genome.fa.s3781.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003781.1 Hibiscus syriacus cultivar Beakdansim tig00008095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70594

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1455--1502	21	2.4	21	89	6	73	20	18	14	45	1.85
1810--1873	27	2.3	29	84	7	80	40	12	23	23	1.88
3231--3278	24	2.0	24	100	0	96	20	29	16	33	1.95
5725--5764	22	1.9	21	85	10	55	60	7	5	27	1.45
11837--11888	20	2.5	21	84	3	70	38	19	26	15	1.91
11877--12011	20	6.7	20	80	7	121	33	24	17	24	1.96
11874--12005	61	2.2	61	87	0	183	35	24	16	23	1.95
12178--12221	22	2.0	22	91	8	72	22	45	13	18	1.84
12178--12229	22	2.5	21	84	12	63	23	44	11	21	1.84
12483--12520	20	1.9	20	88	0	58	13	15	21	50	1.78
12657--12711	25	2.2	24	78	15	58	20	9	18	52	1.71
13838--13882	18	2.5	18	88	0	72	26	44	15	13	1.83
14364--14409	20	2.3	20	84	0	56	36	23	21	17	1.94
14419--14476	14	3.9	14	79	16	71	48	24	17	10	1.78
14403--14493	32	2.8	33	94	3	166	47	21	18	12	1.81
14510--14568	14	3.9	14	76	20	64	10	16	23	49	1.77
14505--14584	33	2.4	33	97	0	151	11	18	22	47	1.80
14569--14624	20	2.8	19	86	7	76	16	25	23	35	1.94
15764--15876	42	2.7	42	80	0	154	24	15	38	21	1.93
16095--16278	91	2.0	90	90	5	289	47	19	11	21	1.81
17964--18095	19	7.1	19	80	11	130	42	20	24	12	1.87
17989--18088	52	1.9	53	89	2	157	40	23	25	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18091--18156	18	3.5	19	83	4	80	10	15	25	48	1.77
18102--18153	19	2.7	19	88	5	70	11	17	25	46	1.81
18821--18861	21	2.0	21	85	0	55	34	31	17	17	1.93
19289--19394	43	2.5	43	85	1	151	31	11	42	15	1.82
32412--32491	41	2.0	41	100	0	160	33	16	15	35	1.90
34078--34140	29	2.2	29	91	0	99	28	33	12	25	1.92
34677--34859	60	3.1	57	76	10	145	32	19	6	40	1.77
34981--35164	60	3.1	57	79	9	165	45	4	16	33	1.69
42534--42674	70	2.0	70	92	0	237	36	14	18	30	1.91
55312--55408	30	3.2	30	88	1	113	24	20	22	31	1.98
55339--55411	30	2.4	30	95	0	128	24	20	24	30	1.99
57477--57520	20	2.2	20	87	0	61	43	20	0	36	1.52
61884--61966	22	3.8	22	76	12	82	34	16	20	27	1.94
64731--64782	23	2.4	22	80	6	61	55	0	7	36	1.29
65859--65904	22	2.1	22	88	4	67	32	10	0	56	1.34
69237--69313	31	2.5	31	86	0	109	28	11	12	46	1.77
69650--69685	12	2.8	13	87	12	56	22	0	0	77	0.76
70050--70124	27	3.1	24	85	12	93	44	5	0	50	1.24
70061--70123	25	2.4	27	89	10	96	46	4	0	49	1.23

Tables:   1

The End!