genome.fa.s3786.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003786.1 Hibiscus syriacus cultivar Beakdansim tig00008104_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57934

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3300--3342	14	3.1	14	80	3	52	48	11	4	34	1.60
4120--4182	20	2.9	20	77	15	63	23	26	19	30	1.98
4120--4184	24	2.9	22	80	13	71	24	26	18	30	1.98
6201--6246	10	4.7	10	74	15	51	23	2	6	67	1.25
5903--6980	316	3.4	311	83	10	1328	41	3	4	50	1.40
6506--6564	27	2.2	26	82	11	66	23	3	3	69	1.19
6705--6797	32	2.9	32	75	13	93	39	0	1	59	1.05
6774--6804	12	2.6	12	94	0	53	58	0	0	41	0.98
6728--6797	37	1.9	36	85	8	97	38	0	0	61	0.96
7343--8071	319	2.3	313	87	6	1024	42	3	4	49	1.41
7924--7968	18	2.4	19	88	7	65	17	0	4	77	0.92
8280--8321	18	2.3	19	83	4	50	59	2	11	26	1.45
27560--27686	37	3.6	37	69	21	119	48	13	12	25	1.78
27609--27717	31	3.4	31	67	19	78	49	11	11	27	1.73
27560--27803	68	3.6	68	89	2	366	48	12	11	27	1.75
36589--36633	20	2.3	19	82	14	56	46	6	4	42	1.50
43767--43887	41	3.0	41	92	0	197	23	18	21	37	1.94
43777--43884	20	5.3	20	69	8	83	19	18	22	39	1.92
43767--43933	41	4.1	40	82	6	185	23	17	20	37	1.94
43767--43934	82	2.0	81	83	6	205	24	17	20	37	1.94
44006--44041	6	6.3	6	96	3	58	30	52	16	0	1.44
44681--44835	20	7.6	20	75	4	157	39	23	20	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44659--44949	41	7.0	41	83	8	363	37	23	19	19	1.95
44676--44860	21	9.0	21	73	4	162	37	23	18	20	1.94
44881--44945	20	3.2	20	65	10	51	35	24	20	20	1.96
44888--44953	21	3.2	21	67	4	62	39	25	18	16	1.91
45093--45145	22	2.3	23	81	15	58	52	1	0	45	1.11
48149--48184	4	9.0	4	100	0	72	75	0	0	25	0.81
48858--48926	2	35.5	2	85	5	97	47	0	4	47	1.21

Tables:   1

The End!