Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003797.1 Hibiscus syriacus cultivar Beakdansim tig00008122_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95097

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5585--5630
8
5.2
9
79
12
51
58
2
0
39
1.10
5569--5656
17
5.4
16
73
15
65
59
1
1
38
1.13
5578--5646
7
9.3
7
72
20
52
56
1
1
40
1.17
7186--7218
11
3.0
11
86
13
50
39
0
0
60
0.97
7185--7218
14
2.4
14
90
9
52
38
0
0
61
0.96
7552--7642
19
4.7
19
66
15
62
58
1
1
39
1.13
7576--7633
7
7.6
7
76
14
53
55
1
1
41
1.20
16381--16423
20
2.2
20
95
0
77
13
34
6
44
1.72
28134--28501
126
2.8
126
83
12
415
46
9
8
34
1.68
28650--28737
11
7.8
11
70
22
58
64
3
0
31
1.10
28650--28737
33
2.6
32
77
19
90
64
3
0
31
1.10
30227--30276
3
16.3
3
83
4
64
62
0
0
38
0.96
30436--30831
76
5.2
77
92
2
633
32
21
22
23
1.98
30436--30843
153
2.7
152
91
3
633
33
21
22
23
1.98
30773--30865
47
2.0
47
97
0
177
30
21
24
23
1.99
31545--31599
22
2.5
22
90
0
92
38
14
12
34
1.84
33808--34033
114
2.0
114
91
0
371
30
20
15
33
1.93
40809--40862
16
3.6
15
83
14
67
72
0
1
25
0.95
41374--41740
124
2.8
128
82
12
426
46
9
8
35
1.68
41876--41922
23
2.0
24
87
4
69
65
2
0
31
1.04
43455--43503
2
24.5
2
100
0
98
51
0
0
48
1.00
43501--43548
3
15.7
3
82
4
60
62
0
0
37
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44673--44778
2
52.5
2
69
15
58
46
3
7
42
1.50
50513--50590
31
2.5
31
78
2
75
23
8
20
47
1.78
51265--51372
32
3.3
33
80
7
107
16
14
25
42
1.87
52045--52093
24
2.0
24
84
11
64
34
14
6
44
1.70
63288--63319
17
1.9
17
93
6
57
34
0
0
65
0.93
63678--63724
18
2.7
18
80
3
51
36
8
25
29
1.86
63994--64111
62
1.9
61
81
8
141
39
33
12
14
1.84
65115--65402
75
3.9
73
76
14
227
43
4
6
44
1.51
65129--65543
35
11.9
32
73
17
180
43
4
6
45
1.50
65556--65600
18
2.5
19
75
13
51
13
6
4
75
1.15
74661--74755
43
2.2
43
84
3
129
23
21
26
29
1.99
75107--75171
21
3.1
21
80
8
78
1
41
16
40
1.58
80275--80365
23
4.0
23
86
0
119
20
27
25
26
1.99
86444--86595
63
2.4
62
84
4
189
32
23
21
23
1.98
87190--87244
23
2.4
23
90
0
83
18
21
27
32
1.96
93451--93551
41
2.5
40
83
4
123
32
14
14
37
1.88
94060--94120
31
2.0
31
93
3
106
37
34
6
21
1.79
94757--94794
20
1.9
20
94
0
67
39
13
23
23
1.90

Tables:   1

The End!