genome.fa.s3783.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003783.1 Hibiscus syriacus cultivar Beakdansim tig00008098_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76338

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306--369	12	5.4	12	88	1	67	37	6	34	21	1.79
303--369	6	11.3	6	80	3	55	38	5	34	20	1.77
318--373	3	19.0	3	81	3	69	37	3	33	25	1.73
1545--1578	16	2.1	16	88	0	50	47	8	20	23	1.78
1955--2434	179	2.7	179	90	5	738	34	14	17	33	1.90
5282--5354	23	3.2	23	84	0	92	34	4	20	41	1.72
6046--6082	18	2.1	18	89	0	56	32	5	10	51	1.60
6038--6084	24	2.0	24	86	0	67	34	4	14	46	1.64
6336--6422	39	2.2	39	93	0	147	48	19	13	18	1.81
6840--6898	23	2.6	23	91	0	91	37	5	18	38	1.73
7255--7313	23	2.6	23	91	0	91	37	5	18	38	1.73
7669--7727	23	2.6	23	91	0	91	37	5	18	38	1.73
6638--8505	415	4.5	416	95	2	3277	41	8	11	38	1.72
8080--8152	23	3.2	23	92	0	119	34	5	21	38	1.77
6638--8505	839	2.2	829	94	2	3262	41	8	11	38	1.72
10284--10331	22	2.2	22	96	0	87	31	20	16	31	1.95
11495--11541	22	2.1	22	96	0	85	19	23	14	42	1.88
21725--21791	31	2.2	31	86	0	89	49	10	13	26	1.74
27756--27822	34	1.9	35	85	8	93	19	11	19	49	1.79
34619--34756	21	6.7	21	69	6	59	34	25	18	21	1.96
34724--35092	20	18.5	20	84	4	449	34	26	18	20	1.96
35775--35821	24	2.0	24	87	8	69	25	14	21	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38301--38604	19	17.4	19	79	16	349	46	18	21	14	1.84
38329--38604	51	5.2	52	92	6	361	46	17	21	14	1.84
38301--38626	89	3.8	88	86	8	389	46	18	21	14	1.84
38301--38626	51	6.3	54	86	11	299	46	18	21	14	1.84
38633--38734	19	5.6	19	85	12	151	14	23	17	44	1.86
38837--38876	14	2.8	14	88	3	62	42	22	0	35	1.54
40854--40910	14	3.7	14	77	20	60	45	22	21	10	1.82
40835--40927	33	2.8	33	93	0	159	47	21	19	11	1.81
40798--40932	19	7.6	19	76	16	119	45	23	18	11	1.82
40928--41056	19	7.3	19	75	17	125	8	17	28	45	1.77
40928--41019	33	2.8	33	93	3	150	7	18	28	45	1.76
41100--41663	92	6.1	93	98	0	1098	46	18	12	22	1.83
41100--41663	185	3.0	186	98	1	1098	46	18	12	22	1.83
41100--41663	277	2.0	278	98	1	1096	46	18	12	22	1.83
43217--43306	14	5.7	14	74	23	81	42	23	25	8	1.83
43209--43323	33	3.5	33	95	0	212	45	20	24	9	1.81
43216--43328	19	6.8	18	72	23	88	43	22	24	9	1.83
43340--43394	14	3.6	14	73	21	56	9	25	23	41	1.83
43324--43394	33	2.2	33	94	0	124	8	22	25	43	1.81
43335--43416	33	2.5	33	89	2	119	9	25	21	42	1.84
43347--43435	20	4.8	20	72	19	75	12	24	19	43	1.85
43518--43586	32	2.2	32	91	0	111	46	20	21	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43537--43586	16	3.0	18	69	22	54	44	22	22	12	1.85
43764--43818	22	2.5	22	81	0	74	20	16	40	23	1.91
43964--44156	20	9.6	20	82	5	219	19	19	25	35	1.95
43964--44156	60	3.2	60	83	0	251	19	19	25	35	1.95
44212--44263	20	2.6	20	96	0	95	21	13	26	38	1.90
46316--46363	22	2.3	21	80	13	55	54	2	2	41	1.24
46435--46679	111	2.2	110	90	2	384	31	26	19	23	1.98
51556--51596	16	2.6	16	88	3	57	39	12	19	29	1.88
63777--63825	24	2.0	24	100	0	98	38	16	16	28	1.90
64683--64709	13	2.1	13	100	0	54	25	22	29	22	1.99
67702--67825	25	5.0	25	96	2	216	28	15	20	36	1.93
67954--67999	3	15.7	3	82	13	60	65	0	0	34	0.93
68172--68360	43	4.4	44	69	15	133	23	19	30	26	1.98

Tables:   1

The End!