Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003794.1 Hibiscus syriacus cultivar Beakdansim tig00008117_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105161

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9827--9914
37
2.3
38
87
11
128
39
28
7
23
1.83
11354--11387
14
2.4
14
85
0
50
35
8
5
50
1.58
11588--11657
33
2.2
29
77
20
70
48
0
4
47
1.21
11906--11973
23
3.0
23
79
14
61
51
1
2
44
1.25
18108--18133
12
2.2
12
100
0
52
19
26
15
38
1.91
18373--18455
2
41.5
2
97
0
157
50
1
0
48
1.08
19541--19579
3
12.7
3
84
15
53
66
2
0
30
1.05
20976--21017
22
2.0
22
90
4
68
4
16
0
78
0.91
20976--21018
15
2.7
15
82
7
50
4
16
0
79
0.90
22819--22865
23
2.0
23
100
0
94
31
29
12
25
1.93
30460--30506
21
2.2
21
96
0
85
14
23
31
29
1.95
31621--31650
9
3.2
9
95
4
51
86
0
0
13
0.57
32438--32463
12
2.2
12
100
0
52
19
26
15
38
1.91
33809--33847
3
12.7
3
84
15
53
66
2
0
30
1.05
34684--34727
22
1.9
24
86
9
65
40
0
2
56
1.11
34684--34729
24
1.9
24
82
8
58
43
0
2
54
1.12
36414--36446
14
2.4
14
100
0
66
15
18
36
30
1.91
38168--38351
76
2.4
76
92
0
298
39
14
14
32
1.85
38349--38524
75
2.3
75
90
1
264
38
13
14
33
1.85
38250--38441
98
1.9
99
91
1
314
37
15
15
31
1.89
38499--38570
23
3.1
23
87
0
99
34
16
13
34
1.89
40097--40152
22
2.5
22
94
0
94
35
19
21
23
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40890--40931
21
2.0
21
86
4
59
23
21
30
23
1.99
41887--42036
73
2.0
74
96
1
275
39
13
13
34
1.83
42330--42354
9
2.8
9
100
0
50
56
0
0
44
0.99
42523--42563
12
3.6
12
74
12
50
17
17
19
46
1.85
46377--46424
22
2.2
22
100
0
96
18
18
16
45
1.85
46418--46463
19
2.4
19
88
0
65
26
17
13
43
1.85
46628--46777
73
2.0
74
96
1
275
40
14
12
33
1.83
48258--48296
11
3.2
12
89
7
53
66
2
0
30
1.05
51753--51807
6
9.2
6
95
0
92
30
49
16
3
1.63
51805--51853
5
9.8
5
93
0
62
16
36
40
6
1.73
57129--57242
57
2.0
57
100
0
228
31
21
28
19
1.97
57775--57829
6
9.2
6
95
0
92
30
49
16
3
1.63
57827--57885
5
11.8
5
94
0
82
16
37
40
5
1.71
63978--64007
6
5.0
6
100
0
60
33
16
0
50
1.46
64006--64096
6
15.2
6
97
0
173
32
49
16
1
1.53
74994--75028
19
1.9
18
88
11
54
60
8
0
31
1.27
77812--77852
19
2.2
19
95
0
73
17
9
26
46
1.79
77927--77975
25
2.0
25
100
0
98
24
24
28
22
1.99
83054--83184
65
2.0
65
89
2
201
38
18
2
40
1.63
83627--83665
15
2.6
15
87
0
51
30
2
20
46
1.64
85286--85407
61
2.0
61
95
0
217
37
13
13
35
1.84
88113--88273
64
2.5
65
86
7
204
33
18
21
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89598--90026
147
2.9
147
96
2
785
28
15
20
35
1.93
91640--91665
2
13.0
2
100
0
52
50
0
0
50
1.00
102110--102141
6
5.7
6
89
10
50
0
50
0
50
1.00
103095--103136
20
2.1
20
86
0
57
30
33
0
35
1.58

Tables:   1

The End!