Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003792.1 Hibiscus syriacus cultivar Beakdansim tig00008115_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64423

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
165--197
16
2.1
16
88
5
50
57
0
3
39
1.14
8586--8629
17
2.6
17
85
7
54
25
15
27
31
1.96
8602--8657
21
2.7
21
88
5
78
25
12
30
32
1.92
9336--9387
23
2.3
23
90
6
79
32
17
28
21
1.96
9897--9972
22
3.5
22
96
0
143
21
31
13
34
1.91
23775--23814
16
2.5
16
100
0
80
65
20
0
15
1.28
24181--24233
23
2.3
23
90
0
79
28
20
26
24
1.99
24373--24414
19
2.2
20
86
4
59
61
4
2
30
1.29
29633--29698
24
2.8
24
77
13
66
22
21
21
34
1.96
30760--30801
21
2.0
21
95
0
75
47
7
14
30
1.71
33820--33875
10
5.8
9
78
15
58
17
26
25
30
1.97
33820--33875
20
2.8
20
86
10
87
17
26
25
30
1.97
33889--33950
22
3.0
22
75
22
80
17
50
22
9
1.75
33891--33939
17
2.9
17
93
0
89
18
51
22
8
1.72
38905--38972
30
2.2
30
89
2
100
22
17
13
47
1.82
40452--40566
61
1.9
61
83
1
151
36
1
8
53
1.42
46789--46840
7
7.6
7
78
8
54
50
34
0
15
1.45
46789--46840
21
2.5
21
87
9
72
50
34
0
15
1.45
49403--49469
23
2.8
24
84
4
91
23
26
22
26
2.00
52078--52183
21
5.3
21
67
13
53
42
2
0
53
1.22
52293--52377
18
4.9
18
75
13
88
43
3
5
47
1.44
52285--52385
51
2.0
51
88
3
150
46
2
6
43
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54127--54460
18
20.2
18
70
20
250
41
6
6
46
1.55
54127--54244
47
2.4
50
90
6
181
40
5
6
46
1.55
54175--54462
47
5.9
46
79
12
199
40
6
6
46
1.55
54127--54424
114
2.6
113
84
8
385
40
6
6
45
1.56
54175--54460
96
2.9
96
78
9
310
40
6
6
46
1.55
54367--54588
2
110.5
2
64
20
54
45
4
4
45
1.44
54475--54551
32
2.5
32
89
4
113
54
6
1
37
1.35
54537--54588
9
5.8
9
88
8
70
42
0
3
53
1.19
56109--56618
108
4.8
107
82
6
595
40
11
13
34
1.80
56109--56618
214
2.4
212
83
7
618
40
11
13
34
1.80
62907--62998
20
4.5
20
72
11
71
33
17
16
32
1.92
63026--63063
20
2.0
19
85
10
51
26
23
21
28
1.99

Tables:   1

The End!