genome.fa.s3799.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003799.1 Hibiscus syriacus cultivar Beakdansim tig00008126_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68517

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1452--1477	13	2.0	13	100	0	52	38	15	23	23	1.92
3583--3617	17	2.1	17	100	0	70	22	11	28	37	1.89
3606--3673	11	5.9	11	74	16	66	27	22	25	25	1.99
3606--3670	23	2.8	22	90	6	94	27	23	24	24	2.00
3608--3719	24	4.7	24	83	3	129	27	23	23	25	2.00
5397--5434	20	1.9	20	94	0	67	31	34	15	18	1.92
5454--5542	45	2.0	46	88	2	135	26	24	19	29	1.98
13025--13068	21	2.1	21	86	0	61	9	40	15	34	1.79
14195--14232	20	1.9	20	94	0	67	31	34	15	18	1.92
14252--14340	46	2.0	46	84	2	117	26	23	19	30	1.98
16110--16169	14	4.3	14	70	16	52	68	0	6	25	1.14
18696--18743	25	1.9	25	87	8	71	68	2	4	25	1.18
20097--20192	38	2.5	38	83	3	122	40	3	25	31	1.71
20364--20552	95	2.0	94	84	1	243	31	5	30	32	1.80
20978--21089	31	4.1	28	67	21	92	42	3	5	48	1.43
21071--21100	13	2.3	13	100	0	60	33	0	6	60	1.23
21082--21148	30	2.3	30	89	2	100	44	2	4	47	1.38
21112--21354	11	22.6	11	67	15	82	41	3	6	47	1.47
21183--21264	20	4.0	20	78	6	92	40	4	6	48	1.49
21191--21279	20	4.2	20	76	8	88	38	3	6	51	1.45
21183--21299	31	3.6	33	77	9	100	40	4	5	49	1.47
21295--21332	20	1.9	20	88	0	58	42	5	2	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21400--21449	16	3.1	16	83	11	66	38	0	8	54	1.30
21403--21654	35	7.6	34	90	7	210	38	0	1	59	1.07
21439--21654	5	44.0	5	96	3	404	39	0	0	60	0.97
22705--22798	41	2.3	41	92	0	170	36	14	18	30	1.91
29400--29481	22	3.7	22	93	0	137	25	25	26	21	2.00
31456--31506	19	2.6	20	90	3	77	43	23	17	15	1.88
31456--31713	20	12.6	20	73	9	108	39	20	22	18	1.92
31563--31700	63	2.2	63	88	0	195	36	18	24	20	1.94
31816--31847	6	5.5	6	96	3	57	31	53	15	0	1.43
32535--32599	6	11.5	6	95	4	102	0	16	52	30	1.45
32677--32720	20	2.2	20	91	0	70	11	18	15	54	1.70
32709--32960	20	12.3	20	84	3	279	21	23	17	36	1.94
32707--32960	83	3.1	83	90	1	388	21	24	17	36	1.95
32974--33027	20	2.7	20	91	0	81	11	16	18	53	1.72
33014--33064	19	2.6	19	87	3	66	15	15	23	45	1.85
37315--37364	19	2.7	20	77	20	54	40	8	0	52	1.31
42294--42335	17	2.4	18	80	4	50	47	0	4	47	1.23
44746--44797	17	3.2	17	75	10	54	32	3	13	50	1.60
45266--45387	60	2.0	60	100	0	244	36	13	9	40	1.78
45705--45741	17	2.2	17	90	0	56	29	8	21	40	1.82
46638--46673	18	2.0	18	88	0	54	30	2	5	61	1.33
51521--51619	33	3.1	33	84	5	123	36	21	14	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56260--56359	33	3.1	33	85	5	125	36	22	14	28	1.92
62184--62222	2	19.5	2	100	0	78	48	0	0	51	1.00
62335--62366	14	2.2	15	94	5	57	12	3	0	84	0.74
62420--62449	15	2.0	15	93	0	51	70	0	0	30	0.88
62474--62534	23	2.7	23	79	7	70	68	0	0	31	0.89
63378--63429	9	6.1	9	76	13	56	34	1	0	63	1.06
63378--63426	17	2.9	17	87	6	73	36	2	0	61	1.08
63378--63427	16	3.1	16	91	2	73	36	2	0	62	1.07
65443--65477	18	1.9	18	88	0	52	25	34	31	8	1.86
65718--65799	34	2.4	34	75	18	80	26	7	10	54	1.61

Tables:   1

The End!