genome.fa.s3803.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003803.1 Hibiscus syriacus cultivar Beakdansim tig00008141_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110388

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1036--1063	2	14.0	2	100	0	56	50	0	0	50	1.00
1170--1212	18	2.5	18	81	7	54	44	13	18	23	1.86
1352--1382	15	2.1	15	93	0	53	54	0	0	45	0.99
2402--2462	30	2.1	29	84	3	77	18	4	16	60	1.52
6634--6686	21	2.5	21	84	0	70	22	24	16	35	1.95
6679--6748	20	3.5	20	98	0	131	40	21	20	18	1.92
6941--7002	22	2.8	22	85	0	88	27	38	12	20	1.90
7323--7395	33	2.2	33	85	7	94	13	20	26	39	1.90
7368--7435	20	3.4	20	83	0	73	16	14	26	42	1.86
7406--7445	20	2.0	20	90	0	62	15	12	25	47	1.80
9239--9433	20	10.5	20	78	15	197	40	22	19	17	1.91
9239--9471	40	6.4	38	74	19	171	41	21	20	17	1.91
9478--9523	20	2.3	20	84	0	65	19	21	23	34	1.96
10004--10095	21	4.4	20	68	11	60	20	36	17	25	1.94
11525--11578	14	3.5	14	73	22	54	44	20	24	11	1.83
11505--11600	33	2.8	33	92	3	147	42	20	23	12	1.86
11648--11700	17	3.2	17	70	24	58	9	20	18	50	1.74
11615--11709	33	2.8	33	88	1	145	12	21	18	47	1.82
11702--11769	20	3.4	20	85	4	93	22	19	22	36	1.95
13711--13755	22	2.0	22	83	8	56	24	20	11	44	1.83
13969--13995	14	1.9	14	100	0	54	7	11	29	51	1.64
14893--14933	22	1.9	21	85	5	55	26	12	39	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15081--15147	20	3.3	20	95	0	116	22	19	26	31	1.98
15134--15246	20	5.7	20	90	0	172	22	19	18	39	1.92
15121--15246	40	3.2	39	80	10	139	22	19	19	38	1.93
16343--16385	18	2.4	18	92	3	70	25	4	51	18	1.66
21503--21528	11	2.4	11	100	0	52	15	26	11	46	1.80
27523--27627	19	5.2	19	79	13	102	35	4	27	32	1.78
27865--27891	6	4.5	6	100	0	54	0	14	51	33	1.43
28012--28146	46	3.0	45	85	10	188	22	16	24	37	1.94
28009--28151	41	3.4	41	86	9	196	22	16	23	37	1.93
28061--28151	20	4.4	21	70	9	71	20	15	24	39	1.91
28262--28305	21	2.1	21	91	0	70	27	25	22	25	2.00
28266--28312	21	2.2	21	84	0	58	29	25	21	23	1.99
28327--28460	46	3.0	46	87	9	206	22	17	23	37	1.94
28399--28463	20	3.2	20	66	12	60	23	16	26	33	1.96
28329--28465	41	3.2	41	91	5	202	21	16	23	38	1.92
28378--28443	21	3.2	21	66	12	55	22	15	21	40	1.90
28013--28784	314	2.5	314	97	0	1431	26	18	21	33	1.97
28576--28634	21	2.9	21	85	5	86	30	22	23	23	1.99
28573--28642	21	3.5	19	77	11	59	35	21	21	21	1.96
28640--28774	46	3.0	46	85	9	199	22	16	24	37	1.94
28686--28748	21	3.0	21	66	13	58	22	14	23	39	1.91
28636--28816	41	4.3	41	81	11	206	24	16	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28704--28816	20	5.6	20	67	10	68	25	16	23	33	1.96
28831--28876	19	2.4	19	85	3	56	21	17	30	30	1.96
28842--28878	19	1.9	19	94	0	65	21	16	29	32	1.95
29022--29134	60	1.9	60	83	0	145	38	15	7	38	1.75
31005--31059	3	18.3	3	100	0	110	0	32	0	67	0.91
31583--31622	21	2.0	19	90	9	62	35	17	20	27	1.95
32091--32481	54	7.3	54	86	1	435	33	14	17	35	1.90
32091--32441	161	2.2	162	85	1	470	33	13	17	36	1.88
37971--38446	54	8.9	54	82	2	465	33	14	17	34	1.90
37971--38337	160	2.3	161	85	1	459	32	13	16	37	1.88
37979--38392	214	1.9	214	83	1	526	33	14	16	35	1.88
42331--42370	20	1.9	20	85	10	53	32	2	17	47	1.61
63756--63832	34	2.3	34	84	4	102	44	5	10	40	1.61
69148--69180	15	2.2	15	94	0	57	15	69	9	6	1.34
69298--69324	12	2.2	12	100	0	54	25	7	7	59	1.51
74277--74392	35	3.1	35	71	21	101	25	18	18	38	1.92
74187--74495	77	4.0	77	82	5	345	25	20	16	37	1.93
74190--74495	154	2.0	156	85	3	420	25	20	16	37	1.93
75260--75328	18	3.7	18	75	7	75	30	33	18	17	1.94
75255--75331	38	2.0	38	90	5	120	28	29	19	22	1.98
75899--76038	64	2.2	64	83	5	167	27	17	20	35	1.95
81291--81325	6	5.8	6	96	0	61	11	51	0	37	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85357--85432	19	4.0	19	91	0	116	26	27	14	31	1.95
91411--91479	18	3.7	18	77	11	68	31	28	18	20	1.96
91720--91795	2	38.0	2	100	0	152	0	0	50	50	1.00
92166--92216	19	2.7	19	93	0	93	23	31	15	29	1.95
95557--95588	16	2.0	17	88	11	50	46	6	12	34	1.67
97594--97678	31	2.7	31	76	7	91	18	25	25	29	1.98
99151--99213	30	2.1	30	93	0	108	22	12	25	39	1.89
103928--103962	12	2.8	13	86	8	54	20	48	20	11	1.79
105029--105081	25	2.1	25	89	0	79	28	7	16	47	1.74
106865--106943	32	2.4	33	85	2	97	16	15	26	41	1.88
106865--106955	33	2.8	33	84	1	112	16	14	28	40	1.87
107374--107415	14	3.1	14	86	3	50	33	16	0	50	1.46
109334--109398	2	33.5	2	90	6	107	47	0	1	50	1.10

Tables:   1

The End!