genome.fa.s3789.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003789.1 Hibiscus syriacus cultivar Beakdansim tig00008110_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83272

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3192--3251	31	2.0	31	86	3	86	28	20	18	33	1.96
3205--3296	30	3.0	30	83	1	94	27	19	22	30	1.98
3240--3312	30	2.4	30	95	0	128	24	20	24	30	1.99
9824--9894	22	3.2	21	80	7	79	36	15	19	28	1.92
9832--9906	22	3.4	22	75	3	80	33	17	18	30	1.94
12675--12726	23	2.4	22	80	6	61	55	0	7	36	1.29
15446--15479	16	2.1	17	88	5	52	64	0	0	35	0.94
16028--16061	16	2.1	17	88	5	52	35	0	0	64	0.94
17215--17291	31	2.5	31	86	0	109	28	11	12	46	1.77
17633--17671	12	2.9	14	81	14	55	23	0	0	76	0.78
18047--18113	25	2.9	23	75	22	68	41	5	0	52	1.26
18055--18113	21	2.6	22	85	15	84	42	6	0	50	1.28
18059--18127	25	2.6	27	78	21	83	42	5	0	52	1.25
18055--18129	27	3.1	24	85	12	84	42	5	0	52	1.24
18066--18128	25	2.4	27	84	10	87	44	4	0	50	1.23
19454--19623	81	2.0	81	82	6	198	40	23	11	24	1.87
24938--24968	5	6.2	5	100	0	62	0	19	58	22	1.40
26303--26375	38	1.9	38	100	0	146	45	2	5	46	1.40
33730--33770	18	2.3	18	87	4	57	60	2	7	29	1.36
33910--34031	50	2.4	50	83	8	140	24	27	27	19	1.99
34007--34121	51	2.3	51	78	3	115	21	29	33	14	1.94
35813--35871	23	2.6	22	84	5	73	40	0	5	54	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44397--44799	41	9.9	41	76	7	284	29	19	18	33	1.95
44429--44721	82	3.6	83	78	6	321	29	19	17	34	1.95
44436--44799	165	2.2	165	85	2	468	29	19	18	33	1.95
44413--44828	42	10.2	41	75	7	301	30	20	17	32	1.95
48928--48986	21	2.8	21	84	0	73	18	5	20	55	1.61
49133--49402	43	6.3	43	86	2	335	28	22	21	27	1.99
50212--50255	24	1.9	22	86	9	61	56	0	2	40	1.11
50212--50255	23	1.9	23	86	9	63	56	0	2	40	1.11
54213--54440	69	3.3	68	83	6	241	23	23	20	32	1.98
56278--56434	63	2.5	62	82	5	181	33	21	22	22	1.98
56946--58743	903	2.0	903	99	0	3587	31	14	21	32	1.93
59190--59229	20	2.0	20	90	0	62	30	20	10	40	1.85
59486--59523	20	1.9	20	88	0	58	42	15	15	26	1.87
64748--64822	35	2.1	35	90	0	114	45	22	0	32	1.53
67136--67224	34	2.7	32	77	10	90	39	0	2	58	1.11
68943--68990	21	2.3	21	85	0	60	25	39	12	22	1.89
68994--69087	21	4.5	21	92	5	129	18	35	26	20	1.95
69610--69712	33	3.1	34	84	5	138	55	4	2	36	1.36
70093--70697	126	4.8	126	97	0	1147	32	20	25	21	1.98
73769--73817	25	2.0	25	84	8	64	46	2	0	51	1.12
73781--73817	12	3.0	12	84	7	56	45	0	0	54	1.00
73831--73888	23	2.6	23	94	5	102	44	12	3	39	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74219--74408	75	2.5	75	81	6	233	49	14	6	29	1.69
74698--74749	20	2.5	21	81	3	61	40	19	23	17	1.91
74780--74832	20	2.7	20	93	0	88	24	28	20	26	1.99
75386--75427	19	2.2	19	86	0	57	50	28	16	4	1.66
75423--75553	19	7.1	19	84	10	182	11	22	19	46	1.81
75423--75528	33	3.1	33	83	12	149	10	23	20	45	1.82
77003--77133	63	2.1	63	100	0	262	20	18	37	23	1.94
77756--77822	21	3.2	21	66	6	55	23	35	20	19	1.95
77704--77822	42	2.8	42	81	5	107	22	36	18	22	1.95
79175--79209	14	2.6	14	95	4	63	31	0	25	42	1.55
79334--79389	14	3.7	14	76	17	58	44	23	25	7	1.78
79316--79404	32	2.7	33	89	3	135	43	21	22	12	1.85
79400--79530	19	7.7	19	67	23	103	15	22	19	42	1.88
79404--79530	33	3.9	32	85	8	184	15	22	18	42	1.89
79397--79529	66	2.0	66	95	0	239	17	22	18	41	1.90
81971--82017	24	2.0	24	91	0	76	34	17	19	29	1.94
81975--82026	24	2.2	24	82	0	59	36	19	17	26	1.94
83050--83107	20	2.9	20	97	0	107	37	24	22	15	1.93
83126--83201	32	2.4	33	84	4	93	13	22	22	42	1.88

Tables:   1

The End!