genome.fa.s3800.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003800.1 Hibiscus syriacus cultivar Beakdansim tig00008128_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147164

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3993--4194	41	4.9	41	80	5	221	35	17	15	31	1.91
3993--4194	83	2.5	81	76	8	228	35	17	15	31	1.91
5445--5544	43	2.3	43	87	0	155	29	21	20	30	1.98
13433--13485	21	2.5	21	87	0	70	39	18	39	1	1.62
13861--13958	45	2.2	44	90	3	151	31	22	15	30	1.95
18063--18129	20	3.2	20	64	15	55	38	10	29	20	1.86
18045--18129	42	2.0	42	100	0	170	32	11	29	25	1.91
19407--19630	2	112.0	2	67	19	112	44	4	4	47	1.40
19448--19596	42	3.6	42	80	10	130	43	4	3	48	1.40
19416--19630	114	1.9	115	83	8	287	43	4	4	47	1.41
19844--19914	2	37.0	2	71	23	55	52	2	2	42	1.31
19844--19914	18	4.2	17	78	20	78	52	2	2	42	1.31
20191--20238	22	2.2	22	88	7	71	54	4	10	31	1.53
20184--20424	29	8.1	31	69	23	94	52	3	7	36	1.47
20184--20238	14	3.7	15	75	20	53	54	5	9	30	1.54
20219--20264	9	5.3	9	79	10	60	54	2	8	34	1.43
20219--20272	17	3.3	17	80	14	69	53	1	9	35	1.44
20244--20495	2	126.5	2	64	22	68	50	3	5	40	1.43
20555--20744	11	18.5	11	65	16	70	46	3	3	47	1.34
20520--20753	20	11.1	20	68	20	95	45	3	4	46	1.41
20645--20744	17	5.8	17	68	24	59	47	2	3	48	1.28
20683--20800	29	4.5	26	72	21	86	49	1	4	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20704--20800	20	5.0	19	68	18	58	50	2	4	43	1.33
20663--20792	49	2.6	49	86	3	163	48	2	4	44	1.36
20553--20800	124	2.0	123	80	12	283	46	3	4	45	1.37
21779--22005	114	2.0	114	98	0	436	18	19	26	34	1.95
28885--28952	3	22.0	3	82	5	82	38	0	1	60	1.06
30580--30813	111	2.1	111	82	3	276	38	9	10	41	1.72
33508--33590	43	1.9	44	85	2	114	27	10	21	39	1.87
33665--33705	6	6.0	7	81	16	50	14	14	9	60	1.57
36337--36400	17	3.6	17	72	21	51	73	4	17	4	1.18
38549--38882	114	2.9	114	94	0	569	32	14	20	32	1.93
40921--41071	50	2.9	52	85	5	182	36	13	22	27	1.92
42124--42850	76	9.6	76	95	0	1255	23	18	22	35	1.96
42124--42850	229	3.2	228	95	0	1264	23	18	22	35	1.96
42786--42885	45	2.2	45	94	0	173	23	21	20	36	1.96
43012--43079	3	22.0	3	82	5	82	38	0	1	60	1.06
44719--44952	111	2.1	111	83	3	285	38	9	10	41	1.73
47375--47410	7	5.1	7	89	0	54	41	0	2	55	1.14
50238--50277	16	2.5	16	83	0	53	65	0	5	30	1.14
50415--50465	20	2.5	21	84	9	70	35	11	23	29	1.90
50548--50583	19	1.9	19	94	5	65	47	8	22	22	1.77
50568--50667	20	4.9	20	84	3	112	27	18	19	36	1.94
52592--52631	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55874--55916	19	2.3	18	88	11	61	39	2	0	58	1.11
62928--62963	17	2.1	17	100	0	72	44	16	16	22	1.86
68771--68848	37	2.2	37	88	9	117	42	19	21	16	1.89
70501--70548	17	2.9	16	71	17	53	50	0	2	47	1.12
70502--70548	15	2.8	18	71	18	55	51	0	2	46	1.13
74593--74628	18	1.9	18	88	5	54	50	2	0	47	1.15
83390--83513	63	2.0	63	81	0	149	38	13	20	27	1.90
84093--84127	18	1.9	18	100	0	70	17	22	34	25	1.96
91602--91631	2	15.0	2	100	0	60	50	0	0	50	1.00
92070--92124	25	2.2	25	90	3	83	36	3	16	43	1.65
94546--94635	41	2.2	42	93	2	155	22	11	16	50	1.77
94827--94883	21	2.6	23	78	10	57	43	1	0	54	1.10
94844--94890	22	2.1	23	84	11	62	42	2	0	55	1.12
100184--100291	14	7.1	15	78	15	114	33	19	5	41	1.75
100184--100291	29	3.6	29	80	14	119	33	19	5	41	1.75
101679--101723	17	2.8	16	80	6	54	6	15	28	48	1.70
101851--101883	13	2.5	13	100	0	66	54	0	0	45	0.99
102262--102336	10	7.7	10	67	21	52	56	21	13	9	1.65
102266--102330	16	4.1	16	91	0	112	55	23	13	7	1.64
103408--103449	14	3.0	14	92	0	66	54	21	14	9	1.68
103657--104381	6	121.5	6	95	3	1223	33	1	16	48	1.56
104036--104074	4	10.8	4	79	20	50	28	0	20	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104534--104583	18	2.6	20	75	12	59	34	0	4	62	1.14
108608--109055	228	2.0	227	95	1	799	45	8	7	39	1.62
109105--109154	19	2.6	20	78	9	59	54	14	14	18	1.72
109282--109328	20	2.4	19	82	10	67	53	10	17	19	1.72
109291--109333	20	2.3	19	88	11	63	51	11	16	20	1.75
111529--111593	21	3.1	21	80	6	69	40	15	29	15	1.88
113428--113469	18	2.4	19	84	15	63	30	2	9	57	1.44
113432--113465	17	1.9	18	94	5	61	32	2	11	52	1.53
113591--116114	393	6.4	395	90	6	4073	36	15	16	31	1.90
113591--116114	980	2.6	991	92	5	4106	36	15	16	31	1.90
117572--117633	18	3.4	18	79	0	79	37	9	35	17	1.83
117572--117663	6	15.3	6	79	0	67	36	7	34	20	1.81
117587--117667	3	27.0	3	75	0	72	35	6	34	23	1.80
117575--117651	36	2.1	36	90	0	118	35	9	35	20	1.85
117575--117663	12	7.4	12	84	0	88	35	7	34	21	1.82
117572--117663	18	5.1	18	77	0	76	36	7	34	20	1.81
119092--119608	183	2.8	183	97	0	946	35	14	16	33	1.88
122072--122136	25	2.6	25	80	0	85	35	9	13	41	1.77
122481--122544	23	2.8	23	87	0	92	35	6	20	37	1.78
122481--122553	23	3.2	23	82	7	85	34	5	20	39	1.76
122822--122872	25	2.0	25	92	0	84	33	7	19	39	1.81
123262--123298	18	2.1	18	89	0	56	32	5	10	51	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123254--123300	24	2.0	24	86	0	67	34	4	14	46	1.64
123558--123644	39	2.2	39	95	0	156	48	20	13	17	1.81
128108--128132	3	8.3	3	100	0	50	0	0	32	68	0.90
128387--128459	23	3.2	23	88	0	101	34	4	21	39	1.73
128501--129164	335	2.0	329	96	1	1229	42	7	11	38	1.69
134137--134220	40	2.1	40	97	0	159	41	11	13	33	1.80
136235--136285	3	17.0	3	100	0	102	66	0	0	33	0.92
137188--137238	20	2.6	21	81	12	63	27	19	1	50	1.58

Tables:   1

The End!