Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003791.1 Hibiscus syriacus cultivar Beakdansim tig00008114_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75070

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
119--266
18
7.9
18
86
8
197
22
20
28
28
1.99
119--269
39
3.9
39
91
4
236
23
20
27
28
1.99
119--270
57
2.7
56
82
10
200
23
20
27
28
1.99
5130--5220
18
4.9
18
80
7
110
19
20
31
27
1.97
5130--5220
39
2.4
36
83
5
110
19
20
31
27
1.97
10081--10145
2
32.5
2
100
0
130
50
0
0
49
1.00
12574--12610
15
2.5
15
100
0
74
24
29
21
24
1.99
21125--21233
19
5.4
19
79
13
92
33
28
3
34
1.75
21235--21295
21
3.0
21
87
2
79
22
19
26
31
1.98
23921--23986
26
2.6
26
92
2
107
50
7
7
34
1.59
31161--31264
22
4.7
22
88
3
138
25
31
25
17
1.97
36967--36997
13
2.4
13
94
0
53
3
9
9
77
1.10
38074--38126
27
2.0
27
96
0
97
32
18
28
20
1.97
38075--38134
27
2.5
23
78
13
59
35
20
26
18
1.95
43577--43665
2
44.5
2
82
8
101
48
5
0
46
1.26
44073--44254
54
3.4
54
76
8
192
24
23
19
32
1.97
44066--44258
105
1.8
105
84
2
262
25
23
18
32
1.97
44161--44429
55
4.9
55
88
3
346
27
23
16
31
1.96
45425--45492
20
3.4
20
75
22
63
17
10
0
72
1.12
48988--49015
8
3.5
8
100
0
56
50
10
0
39
1.37
56288--56338
15
3.6
15
71
15
54
25
7
3
62
1.40
56287--56351
27
2.4
27
100
0
130
27
6
6
60
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62903--62941
21
1.9
20
84
5
51
48
0
30
20
1.50
63370--63416
20
2.3
21
82
10
62
68
0
4
27
1.08
67263--67307
14
3.0
14
79
17
54
73
0
4
22
1.01
68447--68481
15
2.3
15
95
0
61
37
8
8
45
1.65
68836--68925
46
2.0
44
95
4
162
26
23
15
34
1.95
71681--71714
9
3.7
9
84
7
50
38
0
0
61
0.96
72028--72140
16
6.9
16
95
2
190
47
7
14
30
1.70
72052--72128
8
9.6
8
68
20
54
50
5
11
32
1.61

Tables:   1

The End!