genome.fa.s3795.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003795.1 Hibiscus syriacus cultivar Beakdansim tig00008118_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  171163

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465--668	45	4.6	45	93	4	335	41	2	12	43	1.55
465--668	87	2.3	89	93	4	342	41	2	12	43	1.55
6584--6632	25	2.0	25	88	8	73	73	0	4	22	1.00
8442--8483	17	2.5	17	88	7	59	80	0	2	16	0.81
8442--8483	20	2.2	19	86	4	57	80	0	2	16	0.81
8455--8496	15	3.0	14	80	10	50	78	2	0	19	0.86
8445--8502	26	2.2	26	82	8	73	79	1	1	17	0.90
8459--8502	16	2.7	16	82	3	52	81	2	0	15	0.78
8535--8769	35	6.8	36	79	13	201	44	10	3	41	1.55
8618--8679	26	2.5	26	84	7	85	48	8	1	41	1.42
8586--8714	61	2.2	59	91	6	208	46	7	2	43	1.45
8700--8727	14	2.0	14	100	0	56	42	7	7	42	1.59
8639--8751	37	3.0	37	84	8	149	44	8	3	43	1.52
8793--8861	30	2.2	30	82	15	86	34	7	17	40	1.77
8940--9059	21	5.7	21	82	9	147	22	35	20	21	1.96
8940--9061	42	2.9	43	87	2	167	22	36	19	22	1.96
9080--9224	21	7.0	21	88	3	163	20	25	26	27	1.99
9318--9357	20	1.9	21	85	10	55	37	37	10	15	1.80
9873--9964	37	2.4	38	83	5	114	42	13	5	39	1.67
9954--9987	2	17.0	2	100	0	68	50	0	0	50	1.00
10008--10095	40	2.3	37	86	5	122	47	9	1	42	1.42
11335--11401	20	3.3	20	73	8	55	28	28	14	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11384--11529	21	6.9	22	78	12	128	21	21	22	34	1.97
11391--11529	42	3.3	42	81	7	165	22	21	22	33	1.97
11390--11516	65	2.0	64	92	6	211	20	20	22	36	1.95
12264--12300	6	6.5	6	96	3	60	0	16	54	29	1.43
12384--12473	21	4.3	21	85	0	99	30	24	22	23	1.99
12393--12472	42	1.9	42	86	0	115	32	26	21	20	1.97
13508--13576	34	2.0	34	94	0	120	34	27	1	36	1.66
13687--13741	21	2.6	21	88	2	83	40	18	12	29	1.87
26621--26694	38	1.9	38	83	5	96	41	5	13	39	1.67
27079--27126	22	2.2	22	96	0	87	25	45	6	22	1.75
27205--27249	16	2.8	16	89	3	63	22	0	2	75	0.91
27484--27617	19	7.4	19	81	10	117	11	16	21	50	1.76
27513--27559	14	3.3	14	91	5	76	6	19	25	48	1.72
27494--27558	15	4.1	15	84	11	78	7	16	24	50	1.71
27541--27617	39	2.0	40	92	2	129	11	16	18	53	1.73
27541--27617	20	3.9	20	84	3	111	11	16	18	53	1.73
29360--29457	21	4.6	23	69	12	59	20	13	34	31	1.91
29335--29456	63	1.9	63	81	6	149	22	12	34	31	1.91
29755--29934	21	8.6	21	75	7	168	22	36	18	22	1.95
29757--29914	63	2.5	63	92	2	255	22	36	19	22	1.96
29757--29934	42	4.2	41	81	3	187	21	37	19	21	1.95
31752--31787	18	2.0	18	94	0	63	16	2	22	58	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32661--32708	18	2.7	18	74	6	53	45	8	8	37	1.64
33087--33136	25	2.0	25	96	0	91	44	22	8	26	1.80
33156--33206	20	2.5	20	96	0	93	39	7	29	23	1.83
35878--35911	12	2.8	12	90	0	50	14	0	29	55	1.40
36684--36792	20	5.5	19	78	11	80	33	12	23	29	1.92
36724--36876	20	7.6	20	84	5	159	30	13	24	32	1.93
52290--52341	22	2.4	22	83	0	59	28	15	26	28	1.96
52461--52502	16	2.6	16	88	0	57	45	11	30	11	1.77
56433--56498	34	1.9	35	84	9	91	21	19	21	37	1.94
64160--64195	15	2.3	15	90	4	54	55	0	27	16	1.42
65738--65781	6	7.2	6	84	5	61	2	15	2	79	0.93
65738--65789	19	2.7	19	88	5	70	1	15	5	76	1.05
69780--69824	6	7.2	6	90	5	63	0	22	0	77	0.76
69780--69821	7	6.1	7	84	13	52	0	23	0	76	0.79
75676--75720	11	4.2	11	85	5	56	57	0	31	11	1.33
78652--78693	22	1.9	22	90	0	66	19	2	42	35	1.64
78890--78932	20	2.2	20	95	4	79	46	4	11	37	1.61
89236--89277	21	1.9	21	85	9	57	26	0	35	38	1.57
93449--93490	13	3.4	12	80	12	50	9	14	2	73	1.18
93465--93515	18	2.9	18	82	11	61	3	15	3	76	1.08
98671--98707	19	1.9	19	88	0	56	0	13	2	83	0.74
98891--98932	5	8.2	5	89	5	57	61	0	23	14	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98891--98934	15	2.8	16	79	6	63	61	0	25	13	1.32
99060--99118	32	1.9	30	86	6	82	33	0	42	23	1.55
100751--100820	30	2.3	30	97	0	131	50	0	21	28	1.49
104557--104604	19	2.5	19	89	3	78	43	6	10	39	1.64
106444--106661	104	2.1	104	99	0	427	42	12	16	28	1.85
106489--106655	51	3.2	50	68	19	153	43	11	17	27	1.83
109203--109301	29	3.2	29	68	18	83	37	20	26	16	1.93
109203--109342	63	2.2	63	96	0	253	36	20	25	17	1.94
109231--109335	34	3.2	34	69	17	114	33	21	26	18	1.96
110420--110654	117	2.0	117	94	0	407	41	11	16	30	1.84
111449--111477	10	2.9	10	100	0	58	37	10	20	31	1.86
115401--115449	23	2.1	23	85	7	64	57	10	4	28	1.50
118705--118753	20	2.6	19	77	6	55	61	0	20	18	1.35
125620--125668	23	2.1	23	85	7	64	57	12	2	28	1.46
127440--127510	18	3.9	18	84	0	97	22	15	30	30	1.95
129820--129857	20	1.9	20	94	0	67	23	18	23	34	1.96
140972--141063	42	2.2	42	96	0	166	15	16	25	43	1.86
147041--147067	8	3.4	8	100	0	54	0	33	0	66	0.92
159647--159677	8	3.9	8	95	0	53	6	51	3	38	1.44
165150--165193	23	1.9	23	86	9	63	36	13	9	40	1.76
167640--167685	21	2.2	21	92	0	74	19	4	26	50	1.66
167649--167698	21	2.4	21	89	0	73	22	6	24	48	1.73

Tables:   1

The End!