Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003785.1 Hibiscus syriacus cultivar Beakdansim tig00008103_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48890

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3648--3682
7
5.0
7
100
0
70
28
42
14
14
1.84
13128--13277
72
2.1
71
93
1
255
41
10
13
35
1.78
14856--14902
23
2.0
23
88
8
69
46
27
10
14
1.78
17159--17195
6
6.2
6
100
0
74
48
0
51
0
1.00
17224--17289
32
2.1
32
85
0
87
12
28
22
36
1.90
23591--23635
21
2.1
21
87
0
63
31
28
24
15
1.96
23661--23705
22
2.0
22
82
4
54
31
31
26
11
1.91
24310--24494
31
6.0
31
96
1
327
20
19
22
38
1.94
27936--27980
21
2.1
21
87
0
63
31
28
24
15
1.96
28656--28871
31
7.0
31
97
1
398
19
19
22
38
1.93
35824--35868
19
2.4
19
92
0
72
22
33
15
28
1.95
36044--36087
21
2.1
21
91
0
70
38
4
25
31
1.76
38056--38098
12
3.7
12
76
17
54
27
6
0
65
1.18
40016--40062
23
2.1
23
84
7
62
34
14
14
36
1.88
39989--40236
130
1.9
130
92
0
415
35
12
15
36
1.85
40629--40704
35
2.2
35
90
0
116
35
1
25
38
1.64
41957--42009
25
2.1
25
86
6
72
32
24
22
20
1.98
42135--42180
24
1.9
24
90
0
74
28
23
26
21
1.99
42473--42516
19
2.3
20
80
11
56
34
22
4
38
1.75
42786--43210
216
2.0
215
92
2
719
31
19
12
36
1.89
45928--45979
23
2.3
22
83
9
61
44
1
0
53
1.11
45865--46060
106
1.9
106
81
4
245
38
8
8
44
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46727--46760
17
2.0
17
100
0
68
41
11
17
29
1.85
47722--47761
21
1.9
21
94
0
71
20
10
7
62
1.50
48712--48752
19
2.2
19
90
0
64
41
4
12
41
1.64

Tables:   1

The End!