genome.fa.s3801.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003801.1 Hibiscus syriacus cultivar Beakdansim tig00008129_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67622

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7220--7244	12	2.1	12	100	0	50	40	24	16	20	1.91
9753--9800	20	2.5	20	86	3	62	41	25	0	33	1.55
10920--11668	370	2.0	371	97	0	1428	42	10	14	32	1.79
11729--11765	16	2.4	16	90	4	58	67	0	21	10	1.21
12500--12550	26	2.0	26	84	0	66	29	11	3	54	1.54
12554--12650	41	2.3	41	79	8	99	28	3	3	64	1.23
15021--15047	13	2.1	13	100	0	54	22	0	0	77	0.76
17387--17413	13	2.1	13	100	0	54	22	0	0	77	0.76
19060--19128	36	1.9	36	90	0	111	43	18	8	28	1.80
19843--19895	6	8.5	6	83	8	70	15	16	11	56	1.67
23160--23192	7	4.6	7	92	7	57	75	0	24	0	0.80
23150--23193	8	5.8	8	86	5	56	72	0	27	0	0.85
23150--23192	15	2.9	15	86	10	61	72	0	27	0	0.85
26398--26542	75	1.9	75	84	0	191	31	15	21	31	1.95
27667--27798	24	5.5	24	85	3	167	41	18	13	25	1.88
27664--27815	48	3.2	48	78	8	157	44	18	13	24	1.85
27681--27815	72	1.9	72	83	9	177	42	19	14	23	1.88
31958--32041	22	3.8	22	88	3	98	36	14	13	35	1.85
32746--32867	36	3.4	34	69	15	93	27	18	13	39	1.89
32740--32882	73	2.0	73	89	8	220	30	17	13	39	1.88
32781--32885	36	2.9	35	71	18	90	30	18	15	36	1.91
32740--32898	73	2.2	73	85	8	200	31	18	11	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32898--33347	224	2.0	225	87	3	647	36	14	22	26	1.92
33269--33609	139	2.5	138	83	6	399	40	14	19	25	1.89
33826--33904	3	26.3	3	81	14	92	31	1	1	65	1.08
33822--33902	24	3.2	25	84	10	103	30	1	1	66	1.07
35598--35655	2	29.5	2	96	3	109	51	0	0	48	1.00
38226--38271	20	2.3	20	88	3	67	39	23	0	36	1.55
39833--39869	16	2.4	16	90	4	58	62	0	24	13	1.31
43499--43546	20	2.5	20	86	3	62	37	25	0	37	1.56
45108--45144	16	2.4	16	90	4	58	62	0	24	13	1.31
46820--46867	20	2.5	20	86	3	62	37	25	0	37	1.56
48388--48424	16	2.4	16	90	4	58	62	0	24	13	1.31
50627--50682	21	2.7	21	100	0	112	44	25	16	14	1.84
50670--50762	20	4.7	20	95	0	168	25	29	20	24	1.99
50916--50949	12	2.9	12	86	4	52	17	41	5	35	1.74
51098--51155	20	2.9	20	94	0	98	39	24	20	15	1.91
51183--51247	19	3.4	19	100	0	130	15	20	16	47	1.82
51388--51424	14	2.6	14	86	0	56	48	21	0	29	1.50
53427--53561	20	6.7	20	80	9	130	25	18	25	31	1.98
53448--53565	62	1.9	62	85	3	166	23	17	23	34	1.96
53680--53725	19	2.3	20	81	7	58	26	17	28	28	1.98
55593--55640	20	2.5	20	89	3	71	39	25	0	35	1.56
57175--57211	16	2.4	16	90	4	58	62	0	24	13	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58837--58948	49	2.3	49	98	0	215	38	21	12	27	1.89
60970--61016	20	2.4	20	86	10	62	44	19	0	36	1.51
62580--62616	16	2.4	16	90	4	58	62	0	24	13	1.31
64233--64343	49	2.3	49	96	1	206	38	21	12	27	1.89
66363--66409	20	2.4	20	86	10	62	44	19	0	36	1.51

Tables:   1

The End!