genome.fa.s3788.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003788.1 Hibiscus syriacus cultivar Beakdansim tig00008108_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55456

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3487--3526	20	2.0	21	85	14	57	25	2	5	67	1.23
4394--4451	24	2.4	24	83	8	73	22	5	5	67	1.31
4668--4704	13	2.8	13	91	4	56	10	10	18	59	1.59
4668--4709	14	3.1	14	86	6	59	9	9	19	61	1.53
4885--4923	10	3.9	10	86	0	60	17	12	10	58	1.61
4885--4922	20	1.9	20	94	0	67	18	13	10	57	1.63
4885--5011	57	2.2	57	76	15	138	14	14	14	55	1.70
4997--5028	14	2.3	14	94	0	55	9	15	18	56	1.66
4885--5031	24	6.4	23	76	4	120	14	14	15	55	1.69
9768--9900	64	2.1	64	98	0	257	42	11	13	33	1.80
11165--11231	31	2.2	31	89	7	102	47	17	13	20	1.81
18951--19493	267	2.0	267	98	0	1050	30	11	16	41	1.84
19743--19815	22	3.5	22	72	7	53	50	0	0	49	1.00
19736--19832	50	2.0	49	80	10	108	50	1	0	48	1.07
22992--23747	127	6.0	126	85	4	959	22	21	23	32	1.98
22992--23743	252	3.0	252	87	2	1003	22	21	23	33	1.98
22992--23736	378	2.0	380	88	3	1108	22	21	22	33	1.98
23982--24421	217	2.0	219	92	2	726	45	8	6	39	1.60
26674--26720	25	1.9	24	83	12	60	61	2	2	34	1.20
26737--26771	14	2.6	14	90	4	54	57	0	0	42	0.99
26754--26795	22	2.0	21	86	13	59	64	7	0	28	1.20
29015--29092	31	2.5	31	91	0	120	28	28	10	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30273--30344	32	2.3	31	90	4	110	33	22	19	25	1.97
33988--34061	31	2.4	31	88	0	112	33	13	25	27	1.93
42669--42751	26	3.2	26	75	0	76	32	6	19	42	1.75
46468--46832	84	4.3	84	87	1	500	23	18	23	34	1.96
46930--47277	124	2.8	123	88	1	489	26	16	25	31	1.97
47407--47801	124	3.2	124	86	3	537	26	16	24	32	1.96
46795--47755	480	2.0	480	100	0	1922	26	16	23	32	1.96
47769--48001	64	3.6	64	84	1	288	30	13	20	35	1.91
49195--49219	12	2.1	12	100	0	50	40	16	0	44	1.47
49914--49971	21	2.7	22	72	15	59	22	6	8	62	1.48
50214--50272	27	2.2	26	84	3	73	22	8	3	66	1.34
50236--50289	26	2.0	28	89	7	85	22	9	0	68	1.17
52559--52611	22	2.6	20	78	18	56	58	9	9	22	1.58
53851--54206	124	2.9	122	87	4	498	26	16	24	32	1.96
54247--54439	64	3.0	64	92	0	314	28	13	23	34	1.93

Tables:   1

The End!