20	2.0	20	89	0	60	48	10	12	28	1.74
10618--10659	21	2.0	21	95	0	75	19	26	23	30	1.98
10843--10902	29	2.0	31	87	6	88	41	15	6	36	1.73
12347--12371	13	1.9	13	100	0	50	16	8	20	56	1.65
14321--14403	42	2.0	42	92	0	139	27	21	20	30	1.98
14366--14578	80	2.7	80	90	0	327	30	18	20	30	1.96
14988--15249	53	4.9	53	92	0	416	30	22	26	20	1.98
17276--17304	2	15.0	2	92	7	51	51	0	0	48	1.00
18272--18479	20	10.2	20	74	14	160	43	21	19	15	1.88
18348--18479	42	3.2	42	92	2	223	40	22	19	16	1.91
18272--18479	42	5.1	40	79	12	210	43	21	19	15	1.88
18575--18677	6	17.5	6	95	4	192	33	50	16	0	1.45
19176--19256	6	13.5	6	100	0	162	0	16	50	33	1.45
19352--19819	20	23.2	20	81	12	502	15	19	23	41	1.89
25087--25130	2	22.0	2	100	0	88	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28396--28453	18	3.2	19	74	18	59	58	3	0	37	1.15
31970--32101	41	3.2	41	78	16	164	35	21	20	22	1.96
33621--33713	41	2.2	42	80	1	107	23	18	21	36	1.95
40959--41001	21	2.0	21	95	0	77	44	25	30	0	1.55
41357--41580	43	5.2	42	80	7	173	33	23	16	25	1.95
41382--41579	86	2.3	86	81	6	231	34	24	15	24	1.95
41382--41594	43	5.0	43	79	5	189	34	25	15	24	1.95
42295--42353	20	2.9	21	75	9	59	33	11	20	33	1.89
46827--46862	3	12.0	3	100	0	72	66	0	0	33	0.92
49149--49205	23	2.4	24	82	5	89	35	24	17	22	1.95
58257--58353	16	6.1	16	88	0	149	59	20	11	8	1.57
58257--58353	32	3.0	32	95	0	167	59	20	11	8	1.57
58580--58669	11	8.0	11	67	18	51	27	21	22	28	1.99
58601--58663	23	2.7	23	87	0	90	25	20	22	31	1.98
59896--60024	7	18.4	7	83	3	98	20	0	31	48	1.49
59898--60022	21	5.9	20	80	10	110	20	0	29	50	1.48
61040--61068	13	2.2	13	100	0	58	37	13	10	37	1.79
63090--63129	21	1.9	21	84	0	53	57	5	5	32	1.42
63876--63915	2	21.5	2	85	14	59	45	0	0	55	0.99
64682--64732	15	3.4	16	81	10	54	72	0	7	19	1.08
65152--65190	12	3.1	12	88	7	51	66	5	2	25	1.25
66169--67094	104	9.0	103	87	6	1280	22	18	26	32	1.97

Tables:   1

The End!