Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003805.1 Hibiscus syriacus cultivar Beakdansim tig00008145_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2300233
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 10 of 11
Found at i:2078094 original size:99 final size:98
Alignment explanation
Indices: 2077962--2078622 Score: 578
Period size: 100 Copynumber: 6.6 Consensus size: 98
2077952 ATCTGTTTGT
*** * * *
2077962 GTTATAAGTATGAAACTGCTTAT-TTGATACAAAAGTAAGAGAAAACATGTTTCTCATGATAACG
1 GTTATAAGTATGAAACCATTTATATT-ATGCAAAAGTAAGACAAAACATGTTTCTCATGATAACA
* *
2078026 TAGTAGATAGCACATTTTTTATGTCAATCATTTAT
65 TAGTAGGTAGCACATTTTTTATGTCAA-CATTTAA
* * * *
2078061 GTTATAAGTAGGAAACCATTTACATTATGCAAAAATAAGACAAAATA-GTTT-TACCATGATAAC
1 GTTATAAGTATGAAACCATTTATATTATGCAAAAGTAAGACAAAACATGTTTCT--CATGATAAC
* * * *
2078124 AAAGTAGGTAGCGCATTTTTTCTGTCAACAGTTCAA
64 ATAGTAGGTAGCACATTTTTTATGTCAACA-TTTAA
* ** * * * *
2078160 GTTATATGTATGAAACTGTTTATATTATACAAAAGTAAGACAAAATAAGTTTCTCATGATAACGT
1 GTTATAAGTATGAAACCATTTATATTATGCAAAAGTAAGACAAAACATGTTTCTCATGATAACAT
* * * * *
2078225 ATTAGGTAGCGCATTTTTTAATGTCAGTCGTTAAA
66 AGTAGGTAGCACATTTTTT-ATGTCA-ACATTTAA
** * * *
2078260 GTTATAAGTATGAAACTGTTTATATGATGCAAAAGTAAGAGAAAACGA-GTTTCTCATGACAACA
1 GTTATAAGTATGAAACCATTTATATTATGCAAAAGTAAGACAAAAC-ATGTTTCTCATGATAACA
* *** * *
2078324 TAGTAGGCAATGTCTTTTTTTTTATGTTAACCGTTTAA
65 TAGTAGG-TA-G-CACATTTTTTATGTCAA-CATTTAA
* * *
2078362 GTTA-ATAGTATGAATCCATTTATATTATGCAAAATTAAGACAAAACATGTTTTTCATGATAACA
1 GTTATA-AGTATGAAACCATTTATATTATGCAAAAGTAAGACAAAACATGTTTCTCATGATAACA
*
2078426 TAGTAGGTAACACCATTTTTTATGTCAACAGTTTAA
65 TAGTAGGTAGCA-CATTTTTTATGTCAACA-TTTAA
* * * * * * *
2078462 GATATAAGTTTGAAACCGTTTATATTATGCAAAAGTAAGAAAAAATAGGTTGT-TCATGATAACG
1 GTTATAAGTATGAAACCATTTATATTATGCAAAAGTAAGACAAAACATGTT-TCTCATGATAACA
* * * *
2078526 TATTAGGTAGTACCTTTTTTTAATGTCAACCGTTTAA
65 TAGTAGGTAGCA-CATTTTTT-ATGTCAA-CATTTAA
* * * * *
2078563 GTTATAAATATGAAGCCATTTATATGATGCAAAAGTAAGAGAAAACATGTTTATCATGAT
1 GTTATAAGTATGAAACCATTTATATTATGCAAAAGTAAGACAAAACATGTTTCTCATGAT
2078623 CCGTATGTAT
Statistics
Matches: 457, Mismatches: 83, Indels: 42
0.79 0.14 0.07
Matches are distributed among these distances:
97 1 0.00
98 6 0.01
99 139 0.30
100 162 0.35
101 70 0.15
102 72 0.16
103 7 0.02
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (98 bp):
GTTATAAGTATGAAACCATTTATATTATGCAAAAGTAAGACAAAACATGTTTCTCATGATAACAT
AGTAGGTAGCACATTTTTTATGTCAACATTTAA
Found at i:2078406 original size:202 final size:194
Alignment explanation
Indices: 2077991--2078622 Score: 665
Period size: 202 Copynumber: 3.2 Consensus size: 194
2077981 TTATTTGATA
* * *
2077991 CAAAAGTAAGAGAAAACATGTTTCTCATGATAACGTAGTAGATAGCACATTTTTTATGTCAATCA
1 CAAAAGTAAGACAAAACATGTTTCTCATGATAACGTAGTAGGTAGCACATTTTTTATGTC-ATCG
* * * * *
2078056 TTTATGTTATAAGTAGGAAACCATTTACATTATGCAAAAATAAGACAAAATAGTTTTACCATGAT
65 TTTAAGTTATAAGTATGAAACCGTTTATATTATGCAAAAGTAAGA-AAAATAGTTTT--CATGAT
* * * * * **
2078121 AACAAAGTAGGTAG-CGC-ATTTTTTCTGTCAACAGTTCAAGTTATATGTATGAAACTGTTTATA
127 AACATAGTAGGTAGTC-CTTTTTTTTATGTCAACCGTTTAAGTTATA-GTATGAAACCATTTATA
*
2078184 TTATA
190 TTATG
* * * *
2078189 CAAAAGTAAGACAAAATAAGTTTCTCATGATAACGTATTAGGTAGCGCATTTTTTAATGTCAGTC
1 CAAAAGTAAGACAAAACATGTTTCTCATGATAACGTAGTAGGTAGCACATTTTTT-ATGTCA-TC
* * * *
2078254 GTTAAAGTTATAAGTATGAAACTGTTTATATGATGCAAAAGTAAGAGAAAACGAGTTTCTCATGA
64 GTTTAAGTTATAAGTATGAAACCGTTTATATTATGCAAAAGTAAGA-AAAA-TAGTTT-TCATGA
* * * * *
2078319 CAACATAGTAGGCAATGTCTTTTTTTTTATGTTAACCGTTTAAGTTAATAGTATGAATCCATTTA
126 TAACATAGTAGG-TA-GTCCTTTTTTTTATGTCAACCGTTTAAGTT-ATAGTATGAAACCATTTA
2078384 TATTATG
188 TATTATG
* * * * *
2078391 CAAAATTAAGACAAAACATGTTTTTCATGATAACATAGTAGGTAACACCATTTTTTATGTCAACA
1 CAAAAGTAAGACAAAACATGTTTCTCATGATAACGTAGTAGGTAGCA-CATTTTTTATGTCATC-
* *
2078456 GTTTAAGATATAAGTTTGAAACCGTTTATATTATGCAAAAGTAAGAAAAAATAGGTTGTTCATGA
64 GTTTAAGTTATAAGTATGAAACCGTTTATATTATGCAAAAGTAAG-AAAAATA-GTT-TTCATGA
* * * * *
2078521 TAACGTATTAGGTAGTACCTTTTTTTAATGTCAACCGTTTAAGTTATAAATATGAAGCCATTTAT
126 TAACATAGTAGGTAGT-CCTTTTTTTTATGTCAACCGTTTAAGTTAT-AGTATGAAACCATTTAT
*
2078586 ATGATG
189 ATTATG
* *
2078592 CAAAAGTAAGAGAAAACATGTTTATCATGAT
1 CAAAAGTAAGACAAAACATGTTTCTCATGAT
2078623 CCGTATGTAT
Statistics
Matches: 360, Mismatches: 58, Indels: 29
0.81 0.13 0.06
Matches are distributed among these distances:
198 50 0.14
199 63 0.17
200 10 0.03
201 78 0.22
202 146 0.41
203 13 0.04
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (194 bp):
CAAAAGTAAGACAAAACATGTTTCTCATGATAACGTAGTAGGTAGCACATTTTTTATGTCATCGT
TTAAGTTATAAGTATGAAACCGTTTATATTATGCAAAAGTAAGAAAAATAGTTTTCATGATAACA
TAGTAGGTAGTCCTTTTTTTTATGTCAACCGTTTAAGTTATAGTATGAAACCATTTATATTATG
Found at i:2080234 original size:2 final size:2
Alignment explanation
Indices: 2080229--2080273 Score: 63
Period size: 2 Copynumber: 22.0 Consensus size: 2
2080219 TGTGTATTTA
* *
2080229 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT AT TT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT
2080272 AT
1 AT
2080274 GTGAGTAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (2 bp):
AT
Found at i:2080284 original size:19 final size:19
Alignment explanation
Indices: 2080230--2080273 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
2080220 GTGTATTTAA
* *
2080230 TATATATAT-ATATATATA
1 TATATATATGATATATTTG
2080248 TATATATATGATATATTTG
1 TATATATATGATATATTTG
2080267 TATATAT
1 TATATAT
2080274 GTGAGTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (19 bp):
TATATATATGATATATTTG
Found at i:2082359 original size:54 final size:54
Alignment explanation
Indices: 2082270--2082621 Score: 488
Period size: 54 Copynumber: 6.5 Consensus size: 54
2082260 TATGTATTGC
2082270 ATTTACCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATGA
1 ATTT-CCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATGA
* *
2082325 ATTTCGGTATTGGTACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATGA
1 ATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATGA
* * *
2082379 ATTTTCGTATTGACACTATGTGTGCAACCTAATAAATTCATAATAAGTTTATGA
1 ATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATGA
*
2082433 ATTTCCGTATTAGCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATGA
1 ATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATGA
* * * *
2082487 ATTTCCATATTAGCACTATGTGTACAACCTAAGAAATTCATAATTAGTTTATGA
1 ATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATGA
* * * * * * * *
2082541 ATTTCCATATTGGCACTATGTGTGCACCCCACGTAATCCATAATGAGTTTGTGA
1 ATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATGA
* * ***
2082595 ATTACCATATCAACACTATGTGTGCAA
1 ATTTCCGTATTGGCACTATGTGTGCAA
2082622 AAACCACTAA
Statistics
Matches: 269, Mismatches: 28, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
54 265 0.99
55 4 0.01
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.36
Consensus pattern (54 bp):
ATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATGA
Found at i:2106473 original size:54 final size:54
Alignment explanation
Indices: 2106006--2106434 Score: 623
Period size: 54 Copynumber: 7.9 Consensus size: 54
2105996 ACCAAATAGG
*
2106006 CACTAAGTGTGCAATTCAC-GAAATTCATCATATGTTGATGAACATCCGTTTCTG-
1 CACTAAGTGTGCAATTCACAG-AATTCATCATATGTTGATGAACAACCGTTTC-GA
* * * *
2106060 CACTAAGTGTACAATTCAC-GAAATTCATCATATTTTGATGAACAACCGTTTTGG
1 CACTAAGTGTGCAATTCACAG-AATTCATCATATGTTGATGAACAACCGTTTCGA
* *
2106114 CACTGAGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCGTTTCGA
1 CACTAAGTGTGCAATTCACAGAATTCATCATATGTTGATGAACAACCGTTTCGA
* *
2106168 CACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCGTTTCAA
1 CACTAAGTGTGCAATTCACAGAATTCATCATATGTTGATGAACAACCGTTTCGA
* * *
2106222 CACTAGGTGTGCAATTCACATG-ATTCATCATATGTTGATGAAAAACAGTTTCGA
1 CACTAAGTGTGCAATTCACA-GAATTCATCATATGTTGATGAACAACCGTTTCGA
* *
2106276 CACTAAGTGTTCAATTCACAGAATTCATCATATGTTGATGAACAACCATTTCGA
1 CACTAAGTGTGCAATTCACAGAATTCATCATATGTTGATGAACAACCGTTTCGA
* *
2106330 CACTAAGTGTGCAATTCACAGAATTCATCATATGTTGATGAACAACCATTTCGG
1 CACTAAGTGTGCAATTCACAGAATTCATCATATGTTGATGAACAACCGTTTCGA
* * *
2106384 TACTAAGTGTGCAATTAACGGAATTCATCATATGTTGATGAACAACCGTTT
1 CACTAAGTGTGCAATTCACAGAATTCATCATATGTTGATGAACAACCGTTT
2106435 AGGCACTATG
Statistics
Matches: 344, Mismatches: 27, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
53 2 0.01
54 340 0.99
55 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (54 bp):
CACTAAGTGTGCAATTCACAGAATTCATCATATGTTGATGAACAACCGTTTCGA
Found at i:2108108 original size:18 final size:18
Alignment explanation
Indices: 2108085--2108128 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
2108075 ATTCGGGGAT
2108085 AGATCAGTTCAAACTGAG
1 AGATCAGTTCAAACTGAG
*
2108103 AGATCATTTCAAACTGAG
1 AGATCAGTTCAAACTGAG
2108121 AGATCAGT
1 AGATCAGT
2108129 GGTAGCACCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (18 bp):
AGATCAGTTCAAACTGAG
Found at i:2108824 original size:19 final size:19
Alignment explanation
Indices: 2108789--2108837 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
2108779 TATGCAAGCA
*
2108789 GTATCGATATCGAAAGG-GG
1 GTATCGATA-CGAAAGGAAG
*
2108808 GTATCGATACTATAAGGAAG
1 GTATCGATACGA-AAGGAAG
2108828 GTATCGATAC
1 GTATCGATAC
2108838 CATTGATAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 2 0.08
19 13 0.50
20 11 0.42
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (19 bp):
GTATCGATACGAAAGGAAG
Found at i:2108886 original size:19 final size:22
Alignment explanation
Indices: 2108862--2108913 Score: 74
Period size: 19 Copynumber: 2.5 Consensus size: 22
2108852 TGCAAAAATG
2108862 GTATCGATACCA-TA-ATAG-A
1 GTATCGATACCATTACATAGTA
*
2108881 GTATCGATACTATTACATAGTA
1 GTATCGATACCATTACATAGTA
2108903 GTATCGATACC
1 GTATCGATACC
2108914 GTGGTATGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 11 0.39
20 2 0.07
21 4 0.14
22 11 0.39
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (22 bp):
GTATCGATACCATTACATAGTA
Found at i:2109338 original size:54 final size:53
Alignment explanation
Indices: 2109256--2109671 Score: 508
Period size: 54 Copynumber: 7.7 Consensus size: 53
2109246 TTACCAAATA
* * * * *
2109256 GGCACTAAGTGTACAATTCATGGAATTCACCATATGTTAATGAACAACTGTTTC
1 GGCACTAAGTGTGCAATTCA-CGAATTCATCATATGTTGATGAACAACCGTTTC
* *
2109310 GGCACTAAGTGTGCAATTCACGATATTCATAATTTGTTGATGAACAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGA-ATTCATCATATGTTGATGAACAACCGTTTC
* * * * *
2109364 AGCACTAAGTGTGCAATTCACGGTATTCATAATTTGTTGATGAACAATCGTTTC
1 GGCACTAAGTGTGCAATTCAC-GAATTCATCATATGTTGATGAACAACCGTTTC
* *
2109418 GACACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCATTTC
1 GGCACTAAGTGTGCAATTCAC-GAATTCATCATATGTTGATGAACAACCGTTTC
* *
2109472 GACACTAAGTGTGCAATTTACGAAATTCATCATATGTTGATGAACAACCGTTTC
1 GGCACTAAGTGTGCAATTCACG-AATTCATCATATGTTGATGAACAACCGTTTC
* * *
2109526 GACACTAAGTGTGCAATTCATGGAATTCAACATATGTTGATGAACAACCGTTTC
1 GGCACTAAGTGTGCAATTCA-CGAATTCATCATATGTTGATGAACAACCGTTTC
* * * * *
2109580 TGCACTAAGTGTGCAATTCAAGGAATTCATCATATGTTGATGAACTACCATTTA
1 GGCACTAAGTGTGCAATTC-ACGAATTCATCATATGTTGATGAACAACCGTTTC
* ** *
2109634 GGCACTATGTGTGCAACCCACGAAATTCATAATATGTT
1 GGCACTAAGTGTGCAATTCACG-AATTCATCATATGTT
2109672 TCTAAATTAC
Statistics
Matches: 322, Mismatches: 34, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
53 5 0.02
54 314 0.98
55 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (53 bp):
GGCACTAAGTGTGCAATTCACGAATTCATCATATGTTGATGAACAACCGTTTC
Found at i:2109525 original size:162 final size:162
Alignment explanation
Indices: 2109257--2109671 Score: 593
Period size: 162 Copynumber: 2.6 Consensus size: 162
2109247 TACCAAATAG
* * * * **
2109257 GCACTAAGTGTACAATTCATGGAATTCACCATATGTTAATGAACAACTGTTTCGGCACTAAGTGT
1 GCACTAAGTGTGCAATTCAAGGAATTCATCATATGTTGATGAACAACCATTTCGGCACTAAGTGT
* *
2109322 GCAATTCACGATATTCATAATTTGTTGATGAACAACCGTTTC-AGCACTAAGTGTGCAATTCACG
66 GCAATTCACGAAATTCATAATATGTTGATGAACAACCGTTTCGA-CACTAAGTGTGCAATTCACG
* * *
2109386 GTATTCATA-ATTTGTTGATGAACAATCGTTTC-
130 GAATTCA-ACATATGTTGATGAACAACCGTTTCT
* *
2109418 GACACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCATTTCGACACTAAGTG
1 G-CACTAAGTGTGCAATTCAAGGAATTCATCATATGTTGATGAACAACCATTTCGGCACTAAGTG
* * *
2109483 TGCAATTTACGAAATTCATCATATGTTGATGAACAACCGTTTCGACACTAAGTGTGCAATTCATG
65 TGCAATTCACGAAATTCATAATATGTTGATGAACAACCGTTTCGACACTAAGTGTGCAATTCACG
2109548 GAATTCAACATATGTTGATGAACAACCGTTTCT
130 GAATTCAACATATGTTGATGAACAACCGTTTCT
* * *
2109581 GCACTAAGTGTGCAATTCAAGGAATTCATCATATGTTGATGAACTACCATTTAGGCACTATGTGT
1 GCACTAAGTGTGCAATTCAAGGAATTCATCATATGTTGATGAACAACCATTTCGGCACTAAGTGT
**
2109646 GCAACCCACGAAATTCATAATATGTT
66 GCAATTCACGAAATTCATAATATGTT
2109672 TCTAAATTAC
Statistics
Matches: 226, Mismatches: 24, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
161 2 0.01
162 222 0.98
163 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (162 bp):
GCACTAAGTGTGCAATTCAAGGAATTCATCATATGTTGATGAACAACCATTTCGGCACTAAGTGT
GCAATTCACGAAATTCATAATATGTTGATGAACAACCGTTTCGACACTAAGTGTGCAATTCACGG
AATTCAACATATGTTGATGAACAACCGTTTCT
Found at i:2113935 original size:5 final size:5
Alignment explanation
Indices: 2113920--2114005 Score: 71
Period size: 5 Copynumber: 18.2 Consensus size: 5
2113910 ATATTTATCT
**
2113920 TTTTA -TTTA TTTTA TTTTA -TTTA GCTT- TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
2113967 -TTTA TTTGT- TTTTA TATTT- TTATT- TTTTA TTTT- TTTTA T
1 TTTTA TTT-TA TTTTA T-TTTA TT-TTA TTTTA TTTTA TTTTA T
2114006 CTCTATTTAT
Statistics
Matches: 68, Mismatches: 3, Indels: 20
0.75 0.03 0.22
Matches are distributed among these distances:
4 22 0.32
5 42 0.62
6 4 0.06
ACGTcount: A:0.17, C:0.01, G:0.02, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:2113993 original size:28 final size:27
Alignment explanation
Indices: 2113911--2114005 Score: 87
Period size: 26 Copynumber: 3.6 Consensus size: 27
2113901 TTTATTTCAA
*
2113911 TATTTATCTTTTTATT-TA-TTTTATTT
1 TATTTA-CTTTTTTTTATATTTTTATTT
*
2113937 TATTTAGCTTTTTTATTTTA-TTTTATTT
1 TATTTA-CTTTTTT-TTATATTTTTATTT
2113965 TATTTA-TTTGTTTTTATATTTTTA-TT
1 TATTTACTTT-TTTTTATATTTTTATTT
2113991 T-TTTA-TTTTTTTTAT
1 TATTTACTTTTTTTTAT
2114006 CTCTATTTAT
Statistics
Matches: 62, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
24 7 0.11
25 7 0.11
26 22 0.35
27 10 0.16
28 16 0.26
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.78
Consensus pattern (27 bp):
TATTTACTTTTTTTTATATTTTTATTT
Found at i:2118606 original size:20 final size:20
Alignment explanation
Indices: 2118581--2118635 Score: 110
Period size: 20 Copynumber: 2.8 Consensus size: 20
2118571 CACACATAAG
2118581 GAGTGCATCGATACACTGTA
1 GAGTGCATCGATACACTGTA
2118601 GAGTGCATCGATACACTGTA
1 GAGTGCATCGATACACTGTA
2118621 GAGTGCATCGATACA
1 GAGTGCATCGATACA
2118636 TACTTTTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (20 bp):
GAGTGCATCGATACACTGTA
Found at i:2119265 original size:23 final size:23
Alignment explanation
Indices: 2119235--2119363 Score: 150
Period size: 23 Copynumber: 5.6 Consensus size: 23
2119225 CATCTTATAT
* *
2119235 GGCACTACGGTGCAATTCTACGC
1 GGCACTTCGGTGCAATTCTACAC
* *
2119258 GGCACTACGGTGCAATTCTACGC
1 GGCACTTCGGTGCAATTCTACAC
* *
2119281 GGCACTTCGGTGCAATTTTACAT
1 GGCACTTCGGTGCAATTCTACAC
*
2119304 GGCACTTCGGTGCAATTCTACAT
1 GGCACTTCGGTGCAATTCTACAC
* * * *
2119327 GGCACTTCAGTGCAATTATATAT
1 GGCACTTCGGTGCAATTCTACAC
*
2119350 GGCACTTCGATGCA
1 GGCACTTCGGTGCA
2119364 TTTATACGAG
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 96 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACAC
Found at i:2119354 original size:69 final size:69
Alignment explanation
Indices: 2119233--2119363 Score: 172
Period size: 69 Copynumber: 1.9 Consensus size: 69
2119223 GACATCTTAT
* * * * *
2119233 ATGGCACTACGGTGCAATTCTACGCGGCACTACGGTGCAATTCTACGCGGCACTTCGGTGCAATT
1 ATGGCACTACGGTGCAATTCTACACGGCACTACAGTGCAATTATACACGGCACTTCGATGCAATT
2119298 TTAC
66 TTAC
* * * * *
2119302 ATGGCACTTCGGTGCAATTCTACATGGCACTTCAGTGCAATTATATATGGCACTTCGATGCA
1 ATGGCACTACGGTGCAATTCTACACGGCACTACAGTGCAATTATACACGGCACTTCGATGCA
2119364 TTTATACGAG
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
69 52 1.00
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (69 bp):
ATGGCACTACGGTGCAATTCTACACGGCACTACAGTGCAATTATACACGGCACTTCGATGCAATT
TTAC
Found at i:2126079 original size:23 final size:23
Alignment explanation
Indices: 2126043--2126103 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
2126033 ACATCTTATA
* *
2126043 TGGCACTACAGTGCAATTCTAAG
1 TGGCACTTCGGTGCAATTCTAAG
*
2126066 TGGCACTTCGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTAAG
*
2126089 TGGCACTTCGATGCA
1 TGGCACTTCGGTGCA
2126104 TTTATACGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTAAG
Found at i:2126111 original size:23 final size:23
Alignment explanation
Indices: 2126054--2126111 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
2126044 GGCACTACAG
* * *
2126054 TGCAATTCTAAGTGGCACTTCGG
1 TGCAATTATACGTGGCACTTCGA
*
2126077 TGCAATTCTACGTGGCACTTCGA
1 TGCAATTATACGTGGCACTTCGA
*
2126100 TGCATTTATACG
1 TGCAATTATACG
2126112 AGTTATTATG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (23 bp):
TGCAATTATACGTGGCACTTCGA
Found at i:2140639 original size:21 final size:21
Alignment explanation
Indices: 2140522--2140639 Score: 71
Period size: 21 Copynumber: 5.7 Consensus size: 21
2140512 ACGCGAAATA
**
2140522 AAAATCGCAACGCGA-TCCCC
1 AAAATCGCAACGCGATTTTCC
* ** *
2140542 AGAATCGCAAATC-AGTTTCC
1 AAAATCGCAACGCGATTTTCC
*
2140562 AAAATCGCAACGCGATTCTT-G
1 AAAATCGCAACGCGATT-TTCC
* ** *
2140583 AAAATCGCAATGCGATAGTAC
1 AAAATCGCAACGCGATTTTCC
* **
2140604 AAATTCGCATTGCGATTTTCC
1 AAAATCGCAACGCGATTTTCC
*
2140625 AGAATCGCAACGCGA
1 AAAATCGCAACGCGA
2140640 ACAAATAAAT
Statistics
Matches: 71, Mismatches: 23, Indels: 7
0.70 0.23 0.07
Matches are distributed among these distances:
19 1 0.01
20 24 0.34
21 44 0.62
22 2 0.03
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (21 bp):
AAAATCGCAACGCGATTTTCC
Found at i:2140668 original size:20 final size:20
Alignment explanation
Indices: 2140645--2140799 Score: 222
Period size: 20 Copynumber: 7.7 Consensus size: 20
2140635 CGCGAACAAA
2140645 TAAATCGCAACGCGTATCCG
1 TAAATCGCAACGCGTATCCG
*
2140665 TAAATCGCAACGTGTATCCG
1 TAAATCGCAACGCGTATCCG
*
2140685 TAAATCGCAACGCGTATCTG
1 TAAATCGCAACGCGTATCCG
*
2140705 TAAATCGCAATGCGTATCCG
1 TAAATCGCAACGCGTATCCG
* *
2140725 TATATCGCAATGCGTATCCG
1 TAAATCGCAACGCGTATCCG
* *
2140745 TAAATCGCAACGAC-AATACG
1 TAAATCGCAACG-CGTATCCG
2140765 TAAAATCGCAACGCGTATCCG
1 T-AAATCGCAACGCGTATCCG
2140786 TAAATCGCAACGCG
1 TAAATCGCAACGCG
2140800 ATTTTTAAAG
Statistics
Matches: 120, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
20 103 0.86
21 17 0.14
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.22
Consensus pattern (20 bp):
TAAATCGCAACGCGTATCCG
Found at i:2140674 original size:40 final size:39
Alignment explanation
Indices: 2140627--2140800 Score: 197
Period size: 40 Copynumber: 4.3 Consensus size: 39
2140617 GATTTTCCAG
**
2140627 AATCGCAACGCGAACAAATAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAAC-CGTAAATCGCAACGCGTATCCGTA
* * *
2140667 AATCGCAACGTGTATCCGTAAATCGCAACGCGTATCTGTA
1 AATCGCAACGCG-AACCGTAAATCGCAACGCGTATCCGTA
* * * *
2140707 AATCGCAATGCGTATCCGTATATCGCAATGCGTATCCGTA
1 AATCGCAACGCG-AACCGTAAATCGCAACGCGTATCCGTA
*
2140747 AATCGCAACGAC-AATACGTAAAATCGCAACGCGTATCCGTA
1 AATCGCAACG-CGAA-CCGT-AAATCGCAACGCGTATCCGTA
2140788 AATCGCAACGCGA
1 AATCGCAACGCGA
2140801 TTTTTAAAGC
Statistics
Matches: 114, Mismatches: 15, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 80 0.70
41 33 0.29
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.20
Consensus pattern (39 bp):
AATCGCAACGCGAACCGTAAATCGCAACGCGTATCCGTA
Found at i:2141218 original size:33 final size:33
Alignment explanation
Indices: 2141179--2141249 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
2141169 TTCACTTAGA
2141179 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* * *
2141212 TTTCATTTCGTGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
2141245 TTTCA
1 TTTCA
2141250 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.17, T:0.49
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:2141355 original size:21 final size:21
Alignment explanation
Indices: 2141329--2141405 Score: 102
Period size: 21 Copynumber: 3.7 Consensus size: 21
2141319 TGCAGAAGAG
2141329 TCGCAACGAGAGAAATGAAAA
1 TCGCAACGAGAGAAATGAAAA
* **
2141350 TCGCAACGTGA-AAATGACTA
1 TCGCAACGAGAGAAATGAAAA
*
2141370 TCTGCAACGAGAAAAATGAAAA
1 TC-GCAACGAGAGAAATGAAAA
2141392 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
2141406 TCGCAACGCG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
20 9 0.19
21 29 0.62
22 9 0.19
ACGTcount: A:0.48, C:0.17, G:0.22, T:0.13
Consensus pattern (21 bp):
TCGCAACGAGAGAAATGAAAA
Found at i:2141409 original size:14 final size:14
Alignment explanation
Indices: 2141390--2141446 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
2141380 GAAAAATGAA
2141390 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
2141404 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
2141423 AATCGCAACGAGAG
1 AATCGCAACGAGAG
2141437 AATCGCAACG
1 AATCGCAACG
2141447 CGAAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:2141421 original size:33 final size:33
Alignment explanation
Indices: 2141383--2141462 Score: 142
Period size: 33 Copynumber: 2.4 Consensus size: 33
2141373 GCAACGAGAA
2141383 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
1 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
2141416 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
1 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
**
2141449 AAACCAAAATCGCA
1 AAATGAAAATCGCA
2141463 TTGCGATTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.47, C:0.23, G:0.21, T:0.09
Consensus pattern (33 bp):
AAATGAAAATCGCAACGAGAGAATCGCAACGCG
Found at i:2141480 original size:19 final size:19
Alignment explanation
Indices: 2141458--2141585 Score: 78
Period size: 19 Copynumber: 7.1 Consensus size: 19
2141448 GAAACCAAAA
*
2141458 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
2141477 TCGCGTTGTGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
2141491 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
2141510 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
2141524 TCTCGTTGCGATTTTCATTT
1 TCGCGTTGCGATTTTCA-TT
* ***
2141544 CTCTCGTTGCGACAGTCATT
1 -TCGCGTTGCGATTTTCATT
*
2141564 CTCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
2141584 TC
1 TC
2141586 AACCAAAAGA
Statistics
Matches: 85, Mismatches: 12, Indels: 24
0.70 0.10 0.20
Matches are distributed among these distances:
14 19 0.22
16 6 0.07
17 6 0.07
19 21 0.25
20 19 0.22
21 14 0.16
ACGTcount: A:0.11, C:0.24, G:0.19, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:2141503 original size:14 final size:14
Alignment explanation
Indices: 2141480--2141536 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
2141470 TTTCATTTCG
*
2141480 CGTTGTGATTCTCT
1 CGTTGCGATTCTCT
*
2141494 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
2141513 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
2141527 CGTTGCGATT
1 CGTTGCGATT
2141537 TTCATTTCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 19 0.54
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.23, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:2141505 original size:33 final size:33
Alignment explanation
Indices: 2141463--2141585 Score: 156
Period size: 33 Copynumber: 3.5 Consensus size: 33
2141453 CAAAATCGCA
*
2141463 TTGCGATTTTCATTTCGCGTTGTGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
2141496 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
*
2141529 TTGCGATTTTCATTTCTCTCGTTGCGACAGTCATTCTCTCG
1 TTGCGATTTTCA-TT-TCGCGTT--G-C-G--ATTCTCTCG
2141570 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
2141586 AACCAAAAGA
Statistics
Matches: 80, Mismatches: 2, Indels: 10
0.87 0.02 0.11
Matches are distributed among these distances:
33 44 0.55
34 2 0.03
35 6 0.08
37 1 0.01
38 1 0.01
39 3 0.04
40 2 0.03
41 21 0.26
ACGTcount: A:0.11, C:0.24, G:0.19, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:2141547 original size:21 final size:21
Alignment explanation
Indices: 2141521--2141585 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
2141511 CGCGTTGCGA
2141521 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
2141542 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
2141562 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
2141583 TTC
1 TTC
2141586 AACCAAAAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.11, C:0.26, G:0.15, T:0.48
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:2143429 original size:93 final size:93
Alignment explanation
Indices: 2143270--2143492 Score: 437
Period size: 93 Copynumber: 2.4 Consensus size: 93
2143260 TAGATTGCTT
*
2143270 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
2143335 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
2143363 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
2143428 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
2143456 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
2143493 AATACCCTGA
Statistics
Matches: 129, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 129 1.00
ACGTcount: A:0.22, C:0.14, G:0.19, T:0.45
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:2143627 original size:14 final size:14
Alignment explanation
Indices: 2143608--2143664 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
2143598 CGAAACTTAA
2143608 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
2143622 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
*
2143641 AATCGCAACGACAG
1 AATCGCAACGAGAG
2143655 AATCGCAACG
1 AATCGCAACG
2143665 CGAAACCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 19 0.54
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.44, C:0.25, G:0.23, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:2143646 original size:19 final size:18
Alignment explanation
Indices: 2143622--2143713 Score: 65
Period size: 19 Copynumber: 5.4 Consensus size: 18
2143612 GCAACGAGAG
2143622 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAA-GAA
*
2143641 AATCGCAA--CGACAG--
1 AATCGCAACGCGAAAGAA
*
2143655 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAA-GAA
*
2143674 AATCGCAA--CG--ACAA
1 AATCGCAACGCGAAAGAA
*
2143688 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAA-GAA
2143707 AATCGCA
1 AATCGCA
2143714 TTGCGATTTT
Statistics
Matches: 60, Mismatches: 3, Indels: 20
0.72 0.04 0.24
Matches are distributed among these distances:
14 19 0.32
15 1 0.02
16 7 0.12
17 6 0.10
18 1 0.02
19 26 0.43
ACGTcount: A:0.47, C:0.28, G:0.17, T:0.08
Consensus pattern (18 bp):
AATCGCAACGCGAAAGAA
Found at i:2143648 original size:33 final size:33
Alignment explanation
Indices: 2143590--2143713 Score: 185
Period size: 33 Copynumber: 3.7 Consensus size: 33
2143580 TAGTTTACTT
* * *
2143590 TCGCAACACGAAACTTAAAATCGCAACGAGAGAA
1 TCGCAACGCGAAAC-CAAAATCGCAACGACAGAA
**
2143624 TCGCAACGCGAAATGAAAATCGCAACGACAGAA
1 TCGCAACGCGAAACCAAAATCGCAACGACAGAA
*
2143657 TCGCAACGCGAAACCAAAATCGCAACGACAAAA
1 TCGCAACGCGAAACCAAAATCGCAACGACAGAA
2143690 TCGCAACGCGAAACCAAAATCGCA
1 TCGCAACGCGAAACCAAAATCGCA
2143714 TTGCGATTTT
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
33 71 0.86
34 12 0.14
ACGTcount: A:0.46, C:0.27, G:0.18, T:0.09
Consensus pattern (33 bp):
TCGCAACGCGAAACCAAAATCGCAACGACAGAA
Found at i:2143690 original size:14 final size:14
Alignment explanation
Indices: 2143639--2143697 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
2143629 ACGCGAAATG
2143639 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
2143653 AGAATCGCAACGCGAAACC
1 AAAATCGCAA--CG--A-C
2143672 AAAATCGCAACGAC
1 AAAATCGCAACGAC
2143686 AAAATCGCAACG
1 AAAATCGCAACG
2143698 CGAAACCAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 22 0.58
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 10 0.26
ACGTcount: A:0.47, C:0.29, G:0.17, T:0.07
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:2143731 original size:19 final size:19
Alignment explanation
Indices: 2143709--2143881 Score: 150
Period size: 19 Copynumber: 9.6 Consensus size: 19
2143699 GAAACCAAAA
*
2143709 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
2143728 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
2143742 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
2143761 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
2143777 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
2143794 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
* **
2143813 TCGCGTTGTGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
* *
2143832 TCTCGTTGCGATTCTCATT
1 TCGCGTTGCGATTTTCATT
*
2143851 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
2143871 TCGTGTTGCGA
1 TCGCGTTGCGA
2143882 AAGTAAACTA
Statistics
Matches: 124, Mismatches: 19, Indels: 21
0.76 0.12 0.13
Matches are distributed among these distances:
14 17 0.14
16 8 0.06
17 8 0.06
19 79 0.64
20 12 0.10
ACGTcount: A:0.10, C:0.20, G:0.24, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:2143750 original size:14 final size:14
Alignment explanation
Indices: 2143731--2143787 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
2143721 TTTCATTTCG
2143731 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
2143745 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TCT
*
2143762 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTCT
2143778 CGTTGCGATT
1 CGTTGCGATT
2143788 TTCATTTCGC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 16 0.44
16 7 0.19
17 7 0.19
19 6 0.17
ACGTcount: A:0.11, C:0.23, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:2143756 original size:33 final size:33
Alignment explanation
Indices: 2143714--2143806 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
2143704 CAAAATCGCA
2143714 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
2143747 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
2143780 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
2143807 TTGGTTTCGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:2143839 original size:38 final size:38
Alignment explanation
Indices: 2143709--2143881 Score: 159
Period size: 33 Copynumber: 4.8 Consensus size: 38
2143699 GAAACCAAAA
*
2143709 TCGCATTGCGATTTTCATTTCGCGTTGCGATTCTC---
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
* *
2143744 T--CGTTGCGATTTTCATTTCGCATTGCGA-T-TC-TG
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
* **
2143777 T--CGTTGCGATTTTCATTTCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
* ** *
2143813 TCGCGTTGTGATTTTGGTTTCTCGTTGCGATTCTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
* *
2143851 TCGCGTTGCGATTTTAAGTTTCGTGTTGCGA
1 TCGCGTTGCGATTTTCA-TTTCGCGTTGCGA
2143882 AAGTAAACTA
Statistics
Matches: 113, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
31 2 0.02
32 1 0.01
33 52 0.46
34 1 0.01
35 2 0.02
36 2 0.02
38 42 0.37
39 11 0.10
ACGTcount: A:0.10, C:0.20, G:0.24, T:0.46
Consensus pattern (38 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
Found at i:2145742 original size:14 final size:14
Alignment explanation
Indices: 2145723--2145758 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
2145713 ATTGTTTAAT
2145723 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
2145737 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
2145751 TGATTTGT
1 TGATTTGT
2145759 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:2145881 original size:19 final size:19
Alignment explanation
Indices: 2145868--2145962 Score: 137
Period size: 19 Copynumber: 5.2 Consensus size: 19
2145858 AATGACTATT
2145868 GCAATGCGAAATGAAAATC
1 GCAATGCGAAATGAAAATC
2145887 GCAATGCGAAATGAAAATC
1 GCAATGCGAAATGAAAATC
*
2145906 GCAA--CG--A-GAGAATC
1 GCAATGCGAAATGAAAATC
2145920 GCAATGCGAAATGAAAATC
1 GCAATGCGAAATGAAAATC
2145939 GCAATGCGGAAATGAAAATC
1 GCAATGC-GAAATGAAAATC
2145959 GCAA
1 GCAA
2145963 CGAGAGAATC
Statistics
Matches: 68, Mismatches: 2, Indels: 11
0.84 0.02 0.14
Matches are distributed among these distances:
14 10 0.15
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 36 0.53
20 16 0.24
ACGTcount: A:0.46, C:0.17, G:0.23, T:0.14
Consensus pattern (19 bp):
GCAATGCGAAATGAAAATC
Found at i:2145994 original size:53 final size:53
Alignment explanation
Indices: 2145868--2145981 Score: 221
Period size: 53 Copynumber: 2.2 Consensus size: 53
2145858 AATGACTATT
2145868 GCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATC
1 GCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATC
2145920 GCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATC
1 GCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATC
2145973 GCAATGCGA
1 GCAATGCGA
2145982 TTTTCATTTC
Statistics
Matches: 61, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 26 0.43
53 35 0.57
ACGTcount: A:0.45, C:0.18, G:0.25, T:0.13
Consensus pattern (53 bp):
GCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATC
Found at i:2146053 original size:33 final size:33
Alignment explanation
Indices: 2145995--2146161 Score: 151
Period size: 33 Copynumber: 4.8 Consensus size: 33
2145985 TCATTTCGCA
2145995 TTGCGATTTTCATTTCCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTT-CGCATTGCGATTCTCTCG
*
2146029 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCG
1 TTGCGATTTTCATTTCGCATTGCGA--TTC-TCT-CG
* * * * *
2146066 CATTGCGATTCTCTCGTTGCG-ATTTTC-ATT-TCCCA
1 --TTGCGATT-T-TCATTTCGCA-TTGCGATTCTCTCG
2146101 TTGCGATTTTCATTTACGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTT-CGCATTGCGATTCTCTCG
*
2146135 TTGCGATTTTAATTTCGCATTGCGATT
1 TTGCGATTTTCATTTCGCATTGCGATT
2146162 TTCATTTCCG
Statistics
Matches: 107, Mismatches: 13, Indels: 27
0.73 0.09 0.18
Matches are distributed among these distances:
31 4 0.04
32 6 0.06
33 34 0.32
34 32 0.30
35 4 0.04
36 3 0.03
37 2 0.02
38 2 0.02
39 8 0.07
40 3 0.03
41 9 0.08
ACGTcount: A:0.14, C:0.23, G:0.17, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
Found at i:2146282 original size:33 final size:35
Alignment explanation
Indices: 2145977--2146317 Score: 238
Period size: 34 Copynumber: 9.7 Consensus size: 35
2145967 AGAATCGCAA
2145977 TGCGATTTTCATTT-CGCATTGCGATTTTCAT--T
1 TGCGATTTTCATTTCCGCATTGCGATTTTCATCGT
* *
2146009 TCCGCA-TTGCGATTCTCTCG--TTGCGATTTTCATTTCGCAT
1 TGCG-ATTTTC-ATT-TC-CGCATTGCGATTTTCA--TCG--T
*
2146049 TGCGATTTTCATTTCCGCATTGCGATTCTC-TCGT
1 TGCGATTTTCATTTCCGCATTGCGATTTTCATCGT
2146083 TGCGATTTTCATTTCC-CATTGCGATTTTCAT--T
1 TGCGATTTTCATTTCCGCATTGCGATTTTCATCGT
* * *
2146115 TACGCA-TTGCGATTCTCTCG--TTGCGATTTTAATTTCGCAT
1 TGCG-ATTTTC-ATT-TC-CGCATTGCGATTTTCA--TCG--T
*
2146155 TGCGATTTTCATTTCCGCATTGCGATTCTC-TCGT
1 TGCGATTTTCATTTCCGCATTGCGATTTTCATCGT
2146189 TGCGATTTTCATTT-CGCATTGCG--TTTCATTTCGCAT
1 TGCGATTTTCATTTCCGCATTGCGATTTTCA--TCG--T
2146225 TGCGATTTTCATTTCCGCATTGCGATTTTCAT-GT
1 TGCGATTTTCATTTCCGCATTGCGATTTTCATCGT
*
2146259 TG-GTATTTTCATTT-CGCATTGCGATTCTC-TCGT
1 TGCG-ATTTTCATTTCCGCATTGCGATTTTCATCGT
* * **
2146292 TGCGATTGTAATTTCCGTGTTGCGAT
1 TGCGATTTTCATTTCCGCATTGCGAT
2146318 AGTCAAATGC
Statistics
Matches: 249, Mismatches: 19, Indels: 80
0.72 0.05 0.23
Matches are distributed among these distances:
31 3 0.01
32 14 0.06
33 56 0.22
34 85 0.34
35 1 0.00
36 26 0.10
37 14 0.06
38 4 0.02
39 32 0.13
40 14 0.06
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.46
Consensus pattern (35 bp):
TGCGATTTTCATTTCCGCATTGCGATTTTCATCGT
Found at i:2146313 original size:53 final size:53
Alignment explanation
Indices: 2145977--2146298 Score: 475
Period size: 53 Copynumber: 6.1 Consensus size: 53
2145967 AGAATCGCAA
2145977 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
2146030 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
* *
2146083 TGCGATTTTCATTTCCCATTGCGATTTTCATTTACGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
*
2146136 TGCGATTTTAATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
*
2146189 TGCGATTTTCATTTCGCATTGCG--TTTCATTT-CGCATTGCGATTTTCATTTCCGCAT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGA--TTC-TCT-CG--T
2146245 TGCGATTTTCA--T-G--TTG-GTATTTTCATTT-CGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCG-ATTTTCATTTCCGCATTGCGATTCTCTCGT
2146292 TGCGATT
1 TGCGATT
2146299 GTAATTTCCG
Statistics
Matches: 252, Mismatches: 8, Indels: 24
0.89 0.03 0.08
Matches are distributed among these distances:
47 8 0.03
49 2 0.01
50 13 0.05
51 14 0.06
52 3 0.01
53 197 0.78
54 3 0.01
56 12 0.05
ACGTcount: A:0.14, C:0.23, G:0.17, T:0.46
Consensus pattern (53 bp):
TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
Found at i:2149549 original size:20 final size:20
Alignment explanation
Indices: 2149521--2149749 Score: 235
Period size: 20 Copynumber: 11.4 Consensus size: 20
2149511 AAATTTCAGT
* * *
2149521 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
2149541 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
* *
2149561 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
2149581 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
*
2149601 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
2149621 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
2149641 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* * *
2149661 GTTGCTATTTACGGATACAC
1 GTTGCGATTTACGGATTCGC
* *
2149681 GTTGCGGTTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
2149701 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCGC
* **
2149721 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCGC
2149741 GTTGCGATT
1 GTTGCGATT
2149750 CTGGAAAATC
Statistics
Matches: 181, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
20 180 0.99
21 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.37
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCGC
Found at i:2153891 original size:7 final size:7
Alignment explanation
Indices: 2153879--2154042 Score: 267
Period size: 7 Copynumber: 23.3 Consensus size: 7
2153869 TGAGGGAAAT
2153879 GAAGGAA
1 GAAGGAA
2153886 GAAGGAA
1 GAAGGAA
2153893 GAAGGAA
1 GAAGGAA
2153900 GAAGGAA
1 GAAGGAA
2153907 GAAGGAA
1 GAAGGAA
2153914 GAAGGAA
1 GAAGGAA
2153921 GAAGGAA
1 GAAGGAA
2153928 GAAGGAA
1 GAAGGAA
2153935 GAAGGAA
1 GAAGGAA
2153942 GAAGGAA
1 GAAGGAA
2153949 GAAGGAA
1 GAAGGAA
2153956 GAAGGAA
1 GAAGGAA
2153963 GAAGGAA
1 GAAGGAA
2153970 GAAGGAA
1 GAAGGAA
2153977 GAAGGAA
1 GAAGGAA
2153984 GAAGGAA
1 GAAGGAA
*
2153991 AAAGGAA
1 GAAGGAA
*
2153998 AAAGGAA
1 GAAGGAA
2154005 -AAGGAA
1 GAAGGAA
2154011 GAAGGAA
1 GAAGGAA
*
2154018 GAAAGAA
1 GAAGGAA
2154025 GAAAGGAA
1 G-AAGGAA
*
2154033 TAAGAGAA
1 GAAG-GAA
2154041 GA
1 GA
2154043 TGGATGTAAT
Statistics
Matches: 149, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
6 6 0.04
7 134 0.90
8 9 0.06
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.01
Consensus pattern (7 bp):
GAAGGAA
Found at i:2154037 original size:11 final size:11
Alignment explanation
Indices: 2153883--2154037 Score: 89
Period size: 11 Copynumber: 14.5 Consensus size: 11
2153873 GGAAATGAAG
2153883 GAAG-AAGGAA
1 GAAGAAAGGAA
*
2153893 GAAGGAA-GAA
1 GAAGAAAGGAA
2153903 GGAAG-AAGGAA
1 -GAAGAAAGGAA
*
2153914 GAAGGAA-GAA
1 GAAGAAAGGAA
2153924 GGAAG-AAGGAA
1 -GAAGAAAGGAA
*
2153935 GAAGGAA-GAA
1 GAAGAAAGGAA
2153945 GGAAG-AAGGAA
1 -GAAGAAAGGAA
*
2153956 GAAGGAA-GAA
1 GAAGAAAGGAA
2153966 GGAAG-AAGGAA
1 -GAAGAAAGGAA
*
2153977 GAAGGAA-GAA
1 GAAGAAAGGAA
2153987 GGAA-AAAGGAA
1 -GAAGAAAGGAA
*
2153998 AAAGGAAAAGGAA
1 GAA-G-AAAGGAA
* *
2154011 GAAGGAAGAAA
1 GAAGAAAGGAA
2154022 GAAGAAAGGAA
1 GAAGAAAGGAA
*
2154033 TAAGA
1 GAAGA
2154038 GAAGATGGAT
Statistics
Matches: 119, Mismatches: 8, Indels: 35
0.73 0.05 0.22
Matches are distributed among these distances:
10 47 0.39
11 62 0.52
12 1 0.01
13 9 0.08
ACGTcount: A:0.60, C:0.00, G:0.39, T:0.01
Consensus pattern (11 bp):
GAAGAAAGGAA
Found at i:2154958 original size:24 final size:25
Alignment explanation
Indices: 2154917--2154965 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
2154907 TCTTGAACGA
*
2154917 ATTTATTTTCTCTTAATTTT-ATTT
1 ATTTATTTTCTCTAAATTTTGATTT
2154941 ATTTATTTTCAT-TAAATTTTGATTT
1 ATTTATTTTC-TCTAAATTTTGATTT
2154966 TTTTTGAGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.24, C:0.06, G:0.02, T:0.67
Consensus pattern (25 bp):
ATTTATTTTCTCTAAATTTTGATTT
Found at i:2155645 original size:183 final size:181
Alignment explanation
Indices: 2155251--2155805 Score: 804
Period size: 174 Copynumber: 3.1 Consensus size: 181
2155241 ATCGATACAA
* *
2155251 ATAAAATATGTATCGATTCATAACAATATAACAGGTAAAAATATAACAAAACCGGTTTTATTATG
1 ATAAAA-ATGTATCGATCCATAACAATATAACAGGTAAAAATAT-ACAAAACCGGTTTCATTATG
**
2155316 ACAAAACCGGTAAAGCGCTACTAGATATGTTGAAAGTATCGATTCCATTGAAATAAATAT-ACAC
64 ACAAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTATCGATTCCATTGAAATAAATATCACAC
* *
2155380 TTTTGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTTGATATTTT
129 TTTTGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTT
*
2155433 ATAAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGGTTTCATTATGA
1 ATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATAT-ACAAAACCGGTTTCATTATGA
* * * *
2155498 AAAAACCGGTAAAGCGCTACCGGATATATTTAAAGTATCGATTCCATTGAAATAAGTATCAACAC
65 CAAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTATCGATTCCATTGAAATAAATATC-ACAC
*
2155563 TTTTGAAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTT
129 TTTTGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTT
* * * *
2155616 ATAAAAATTTATCAATCCATAACAATATAATAGGT-AAAA-AT------CCGATTTCATTATGAC
1 ATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATACAAAACCGGTTTCATTATGAC
*
2155673 AAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTATCGATTCCATTGAAATAATTATCGACACT
66 AAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTATCGATTCCATTGAAATAAATATC-ACACT
* * * *
2155738 TTTGGAATTTAAAAGAAAAGAAGTAATAGAGCCTATAAAGTATCGATACTTT
130 TTTGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTT
*
2155790 ATAAAAATATATCGAT
1 ATAAAAATGTATCGAT
2155806 TTTCATTTCG
Statistics
Matches: 341, Mismatches: 30, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
174 136 0.40
181 110 0.32
182 10 0.03
183 85 0.25
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.29
Consensus pattern (181 bp):
ATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATACAAAACCGGTTTCATTATGAC
AAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTATCGATTCCATTGAAATAAATATCACACTT
TTGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTT
Found at i:2155882 original size:53 final size:53
Alignment explanation
Indices: 2155802--2156090 Score: 501
Period size: 53 Copynumber: 5.5 Consensus size: 53
2155792 AAAAATATAT
*
2155802 CGATTTTCATTTCGCATTGCGATTTTCATTTCCACATTGCGATTCTCTCGTTG
1 CGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTG
2155855 CGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTG
1 CGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTG
* *
2155908 CGATTTTCATTTCCCATTGCGATTTTCATTTACGCATTGCGATTCTCTCGTTG
1 CGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTG
*
2155961 CGATTTTAATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTG
1 CGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTG
*
2156014 CGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTTTCAT-GTTG
1 CGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTC-TCGTTG
2156067 -GTATTTTCATTTCGCATTGCGATT
1 CG-ATTTTCATTTCGCATTGCGATT
2156091 CTCTCGTTGC
Statistics
Matches: 226, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
52 1 0.00
53 224 0.99
54 1 0.00
ACGTcount: A:0.15, C:0.23, G:0.16, T:0.46
Consensus pattern (53 bp):
CGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTG
Found at i:2158620 original size:24 final size:24
Alignment explanation
Indices: 2158586--2158632 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
2158576 CTGAAACATC
2158586 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
2158610 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
2158633 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:2159353 original size:20 final size:20
Alignment explanation
Indices: 2159325--2159553 Score: 235
Period size: 20 Copynumber: 11.4 Consensus size: 20
2159315 AAATTTCAGT
* * *
2159325 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
2159345 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
* *
2159365 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
2159385 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
*
2159405 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
2159425 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
2159445 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* * *
2159465 GTTGCTATTTACGGATACAC
1 GTTGCGATTTACGGATTCGC
* *
2159485 GTTGCGGTTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
2159505 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCGC
* **
2159525 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCGC
2159545 GTTGCGATT
1 GTTGCGATT
2159554 CTGGAAAATC
Statistics
Matches: 181, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
20 180 0.99
21 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.37
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCGC
Found at i:2164076 original size:7 final size:7
Alignment explanation
Indices: 2164064--2164250 Score: 255
Period size: 7 Copynumber: 27.3 Consensus size: 7
2164054 TGAGGGAAAT
2164064 GAAGGAA
1 GAAGGAA
2164071 GAAGGAA
1 GAAGGAA
2164078 GAAGGAA
1 GAAGGAA
2164085 GAAGGAA
1 GAAGGAA
2164092 GAAGGAA
1 GAAGGAA
2164099 GAAGGAA
1 GAAGGAA
2164106 GAA-G--
1 GAAGGAA
2164110 GAAGGAA
1 GAAGGAA
2164117 GAAGGAA
1 GAAGGAA
2164124 GAAGGAA
1 GAAGGAA
2164131 GAAGGAA
1 GAAGGAA
2164138 GAAGGAA
1 GAAGGAA
2164145 GAAGAAGAA
1 GAAG--GAA
2164154 GAAGGAA
1 GAAGGAA
2164161 GAAGGAA
1 GAAGGAA
2164168 GAAGGAA
1 GAAGGAA
2164175 GAA-GAA
1 GAAGGAA
2164181 GAAGGAA
1 GAAGGAA
2164188 GAAGGAA
1 GAAGGAA
2164195 GAA-GAA
1 GAAGGAA
2164201 GAAGGAA
1 GAAGGAA
2164208 -AAGGAA
1 GAAGGAA
*
2164214 AAAGGAA
1 GAAGGAA
2164221 G--GGAA
1 GAAGGAA
*
2164226 GAAAGAA
1 GAAGGAA
2164233 GAAAGGAA
1 G-AAGGAA
*
2164241 TAAGAGAA
1 GAAG-GAA
2164249 GA
1 GA
2164251 TGGATGTAAT
Statistics
Matches: 163, Mismatches: 5, Indels: 23
0.85 0.03 0.12
Matches are distributed among these distances:
4 3 0.02
5 6 0.04
6 19 0.12
7 119 0.73
8 9 0.06
9 7 0.04
ACGTcount: A:0.59, C:0.00, G:0.40, T:0.01
Consensus pattern (7 bp):
GAAGGAA
Found at i:2164081 original size:3 final size:3
Alignment explanation
Indices: 2164068--2164204 Score: 130
Period size: 3 Copynumber: 40.3 Consensus size: 3
2164058 GGAAATGAAG
2164068 GAA GAA GGAA GAA GGAA GAA GGAA GAA GGAA GAA GGAA GAA GGAA GGAA
1 GAA GAA -GAA GAA -GAA GAA -GAA GAA -GAA GAA -GAA GAA -GAA -GAA
2164117 GAA GGAA GAA GGAA GAA GGAA GAA GGAA GAA GAA GAA GAA GGAA GAA
1 GAA -GAA GAA -GAA GAA -GAA GAA -GAA GAA GAA GAA GAA -GAA GAA
2164164 GGAA GAA GGAA GAA GAA GAA GGAA GAA GGAA GAA GAA GAA G
1 -GAA GAA -GAA GAA GAA GAA -GAA GAA -GAA GAA GAA GAA G
2164205 GAAAAGGAAA
Statistics
Matches: 119, Mismatches: 0, Indels: 30
0.80 0.00 0.20
Matches are distributed among these distances:
3 70 0.59
4 49 0.41
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:2165167 original size:24 final size:25
Alignment explanation
Indices: 2165126--2165174 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
2165116 TCTTGAACGA
*
2165126 ATTTATTTTCTCTTAATTTT-ATTT
1 ATTTATTTTCTCTAAATTTTGATTT
2165150 ATTTATTTTCAT-TAAATTTTGATTT
1 ATTTATTTTC-TCTAAATTTTGATTT
2165175 TTTTTTGAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.24, C:0.06, G:0.02, T:0.67
Consensus pattern (25 bp):
ATTTATTTTCTCTAAATTTTGATTT
Found at i:2165856 original size:183 final size:182
Alignment explanation
Indices: 2165462--2166107 Score: 907
Period size: 174 Copynumber: 3.6 Consensus size: 182
2165452 ATCGATACAA
* * *
2165462 ATAAAATATTTATCGATTCATAACAATATAACAGGTAAAAATATAACAAAACCGGTTTTATTATG
1 ATAAAA-ATTTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTTTCATTATG
* **
2165527 ACAGAACCGGTAAAGCGCTACTAGATATGTTGAAAGTATCGATTCCATTGAAATAAATAT-ACAC
65 ACAAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTATCGATTCCATTGAAATAAATATCACAC
* *
2165591 TTTTGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTTGATATTTT
130 TTTTGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTT
* *
2165644 ATAAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGGTTTCATTATGA
1 ATAAAAATTTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTTTCATTATGA
* * * *
2165709 AAAAACCGGTAAAGCGCTACCGGATATATTTAAAGTATCGATTCCATTGAAATAAGTATCAACAC
66 CAAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTATCGATTCCATTGAAATAAATATC-ACAC
*
2165774 TTTTGAAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTT
130 TTTTGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTT
* * *
2165827 ATAAAAATTTATCAATCCATAACAATATAATAGGT-AAAA-AT-------CCGATTTCATTATGA
1 ATAAAAATTTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTTTCATTATGA
*
2165883 CAAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTATCGATTCCATTGAAATAATTATCGACAC
66 CAAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTATCGATTCCATTGAAATAAATATC-ACAC
* * * *
2165948 TTTTGGAATTTAAAAGAAAAGAAGTAATAGAGCCTATAAAGTATCGATACTTT
130 TTTTGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTT
* ** * *
2166001 ATAAAAATATATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAATGGTCTCATTATTA
1 ATAAAAATTTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTTTCATTATGA
* * * *
2166066 CAAAACCGGTAAAGCACTACTGGATATTTTGAATGTATCGAT
66 CAAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTATCGAT
2166108 ACTTTAATAA
Statistics
Matches: 411, Mismatches: 42, Indels: 21
0.87 0.09 0.04
Matches are distributed among these distances:
174 154 0.37
175 4 0.01
176 2 0.00
181 108 0.26
182 10 0.02
183 133 0.32
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.29
Consensus pattern (182 bp):
ATAAAAATTTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTTTCATTATGA
CAAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTATCGATTCCATTGAAATAAATATCACACT
TTTGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTT
Found at i:2168372 original size:15 final size:15
Alignment explanation
Indices: 2168350--2168395 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 15
2168340 AGGCAGTGGG
2168350 GAGGGATGACGGTGA
1 GAGGGATGACGGTGA
*
2168365 GTGGGATGACGGTGA
1 GAGGGATGACGGTGA
*
2168380 GAGGGACGACGGTGA
1 GAGGGATGACGGTGA
2168395 G
1 G
2168396 GGAAAATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.24, C:0.09, G:0.54, T:0.13
Consensus pattern (15 bp):
GAGGGATGACGGTGA
Found at i:2168616 original size:12 final size:12
Alignment explanation
Indices: 2168601--2168625 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2168591 AAAAATTGAT
2168601 GGAGTGGTGAAG
1 GGAGTGGTGAAG
2168613 GGAGTGGTGAAG
1 GGAGTGGTGAAG
2168625 G
1 G
2168626 AAGTTGTGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.60, T:0.16
Consensus pattern (12 bp):
GGAGTGGTGAAG
Found at i:2173721 original size:200 final size:198
Alignment explanation
Indices: 2173376--2174163 Score: 1095
Period size: 200 Copynumber: 4.0 Consensus size: 198
2173366 TCGATACTTT
*
2173376 TTTTGGTCCAGAATGAATGCCTAACGAGGTGCACACATAAAGTGTCGATACATTTAAAATTGTAT
1 TTTTGGTCCAGAATGAATGCCCAACGAGGTGCACACATAAAGTGTCGATACATTTAAAATTGTAT
* * *
2173441 TGATCCCAAAAACATCG-AACCGATAATTATAATGTACTAGGTAAATTTACAATGTAACCGATAG
66 CGATCCCAAAAACATCGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTAG
2173505 AAATATACCGGTTTAATTAGAAAATAGGTCAACATAATGTATCAACACTTTTTAAATTTGTGTCG
131 AAATATACC-GTTTAATTAGAAAATAGGTCAACATAATGTATCAACACTTTTTAAATTTGTGTCG
*
2173570 ATGC
195 ATAC
* * * * *
2173574 TTTTGGTCTAGAATGAATGTCCAACGAGGTGTACGCATAAAGTGTCGATACATTTATTAAA-AGT
1 TTTTGGTCCAGAATGAATGCCCAACGAGGTGCACACATAAAGTGTCGATACATTTA--AAATTGT
* *
2173638 ATCGATCCAAAAAACATTGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGT
64 ATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGT
* * *
2173703 AGAAATATACCTGTTTAATTAGAAAATAGGTCCATATAATGTATCGACACTTTTTAAATTTGTGT
129 AGAAATATACC-GTTTAATTAGAAAATAGGTCAACATAATGTATCAACACTTTTTAAATTTGTGT
2173768 CGATAC
193 CGATAC
* *
2173774 TTTAT-GTTCAGAATGAATGCCCAACAAGGTGCACACATAAAGTGTCGATACATTTAAAATTGTA
1 TTT-TGGTCCAGAATGAATGCCCAACGAGGTGCACACATAAAGTGTCGATACATTTAAAATTGTA
* **
2173838 TCTATCCC----A-A---AAA-C-ATAATTATAATGTAATAGGTAAATTTACAATGTAACAAGTA
65 TCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTA
* *
2173893 TAAATATATCAGTTTAATTAGAAAATAGGTCAACATAATGTATCAACACTTTTTAAATTTGTGTC
130 GAAATATA-CCGTTTAATTAGAAAATAGGTCAACATAATGTATCAACACTTTTTAAATTTGTGTC
2173958 GATAC
194 GATAC
*
2173963 TTTTTGTCCAGAATGAATGCCCAA-GAGGTGCACACATAAAGTGTCGATACATTTAAAATTGTAT
1 TTTTGGTCCAGAATGAATGCCCAACGAGGTGCACACATAAAGTGTCGATACATTTAAAATTGTAT
* * * *
2174027 CGATCCCAAAAATATCGAAACCGATAATTATAATGTAATAGGTAAATTTATAATGTAACGGGTAA
66 CGATCCCAAAAACATCGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTAG
* * * * *
2174092 AAATATACCGATTTTATTA-AAGAATAGGTAAACATATTGAATCAACACTTTTTAAA-TTGTATC
131 AAATATACCG-TTTAATTAGAA-AATAGGTCAACATAATGTATCAACACTTTTTAAATTTGTGTC
*
2174155 GATAT
194 GATAC
2174160 TTTT
1 TTTT
2174164 TAAATTACAC
Statistics
Matches: 525, Mismatches: 46, Indels: 39
0.86 0.08 0.06
Matches are distributed among these distances:
188 46 0.09
189 123 0.23
190 2 0.00
191 3 0.01
192 1 0.00
193 1 0.00
194 1 0.00
195 1 0.00
196 3 0.01
197 19 0.04
198 137 0.26
199 27 0.05
200 160 0.30
201 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.32
Consensus pattern (198 bp):
TTTTGGTCCAGAATGAATGCCCAACGAGGTGCACACATAAAGTGTCGATACATTTAAAATTGTAT
CGATCCCAAAAACATCGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTAG
AAATATACCGTTTAATTAGAAAATAGGTCAACATAATGTATCAACACTTTTTAAATTTGTGTCGA
TAC
Found at i:2173978 original size:389 final size:391
Alignment explanation
Indices: 2173384--2174158 Score: 1120
Period size: 389 Copynumber: 2.0 Consensus size: 391
2173374 TTTTTTGGTC
* *
2173384 CAGAATGAATGCCTAACGAGGTGCACACATAAAGTGTCGATACATTTAAAATTGTATTGATCCCA
1 CAGAATGAATGCCCAACAAGGTGCACACATAAAGTGTCGATACATTTAAAATTGTATTGATCCC-
* *
2173449 AAAACATCGAACCGATAATTATAATGTACTAGGTAAATTTACAATGTAACCGATAGAAATATACC
65 -AAACA-C-AACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACAGATAGAAATATACC
* *
2173514 GGTTTAATTAGAAAATAGGTCAACATAATGTATCAACACTTTTTAAATTTGTGTCGATGCTTTTG
127 AGTTTAATTAGAAAATAGGTCAACATAATGTATCAACACTTTTTAAATTTGTGTCGATACTTTTG
* * * *
2173579 GTCTAGAATGAATGTCCAACGAGGTGTACGCATAAAGTGTCGATACATTTATTAAA-AGTATCGA
192 GTCCAGAATGAATGCCCAA-GAGGTGCACACATAAAGTGTCGATACATTTA--AAATAGTATCGA
* *
2173643 TCCAAAAAACATTGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTAGAAA
254 TCCAAAAAACATCGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTAAAAA
** * * * *
2173708 TATACCTG-TTTAATTAGAA-AATAGGTCCATATAATGTATCGACACTTTTTAAATTTGTGTCGA
319 TATACC-GATTTAATTA-AAGAATAGGTAAACATAATGAATCAACACTTTTTAAA-TTGTATCGA
2173771 TACTTTATGTT
381 TACTTTATGTT
2173782 CAGAATGAATGCCCAACAAGGTGCACACATAAAGTGTCGATACATTTAAAATTGTATCT-ATCCC
1 CAGAATGAATGCCCAACAAGGTGCACACATAAAGTGTCGATACATTTAAAATTGTAT-TGATCCC
* *
2173846 -AA-A-AA-C-ATAATTATAATGTAATAGGTAAATTTACAATGTAACA-AGTATAAATATATCAG
65 AAACACAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACAGA-TAGAAATATACCAG
*
2173905 TTTAATTAGAAAATAGGTCAACATAATGTATCAACACTTTTTAAATTTGTGTCGATACTTTTTGT
129 TTTAATTAGAAAATAGGTCAACATAATGTATCAACACTTTTTAAATTTGTGTCGATACTTTTGGT
* *
2173970 CCAGAATGAATGCCCAAGAGGTGCACACATAAAGTGTCGATACATTTAAAATTGTATCGATCCCA
194 CCAGAATGAATGCCCAAGAGGTGCACACATAAAGTGTCGATACATTTAAAATAGTATCGATCCAA
* * *
2174035 AAAATATCGAAACCGATAATTATAATGTAATAGGTAAATTTATAATGTAACGGGTAAAAATATAC
259 AAAACATCGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTAAAAATATAC
* *
2174100 CGATTTTATTAAAGAATAGGTAAACATATTGAATCAACACTTTTTAAATTGTATCGATA
324 CGATTTAATTAAAGAATAGGTAAACATAATGAATCAACACTTTTTAAATTGTATCGATA
2174159 TTTTTTAAAT
Statistics
Matches: 344, Mismatches: 28, Indels: 22
0.87 0.07 0.06
Matches are distributed among these distances:
386 16 0.05
387 107 0.31
388 30 0.09
389 124 0.36
390 1 0.00
391 2 0.01
394 1 0.00
395 2 0.01
398 60 0.17
399 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.32
Consensus pattern (391 bp):
CAGAATGAATGCCCAACAAGGTGCACACATAAAGTGTCGATACATTTAAAATTGTATTGATCCCA
AACACAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACAGATAGAAATATACCAGTT
TAATTAGAAAATAGGTCAACATAATGTATCAACACTTTTTAAATTTGTGTCGATACTTTTGGTCC
AGAATGAATGCCCAAGAGGTGCACACATAAAGTGTCGATACATTTAAAATAGTATCGATCCAAAA
AACATCGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTAAAAATATACCG
ATTTAATTAAAGAATAGGTAAACATAATGAATCAACACTTTTTAAATTGTATCGATACTTTATGT
T
Found at i:2174090 original size:20 final size:20
Alignment explanation
Indices: 2174054--2174092 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2174044 AAACCGATAA
*
2174054 TTATAATGTAATAGGTAAAT
1 TTATAATGTAACAGGTAAAT
*
2174074 TTATAATGTAACGGGTAAA
1 TTATAATGTAACAGGTAAA
2174093 AATATACCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.18, T:0.36
Consensus pattern (20 bp):
TTATAATGTAACAGGTAAAT
Found at i:2174098 original size:20 final size:20
Alignment explanation
Indices: 2174055--2174098 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
2174045 AACCGATAAT
* **
2174055 TATAATGTAATAGGTAAATT
1 TATAATGTAACAGGTAAAAA
*
2174075 TATAATGTAACGGGTAAAAA
1 TATAATGTAACAGGTAAAAA
2174095 TATA
1 TATA
2174099 CCGATTTTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.48, C:0.02, G:0.16, T:0.34
Consensus pattern (20 bp):
TATAATGTAACAGGTAAAAA
Found at i:2176560 original size:24 final size:24
Alignment explanation
Indices: 2176522--2176573 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
2176512 TTTCATGTTC
2176522 ATTTCATATTTAATTGGAGTTTGA
1 ATTTCATATTTAATTGGAGTTTGA
*
2176546 ATTTCA-ATTTCAATTTGAGTTTGA
1 ATTTCATATTT-AATTGGAGTTTGA
2176570 ATTT
1 ATTT
2176574 TAATATAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 4 0.15
24 22 0.85
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (24 bp):
ATTTCATATTTAATTGGAGTTTGA
Found at i:2176584 original size:24 final size:24
Alignment explanation
Indices: 2176533--2176585 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
2176523 TTTCATATTT
* * *
2176533 AATTGGAGTTTGAATTTCAATTTC
1 AATTTGAGTTTGAATTTCAATATA
*
2176557 AATTTGAGTTTGAATTTTAATATA
1 AATTTGAGTTTGAATTTCAATATA
2176581 AATTT
1 AATTT
2176586 TGGCTCCACT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.34, C:0.04, G:0.13, T:0.49
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTCAATATA
Found at i:2178326 original size:200 final size:200
Alignment explanation
Indices: 2177980--2178798 Score: 1286
Period size: 200 Copynumber: 4.1 Consensus size: 200
2177970 TGTATCGACG
* * *
2177980 CATTTATTGTAAGTATCGATCCAAAAAACATCGAAA-TGATAATTATAAACTAATAGGTAAATTT
1 CATTTATTGTAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAAGTAATAGGTAAATTT
** * *
2178044 ACAATGTAACTTGTAAAAATATA-CTGGTTTTATGACAGAATAGGTCAATATAATGTATTGATAC
66 ACAATGTAACCAGTAAAAATATATC-GGTTTTATGACAGAATAGGTCAACATAATGTATCGATAC
* * *
2178108 TTGTTACATTTGTGTCGATACTTTTGATCAAGAATTAATGCCCAACGAGGTGCACGCATAAAGTG
130 TTTTTACATTTGTGTCGATACTTTTGGTCAAGAATGAATGCCCAACGAGGTGCACGCATAAAGTG
2178173 TCGATA
195 TCGATA
* *
2178179 CATTTATTGTAAGTATCGATCCCAAACACATCGAAACCGATAATTATATAGTAATAGGTAAATTT
1 CATTTATTGTAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAAGTAATAGGTAAATTT
* *
2178244 ACATTGTAACCGGTAAAAATATATCGGTTTTATGACAGAATAGGTCAACATAATGTATCGATACT
66 ACAATGTAACCAGTAAAAATATATCGGTTTTATGACAGAATAGGTCAACATAATGTATCGATACT
* *
2178309 TTTTACATTTATGTCGATACTTTTGGTCCAGAATGAATGCCCAACGAGGTGCACGCATAAAGTGT
131 TTTTACATTTGTGTCGATACTTTTGGTCAAGAATGAATGCCCAACGAGGTGCACGCATAAAGTGT
2178374 CGATA
196 CGATA
*
2178379 CATTTATTATAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAAGTAATAGGTAAATTT
1 CATTTATTGTAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAAGTAATAGGTAAATTT
* * * * *
2178444 ACAATGTAACCAATAAAAATATAACGGTTTTATGATAGAATAAGTCAACATAATGTATCGATTCT
66 ACAATGTAACCAGTAAAAATATATCGGTTTTATGACAGAATAGGTCAACATAATGTATCGATACT
* *
2178509 TTTTAAATTTGTGTCGATACTTTTGGTCGAGAATGAATGCCCAACGAGGTGCACGCATAAAGTGT
131 TTTTACATTTGTGTCGATACTTTTGGTCAAGAATGAATGCCCAACGAGGTGCACGCATAAAGTGT
*
2178574 CAATA
196 CGATA
* * *
2178579 CATTTATTGTAAGTATCGATTCCAAAAATATCAAAACCGATAATTATAAAGTAATAGGTAAATTT
1 CATTTATTGTAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAAGTAATAGGTAAATTT
* *
2178644 ACAATGTAACCAGTAAAAA-ATTATCGGTTTTATGACAAAATAGGTTAACATAATGTATCGATAC
66 ACAATGTAACCAGTAAAAATA-TATCGGTTTTATGACAGAATAGGTCAACATAATGTATCGATAC
* *
2178708 TTTTTACATTTGTGTCGATACTTTTGGTCCAA-AATGAATACCCAACGAGGTGCACGCATATAGT
130 TTTTTACATTTGTGTCGATACTTTTGGT-CAAGAATGAATGCCCAACGAGGTGCACGCATAAAGT
2178772 GTCGATA
194 GTCGATA
*
2178779 CATATATTGTAAGTATCGAT
1 CATTTATTGTAAGTATCGAT
2178799 ACATAATGAT
Statistics
Matches: 570, Mismatches: 46, Indels: 7
0.91 0.07 0.01
Matches are distributed among these distances:
199 35 0.06
200 532 0.93
201 3 0.01
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (200 bp):
CATTTATTGTAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAAGTAATAGGTAAATTT
ACAATGTAACCAGTAAAAATATATCGGTTTTATGACAGAATAGGTCAACATAATGTATCGATACT
TTTTACATTTGTGTCGATACTTTTGGTCAAGAATGAATGCCCAACGAGGTGCACGCATAAAGTGT
CGATA
Found at i:2181048 original size:23 final size:24
Alignment explanation
Indices: 2181017--2181063 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
2181007 ATCAACTTTA
*
2181017 ATAATGCGCAACCTATTACGTTAT
1 ATAATGCGCAACCTAATACGTTAT
* *
2181041 ATAA-GCGCTACCTAATATGTTAT
1 ATAATGCGCAACCTAATACGTTAT
2181064 TGTGCTTGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (24 bp):
ATAATGCGCAACCTAATACGTTAT
Found at i:2181188 original size:23 final size:23
Alignment explanation
Indices: 2181162--2181212 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
2181152 TAAGTAATTA
** *
2181162 ACCTATTTTATTATATAAGCGCT
1 ACCTATTACATTATATAAGCACT
*
2181185 ACCTATTACGTTATATAAGCACT
1 ACCTATTACATTATATAAGCACT
2181208 ACCTA
1 ACCTA
2181213 ATATGTTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (23 bp):
ACCTATTACATTATATAAGCACT
Found at i:2181220 original size:23 final size:23
Alignment explanation
Indices: 2181172--2181221 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
2181162 ACCTATTTTA
* *
2181172 TTATATAAGCGCTACCTATTACG
1 TTATATAAGCACTACCTAATACG
*
2181195 TTATATAAGCACTACCTAATATG
1 TTATATAAGCACTACCTAATACG
2181218 TTAT
1 TTAT
2181222 TGTGCTTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (23 bp):
TTATATAAGCACTACCTAATACG
Found at i:2181235 original size:158 final size:158
Alignment explanation
Indices: 2181017--2181395 Score: 652
Period size: 158 Copynumber: 2.4 Consensus size: 158
2181007 ATCAACTTTA
*
2181017 ATAATGCGCAACCTATTACGTTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATATTAA
1 ATAA-GCGCTACCTATTACGTTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATATTAA
*
2181082 CAGTAATTAACC-GATTATGTTATCCTTGGTAACATTTTAGGCGTTTACCTAATATGTTGTAAGA
65 CAGTAATTAACCAG-TTATGTTATCCTTAGTAACATTTTAGGCGTTTACCTAATATGTTGTAAGA
2181146 ACAAATTAAGTAATTAACCTATTTTATTAT
129 ACAAATTAAGTAATTAACCTATTTTATTAT
*
2181176 ATAAGCGCTACCTATTACGTTATATAAGCACTACCTAATATGTTATTGTGCTTGATAATATTAAC
1 ATAAGCGCTACCTATTACGTTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATATTAAC
* * * *
2181241 GGTAATTAACCAGTTATGTTCTCCTTAGTAATATTTTAGGCGTTTACCTAATATGTTGTAATAAC
66 AGTAATTAACCAGTTATGTTATCCTTAGTAACATTTTAGGCGTTTACCTAATATGTTGTAAGAAC
*
2181306 AAATTAAGTAATTAACCTATTTTATTGT
131 AAATTAAGTAATTAACCTATTTTATTAT
*
2181334 ATAAGCACTACCTATTACGTTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATATT
1 ATAAGCGCTACCTATTACGTTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATATT
2181396 TCCGGTTAAA
Statistics
Matches: 209, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
158 204 0.98
159 5 0.02
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (158 bp):
ATAAGCGCTACCTATTACGTTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATATTAAC
AGTAATTAACCAGTTATGTTATCCTTAGTAACATTTTAGGCGTTTACCTAATATGTTGTAAGAAC
AAATTAAGTAATTAACCTATTTTATTAT
Found at i:2181359 original size:23 final size:23
Alignment explanation
Indices: 2181333--2181379 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
2181323 TATTTTATTG
*
2181333 TATAAGCACTACCTATTACGTTA
1 TATAAGCACTACCTAATACGTTA
* *
2181356 TATAAGCGCTACCTAATATGTTA
1 TATAAGCACTACCTAATACGTTA
2181379 T
1 T
2181380 TGTGCTTGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (23 bp):
TATAAGCACTACCTAATACGTTA
Found at i:2181671 original size:16 final size:13
Alignment explanation
Indices: 2181651--2181690 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 13
2181641 TTTAAATTCT
2181651 TTTTAATTTAACTC
1 TTTTAATTTAA-TC
2181665 TAATTTAATTTAATC
1 T--TTTAATTTAATC
2181680 TTTTAATTTAA
1 TTTTAATTTAA
2181691 ACATTCTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 3 0.12
16 10 0.42
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (13 bp):
TTTTAATTTAATC
Found at i:2183055 original size:3 final size:3
Alignment explanation
Indices: 2183047--2183124 Score: 52
Period size: 3 Copynumber: 25.7 Consensus size: 3
2183037 ATAATTTTCG
* * *
2183047 TTA TTA TTA TTTA TTA TTA TTA TTA TCA TCA TTA TTAA GTA TTA TT-
1 TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
* * * *
2183093 TTA TCA -TA ATA TTA TTA ATA TATA TTT TTA TT
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TT
2183125 TTCAGATTAC
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
2 3 0.05
3 48 0.81
4 8 0.14
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:2183080 original size:25 final size:24
Alignment explanation
Indices: 2183052--2183099 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
2183042 TTTCGTTATT
* *
2183052 ATTATTTATTATTATTATTATCATC
1 ATTATTAAGTATTATT-TTATCATC
2183077 ATTATTAAGTATTATTTTATCAT
1 ATTATTAAGTATTATTTTATCAT
2183100 AATATTATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.58
Consensus pattern (24 bp):
ATTATTAAGTATTATTTTATCATC
Found at i:2184597 original size:2 final size:2
Alignment explanation
Indices: 2184590--2184629 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
2184580 TTCTCATAGA
2184590 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2184630 TAAGTATTCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2190008 original size:25 final size:25
Alignment explanation
Indices: 2189973--2190024 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
2189963 TTTGGAAAAC
*
2189973 TTCATCTAACATTCTTC-AAAATTAT
1 TTCATCAAACA-TCTTCTAAAATTAT
*
2189998 TTCATCAAACATCTTCTAAAGTTAT
1 TTCATCAAACATCTTCTAAAATTAT
2190023 TT
1 TT
2190025 AATTACTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.35, C:0.19, G:0.02, T:0.44
Consensus pattern (25 bp):
TTCATCAAACATCTTCTAAAATTAT
Found at i:2190047 original size:18 final size:18
Alignment explanation
Indices: 2190026--2190063 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
2190016 AAGTTATTTA
2190026 ATTACTTAAAATTCTTTC
1 ATTACTTAAAATTCTTTC
*
2190044 ATTATTTAAAATTCTTTC
1 ATTACTTAAAATTCTTTC
2190062 AT
1 AT
2190064 AAATCATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.13, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTACTTAAAATTCTTTC
Found at i:2191832 original size:3 final size:3
Alignment explanation
Indices: 2191826--2191894 Score: 99
Period size: 3 Copynumber: 23.7 Consensus size: 3
2191816 CTTCTAATGT
2191826 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TTAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A
*
2191871 TTA TTA TT- TTA TTA ATA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
2191895 TATTTATTTT
Statistics
Matches: 60, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
2 6 0.10
3 51 0.85
4 3 0.05
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:2194207 original size:15 final size:14
Alignment explanation
Indices: 2194184--2194219 Score: 63
Period size: 15 Copynumber: 2.5 Consensus size: 14
2194174 AGCATATCAA
2194184 TTTTTTTAAAATAT
1 TTTTTTTAAAATAT
2194198 TTTTTCTTAAAATAT
1 TTTTT-TTAAAATAT
2194213 TTTTTTT
1 TTTTTTT
2194220 CGACCTATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTTTTAAAATAT
Found at i:2198873 original size:54 final size:54
Alignment explanation
Indices: 2198830--2199546 Score: 1132
Period size: 54 Copynumber: 13.3 Consensus size: 54
2198820 TTTTGTGTTT
* * *
2198830 TGCACACATGGTGCCAAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
* * *
2198884 TGCACACTTAGTGTCGAAATGGTTATTCATCCACATAGGATGAATTCCATGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
**
2198938 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTATGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
* *
2198992 TGCACACTTAGTGCCAAAACAGTTATTCATCCACATAGGATGAATTCCGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
* **
2199046 TGCAC-CTTAGTGTCGAAATAGTTATTCATCCACATAGGATGAATTCCGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
* * *
2199099 TGCACACTTAGTGTCGAAATGGTTATTCATCCACATAAGATGAATTCCGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
* * *
2199153 TGTACACTTAGTGCCGAAACGG-TATTCATCCACATAGGATGAATTTCATGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
* *
2199206 TGCACACTTAGTGTCGAAATGGTTATTCATCCACATAGGATGAATTCCGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
* *
2199260 TGCACACTTAGTGCCGAAATGGTTATTCATCCACATAGGATGAATTCAGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
* *
2199314 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTTCATGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
*
2199368 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTTCGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
* * **
2199422 TGCACACTTAGTACCGAAATGGTTATTCATCCACATAGGATGAATTCTATGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
* *
2199476 TGCACACTTAGTGCCGAAACGGTTATTCATCCTCATATGATGAATTCCGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
2199530 TGCACACTTAGTGCCGA
1 TGCACACTTAGTGCCGA
2199547 TTTGGTAATC
Statistics
Matches: 612, Mismatches: 49, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
53 97 0.16
54 515 0.84
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (54 bp):
TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
Found at i:2200030 original size:95 final size:95
Alignment explanation
Indices: 2199902--2200086 Score: 232
Period size: 95 Copynumber: 1.9 Consensus size: 95
2199892 TACTTCTATA
* * * *
2199902 CTATGGTATCGATACCCCCTTCGGGTATCGATACCAAAAATAGGTTCGATGTTTCCCGGTATCGA
1 CTATGGTATCGATACCCCCTTCCGGTATCGATACCAAAAATAGATTCGATATTTCCCGGTATCAA
2199967 TACCCATA-CTATGGTATCGATACTAGCCTT
66 TACCCATATC-ATGGTATCGATACTAGCCTT
* * **
2199997 CTATGGTA-CTGATA-CCCCTTACCGGTATTGATACCAAAATTAGATTCGATATTTCTTGGTATC
1 CTATGGTATC-GATACCCCCTT-CCGGTATCGATACCAAAAATAGATTCGATATTTCCCGGTATC
* *
2200060 AATACCCTTATCATGGTATCGTTACTA
64 AATACCCATATCATGGTATCGATACTA
2200087 CTTCTTCAGT
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
94 7 0.09
95 69 0.90
96 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (95 bp):
CTATGGTATCGATACCCCCTTCCGGTATCGATACCAAAAATAGATTCGATATTTCCCGGTATCAA
TACCCATATCATGGTATCGATACTAGCCTT
Found at i:2204213 original size:45 final size:45
Alignment explanation
Indices: 2204163--2204353 Score: 135
Period size: 45 Copynumber: 4.3 Consensus size: 45
2204153 GGAGTTACCC
*
2204163 AAAGAACATTTCACTCAGCTTAAACTCGCAAAGGGGAGTCATCTG
1 AAAGAACATTTCACTCAGCTTAAACTCGCAAAGAGGAGTCATCTG
* * * * * *
2204208 AAAGAACATTTCACCCAACTTAAACCCGC-AAGTGGATTCATC-C
1 AAAGAACATTTCACTCAGCTTAAACTCGCAAAGAGGAGTCATCTG
* * *
2204251 AAAGAACATATCAC-CCGACTTAAAC-C-CATGAAGAGAAGTCGAT-TG
1 AAAGAACATTTCACTCAG-CTTAAACTCGCA--AAGAGGAGTC-ATCTG
* ** * *
2204296 AAAGAACATTTCACAT-GGCTTAAACTCAAAAAGAGGAGTCGTCCG
1 AAAGAACATTTCAC-TCAGCTTAAACTCGCAAAGAGGAGTCATCTG
* *
2204341 TAAGAATATTTCA
1 AAAGAACATTTCA
2204354 TCCGCGAAGG
Statistics
Matches: 114, Mismatches: 21, Indels: 22
0.73 0.13 0.14
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 20 0.18
44 19 0.17
45 69 0.61
46 2 0.02
47 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.17, T:0.21
Consensus pattern (45 bp):
AAAGAACATTTCACTCAGCTTAAACTCGCAAAGAGGAGTCATCTG
Found at i:2204266 original size:43 final size:44
Alignment explanation
Indices: 2204137--2204277 Score: 158
Period size: 44 Copynumber: 3.2 Consensus size: 44
2204127 CTTCACATGG
** * * * *
2204137 CTTAAACCCGTGAAGGGGAGTTACCCAAAGAACATTTCACTCAG
1 CTTAAACCCGCAAAGGGGAGTCATCCAAAGAACATTTCACCCAA
* *
2204181 CTTAAACTCGCAAAGGGGAGTCATCTGAAAGAACATTTCACCCAA
1 CTTAAACCCGCAAAGGGGAGTCATC-CAAAGAACATTTCACCCAA
* * * *
2204226 CTTAAACCCGC-AAGTGGATTCATCCAAAGAACATATCACCCGA
1 CTTAAACCCGCAAAGGGGAGTCATCCAAAGAACATTTCACCCAA
2204269 CTTAAACCC
1 CTTAAACCC
2204278 ATGAAGAGAA
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
43 25 0.30
44 31 0.38
45 26 0.32
ACGTcount: A:0.36, C:0.28, G:0.16, T:0.20
Consensus pattern (44 bp):
CTTAAACCCGCAAAGGGGAGTCATCCAAAGAACATTTCACCCAA
Found at i:2204318 original size:88 final size:89
Alignment explanation
Indices: 2204119--2204320 Score: 200
Period size: 88 Copynumber: 2.3 Consensus size: 89
2204109 ATCTGGCTTG
* * * *
2204119 AAGAACCACTTCACATGGCTTAAACCCGTGAAGGGGAGTTACCCAAAGAACATTTCACTCAGCTT
1 AAGAA-CATTTCACATGGCTTAAACCCGTCAAGGGGAGTTACCCAAAGAACATATCACCCAGCTT
* *
2204184 AAACTCGCAAAGGGGAGTCATCTGA
65 AAACTCGCAAAGAGAAGTCATCTGA
**** * *
2204209 AAGAACATTTCACCCAACTTAAACCCG-CAAGTGGA-TTCATCCAAAGAACATATCACCC-GACT
1 AAGAACATTTCACATGGCTTAAACCCGTCAAGGGGAGTT-ACCCAAAGAACATATCACCCAG-CT
2204271 TAAAC-C-CATGAAGAGAAGTCGAT-TGA
64 TAAACTCGCA--AAGAGAAGTC-ATCTGA
2204297 AAGAACATTTCACATGGCTTAAAC
1 AAGAACATTTCACATGGCTTAAAC
2204321 TCAAAAAGAG
Statistics
Matches: 91, Mismatches: 16, Indels: 12
0.76 0.13 0.10
Matches are distributed among these distances:
86 2 0.02
87 4 0.04
88 61 0.67
89 19 0.21
90 5 0.05
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.20
Consensus pattern (89 bp):
AAGAACATTTCACATGGCTTAAACCCGTCAAGGGGAGTTACCCAAAGAACATATCACCCAGCTTA
AACTCGCAAAGAGAAGTCATCTGA
Found at i:2205130 original size:21 final size:21
Alignment explanation
Indices: 2205104--2205143 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
2205094 GAAATTTTAA
2205104 TTTATTACAATATTT-TAATAT
1 TTTATT-CAATATTTATAATAT
*
2205125 TTTATTGAATATTTATAAT
1 TTTATTCAATATTTATAAT
2205144 TAAATTCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (21 bp):
TTTATTCAATATTTATAATAT
Found at i:2207061 original size:26 final size:26
Alignment explanation
Indices: 2207031--2207085 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
2207021 CGAAGAAACA
*
2207031 AAAAATAATAATTATAATTATTAGATT
1 AAAAAT-ATAATTATAATCATTAGATT
* *
2207058 AAAAATTTAATTATAGTCATTAGATT
1 AAAAATATAATTATAATCATTAGATT
2207084 AA
1 AA
2207086 TTTTATTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (26 bp):
AAAAATATAATTATAATCATTAGATT
Found at i:2211341 original size:26 final size:27
Alignment explanation
Indices: 2211312--2211376 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
2211302 AGAACATGAT
*
2211312 TAAATATATTCATTAGATTAGAATA-A
1 TAAATATATTCATTAGAATAGAATATA
* ** * *
2211338 TAAATTTATTTTTTATAATATAATATA
1 TAAATATATTCATTAGAATAGAATATA
2211365 TAAATATATTCA
1 TAAATATATTCA
2211377 AAAATTATAA
Statistics
Matches: 29, Mismatches: 9, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
26 19 0.66
27 10 0.34
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (27 bp):
TAAATATATTCATTAGAATAGAATATA
Found at i:2213338 original size:55 final size:55
Alignment explanation
Indices: 2213174--2213338 Score: 269
Period size: 55 Copynumber: 3.0 Consensus size: 55
2213164 CCCACTACCA
* *
2213174 ATACAGAAATTCATATACTTATTATGAATTTCTTAGTTTTGCACACACAGAT-CCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG-TGCCC
*
2213229 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAATGCCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCC
* *
2213284 ATACGGAAATTCATACACTTATTATGAATTTCTTAGGTTTGCACACACAGTGCCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCC
2213339 TTTTTGTAAT
Statistics
Matches: 103, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
54 1 0.01
55 102 0.99
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.35
Consensus pattern (55 bp):
ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCC
Found at i:2215686 original size:237 final size:237
Alignment explanation
Indices: 2215271--2215746 Score: 880
Period size: 237 Copynumber: 2.0 Consensus size: 237
2215261 GGCCATCTTA
* * *
2215271 ATAATGGATTGATAACTATTATTATAAACAAATTCTGCTAAAGGCAAATATCTTTCCCATGTTCC
1 ATAATGGATTGATAACTATTATTATAAACAAATTCTACTAAAGGCAAATACCTTTCCCATATTCC
*
2215336 TTTAAACTCAATCACATATGTAGTTAGCATATCCTCTAGTATCTGGATAGATCGTTCTGACTGCC
66 TTTAAACTAAATCACATATGTAGTTAGCATATCCTCTAGTATCTGGATAGATCGTTCTGACTGCC
2215401 CATCCTTTTACGGATGAATAGCTGTGCTGAAATTCAATTGAGTACACAATACCTCATGCAAAGAC
131 CATCCTTTTACGGATGAATAGCTGTGCTGAAATTCAATTGAGTACACAATACCTCATGCAAAGAC
*
2215466 TTCCAGAATCTTGAAGTAAACCTTGGGTCTCGATCGGATGCT
196 TTCCAGAATCTTGAAGTAAACCATGGGTCTCGATCGGATGCT
2215508 ATAATGGATTGATAACTATTATTATAAACAAATTCTACTAAAGGCAAATACCTTTCCCATATTCC
1 ATAATGGATTGATAACTATTATTATAAACAAATTCTACTAAAGGCAAATACCTTTCCCATATTCC
2215573 TTTAAACTAAATCACATATGTAGTTAGCATATCCTCTAGTATCTGGATAGATCGTTCTGACTGCC
66 TTTAAACTAAATCACATATGTAGTTAGCATATCCTCTAGTATCTGGATAGATCGTTCTGACTGCC
* * *
2215638 CATCCTTTTACGGATGAATAGTTGTGCTGAAGTTCAATTGAGTACACAATACCTCATGTAAAGAC
131 CATCCTTTTACGGATGAATAGCTGTGCTGAAATTCAATTGAGTACACAATACCTCATGCAAAGAC
2215703 TTCCAGAATCTTGAAGTAAACCATGGGTCTCGATCGGATGCT
196 TTCCAGAATCTTGAAGTAAACCATGGGTCTCGATCGGATGCT
2215745 AT
1 AT
2215747 TGATATAGGC
Statistics
Matches: 231, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
237 231 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (237 bp):
ATAATGGATTGATAACTATTATTATAAACAAATTCTACTAAAGGCAAATACCTTTCCCATATTCC
TTTAAACTAAATCACATATGTAGTTAGCATATCCTCTAGTATCTGGATAGATCGTTCTGACTGCC
CATCCTTTTACGGATGAATAGCTGTGCTGAAATTCAATTGAGTACACAATACCTCATGCAAAGAC
TTCCAGAATCTTGAAGTAAACCATGGGTCTCGATCGGATGCT
Found at i:2220469 original size:55 final size:55
Alignment explanation
Indices: 2220185--2220459 Score: 401
Period size: 55 Copynumber: 5.0 Consensus size: 55
2220175 CCCACTACCA
* * * *
2220185 ATACAGAAATTCATATACTTATTATGAATTTCTTAGTTTTGCACACACAATGCCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTACACACACAGTGCCC
* **
2220240 ATACGGTAATTCATAAACTTATTATGAATTTCTTAGTTTTGGACACACAGTGCCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTACACACACAGTGCCC
* *
2220295 ATAC-GAACATTCATAAACATATTATGAATTTCTTAGTTTTACACACATAGTGCCC
1 ATACGGAA-ATTCATAAACTTATTATGAATTTCTTAGTTTTACACACACAGTGCCC
* * *
2220350 ATACGGAAATTCATAAATTTATTATGAATTTCTTAGTTTTTCACACA-TGATGCCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTACACACACAG-TGCCC
*
2220405 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTACCCACACAGTGCCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTACACACACAGTGCCC
2220460 TTTTGGAAAT
Statistics
Matches: 198, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
54 3 0.02
55 191 0.96
56 4 0.02
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.36
Consensus pattern (55 bp):
ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTACACACACAGTGCCC
Found at i:2220821 original size:22 final size:21
Alignment explanation
Indices: 2220780--2220850 Score: 94
Period size: 22 Copynumber: 3.5 Consensus size: 21
2220770 TGTCTTAATA
*
2220780 GTATCGATAC-CTCTACTATG
1 GTATCGATACTCTATACTATG
2220800 GTATCGATACTTCTATACTATG
1 GTATCGATAC-TCTATACTATG
*
2220822 GTATCGATACTCTAT--TACG
1 GTATCGATACTCTATACTATG
2220841 GTATCGATAC
1 GTATCGATAC
2220851 CATTTCTGCA
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
19 13 0.28
20 10 0.21
21 5 0.11
22 19 0.40
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (21 bp):
GTATCGATACTCTATACTATG
Found at i:2220845 original size:19 final size:19
Alignment explanation
Indices: 2220780--2220850 Score: 88
Period size: 19 Copynumber: 3.5 Consensus size: 19
2220770 TGTCTTAATA
*
2220780 GTATCGATACCTCTACTATG
1 GTATCGATA-CTCTATTATG
2220800 GTATCGATACTTCTATACTATG
1 GTATCGATAC-TCTAT--TATG
*
2220822 GTATCGATACTCTATTACG
1 GTATCGATACTCTATTATG
2220841 GTATCGATAC
1 GTATCGATAC
2220851 CATTTCTGCA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
19 14 0.30
20 13 0.28
21 5 0.11
22 14 0.30
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (19 bp):
GTATCGATACTCTATTATG
Found at i:2224440 original size:283 final size:282
Alignment explanation
Indices: 2223991--2224582 Score: 749
Period size: 283 Copynumber: 2.1 Consensus size: 282
2223981 TGTTTGTTTG
* * *
2223991 ATTTAGTCCTTAAAATTATATTATTTATCTGAAATTGGCCATATTTATATTTTTGTAATTTACTC
1 ATTTAGTCCTTAAAATTATATT-TTTATCTAAAATTAGCCATATTTATATTTTTGTAATGTACTC
* * * *
2224056 CAAACCCTATAAACCACATCATAAACTTCATTTCAAACACTATAAATTATATTATAGTCTCCAAA
65 CAAACCCTATAAACCAAATCACAAACTTCATTTCAAACACTATAAATTATATAATAATCTCCAAA
*
2224121 CCCTATAAATTTTTGTTCACACACTTATTAAATGGATACAATCTAATCAATTTTTATATTAACTT
130 CCCTATAAACTTTTGTTCACACACTTATTAAATGGATACAATCTAATCAATTTTTATATTAACTT
** * *
2224186 TAGCTTCACATTTTACAATTGTTTCGTTTTGATCCCTGGGTGTTGTTTAATTTATTTAAATTTTA
195 TAGCTTCACATTTTACAATTGTTTCAATTTGATCCCTAGATGTTGTTTAATTTATTTAAATTTTA
* *
2224251 GTTTGCAATTTCACATCTGTTCA
260 GTTTACAATTTCACATCTATTCA
* * *
2224274 ATTTAGTCCTTAAAATTATATTTTTATCTAAAATTAGCCATAATTATTTCTATTTTGTTATGTAC
1 ATTTAGTCCTTAAAATTATATTTTTATCTAAAATTAGCCAT-ATT-TATAT-TTTTGTAATGTAC
* * * * * *
2224339 TCTAAA-CTTATAAATCAAATCACAACCTTCATTTCAAACTCTATAAATTATATAATAATCTCCT
63 TCCAAACCCTATAAACCAAATCACAAACTTCATTTCAAACACTATAAATTATATAATAATCTCCA
* * * * * *
2224403 AACTCTATAAACTTTTGTTCACTA-ACTT-TTTAATGGATGCAATTTATTCCATTTTTATATTAA
128 AACCCTATAAACTTTTGTTCAC-ACACTTATTAAATGGATACAATCTAATCAATTTTTATATTAA
* * * *
2224466 TTTTAGCTTCAGATTTTACAATTGTTTTAATTTGATCCCTATATGTTGTTTAATTTATTTAAATT
192 CTTTAGCTTCACATTTTACAATTGTTTCAATTTGATCCCTAGATGTTGTTTAATTTATTTAAATT
* * ** *
2224531 TTATTTTATAATTTCATGTTTATTCA
257 TTAGTTTACAATTTCACATCTATTCA
* * *
2224557 ATTTATTTCTTACAATTATATTTTTA
1 ATTTAGTCCTTAAAATTATATTTTTA
2224583 ACGAAATTGA
Statistics
Matches: 264, Mismatches: 41, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
282 17 0.06
283 154 0.58
284 76 0.29
285 17 0.06
ACGTcount: A:0.32, C:0.15, G:0.06, T:0.47
Consensus pattern (282 bp):
ATTTAGTCCTTAAAATTATATTTTTATCTAAAATTAGCCATATTTATATTTTTGTAATGTACTCC
AAACCCTATAAACCAAATCACAAACTTCATTTCAAACACTATAAATTATATAATAATCTCCAAAC
CCTATAAACTTTTGTTCACACACTTATTAAATGGATACAATCTAATCAATTTTTATATTAACTTT
AGCTTCACATTTTACAATTGTTTCAATTTGATCCCTAGATGTTGTTTAATTTATTTAAATTTTAG
TTTACAATTTCACATCTATTCA
Found at i:2233138 original size:14 final size:15
Alignment explanation
Indices: 2233110--2233142 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
2233100 ATGAAGTCTC
2233110 ATATCTCATTATCAT
1 ATATCTCATTATCAT
2233125 ATATCTCA-TATCAT
1 ATATCTCATTATCAT
2233139 ATAT
1 ATAT
2233143 TCTTGTATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.45
Consensus pattern (15 bp):
ATATCTCATTATCAT
Found at i:2237940 original size:91 final size:91
Alignment explanation
Indices: 2237770--2237940 Score: 234
Period size: 91 Copynumber: 1.9 Consensus size: 91
2237760 CCATGATAAA
* * * * *
2237770 GGTATCGATACCAAGCAACATCGAATCTAATTTTGGTACCGATACCGGGAGAGGGTATCGGTACC
1 GGTAACGATACCAAGCAACATCAAACCTAATTTTGGCACCGATACCGGAAGAGGGTATCGGTACC
* *
2237835 ATAGTATGGTAGTATCGAGTGGTAAG
66 ATAGTATAGAAGTATCGAGTGGTAAG
* * * * *
2237861 GGTAACGATACCAGGCAATATCAAACCTAATTTTGGCATCGATATCGGAAGGGGGTATCGGTACC
1 GGTAACGATACCAAGCAACATCAAACCTAATTTTGGCACCGATACCGGAAGAGGGTATCGGTACC
2237926 ATAGTATAGAAGTAT
66 ATAGTATAGAAGTAT
2237941 TGGTACCAGG
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
91 68 1.00
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (91 bp):
GGTAACGATACCAAGCAACATCAAACCTAATTTTGGCACCGATACCGGAAGAGGGTATCGGTACC
ATAGTATAGAAGTATCGAGTGGTAAG
Found at i:2238511 original size:54 final size:54
Alignment explanation
Indices: 2238302--2238994 Score: 956
Period size: 54 Copynumber: 12.8 Consensus size: 54
2238292 GTACTATATA
* * * *
2238302 CACTTTGTGTGCATATCCACGGAATTCATCATGGGTTGGTGAATCACCGTACAGG
1 CACTATGTGTGCA-ACCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGG
* * * * * * *
2238357 CACTTTATGTACATATCCACGAAATTCATCATGGGTTGATGAATCACCGTACATG
1 CACTATGTGTGCA-ACCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGG
* * * *
2238412 CACTTTGTGTGCAAACCCACGTAATTCATCATGAGTTGATAAATCATCGTACAGG
1 CACTATGTGTGC-AACCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGG
* * *** *
2238467 CATTATATGTGCAACCCAAAAAATTCATCATGAGATGATGAATCACCGTACAGG
1 CACTATGTGTGCAACCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGG
* * *
2238521 CACTATGTGTGCAATCCACGGAATTCATCATGAGTTGATGAATCATCGTATAGG
1 CACTATGTGTGCAACCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGG
* *
2238575 CACTATGTGTGCAACTCACGGAATTCATCATGAGTTGATAAATCACCGTACAGG
1 CACTATGTGTGCAACCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGG
** *
2238629 CACTATGTGTGCAACCCACATAATTCATCATGAGTTAATGAATCACCGTACAGG
1 CACTATGTGTGCAACCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGG
* ** * *
2238683 CACTATGTGTGAAACCCACATAATTCATCATGAGTTGATGAATCATCGTATAGG
1 CACTATGTGTGCAACCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGG
* *
2238737 CACTATGTGTGCAACCCACGGAATTCATCATGAGTTGATGAATCATCGTACATG
1 CACTATGTGTGCAACCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGG
* *
2238791 CACTATGTGTGCAACCCACGAAATTCATCATGAGTTGATGAATCACCGTACAAG
1 CACTATGTGTGCAACCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGG
*
2238845 CACTATGTGTGCAACCCACGGAATTCATCATGAGTTGATGAATCACCGTACAAG
1 CACTATGTGTGCAACCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGG
* *
2238899 CAATATGTGTGCAACCCACGGAATTCATCATGAGTTGATGAATCACCGTACATG
1 CACTATGTGTGCAACCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGG
* * *
2238953 TACTATATGTGCAACCCACAGAATTCATCATGA-TTGATGAAT
1 CACTATGTGTGCAACCCACGGAATTCATCATGAGTTGATGAAT
2238995 TTTTGTATAG
Statistics
Matches: 577, Mismatches: 60, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
53 9 0.02
54 463 0.80
55 104 0.18
56 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (54 bp):
CACTATGTGTGCAACCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGG
Found at i:2239682 original size:21 final size:21
Alignment explanation
Indices: 2239656--2239696 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
2239646 CCGCGTAGAA
2239656 ATGTCCCGAAGGACCACATAG
1 ATGTCCCGAAGGACCACATAG
2239677 ATGTCCCGAAGGACCACATA
1 ATGTCCCGAAGGACCACATA
2239697 TAACACATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.29, G:0.22, T:0.15
Consensus pattern (21 bp):
ATGTCCCGAAGGACCACATAG
Found at i:2240011 original size:14 final size:15
Alignment explanation
Indices: 2239983--2240015 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
2239973 ATGGAGTCTC
2239983 ATATCTCATTATCAT
1 ATATCTCATTATCAT
2239998 ATATCTCA-TATCAT
1 ATATCTCATTATCAT
2240012 ATAT
1 ATAT
2240016 TCTTGTATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.45
Consensus pattern (15 bp):
ATATCTCATTATCAT
Found at i:2244593 original size:21 final size:20
Alignment explanation
Indices: 2244561--2244599 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
2244551 ATTAAAATCT
* *
2244561 TATTTTTGATAATCTTTTAA
1 TATTTTTAATAATATTTTAA
2244581 TATTTTTAAATAATATTTT
1 TATTTTT-AATAATATTTT
2244600 GTAATCCGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (20 bp):
TATTTTTAATAATATTTTAA
Found at i:2245244 original size:21 final size:21
Alignment explanation
Indices: 2245218--2245258 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
2245208 TCGAAAATAT
*
2245218 TAAAAATATTAATATTTTAGG
1 TAAAAATAATAATATTTTAGG
2245239 TAAAAATAATAATATTTTAG
1 TAAAAATAATAATATTTTAG
2245259 ATAATTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.41
Consensus pattern (21 bp):
TAAAAATAATAATATTTTAGG
Found at i:2254435 original size:17 final size:17
Alignment explanation
Indices: 2254400--2254432 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
2254390 TTATTTTACT
*
2254400 TTTATATTATTATTCAA
1 TTTATATTATTATACAA
2254417 TTTATATTA-TATACAA
1 TTTATATTATTATACAA
2254433 ATTAAATCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTATATTATTATACAA
Found at i:2254844 original size:19 final size:19
Alignment explanation
Indices: 2254802--2254846 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
2254792 GAATCGGCTA
2254802 AGAACCGACAAAACCGAGG
1 AGAACCGACAAAACCGAGG
* *
2254821 TGAACCGGCAAAACCG-GCG
1 AGAACCGACAAAACCGAG-G
2254840 AGAACCG
1 AGAACCG
2254847 CCGGTTCTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 1 0.05
19 21 0.95
ACGTcount: A:0.40, C:0.29, G:0.29, T:0.02
Consensus pattern (19 bp):
AGAACCGACAAAACCGAGG
Found at i:2256486 original size:36 final size:36
Alignment explanation
Indices: 2256245--2256474 Score: 243
Period size: 36 Copynumber: 6.4 Consensus size: 36
2256235 GCTTAGCGTC
*
2256245 CAACCTTCTTCTTC-TGTATTGCCATTCGTTGCTGGT
1 CAACATTCTTCTTCGT-TATTGCCATTCGTTGCTGGT
*
2256281 CAACAATCTTCTTCGTTATTGCCATTCGTTGCTGGT
1 CAACATTCTTCTTCGTTATTGCCATTCGTTGCTGGT
* *
2256317 CAACAATCTTCTTCGTTATTTCCATTCGTTGCTGGT
1 CAACATTCTTCTTCGTTATTGCCATTCGTTGCTGGT
* **
2256353 CAACAATCTTCTTCGTTATTGCCATTCGTCCCT-GT
1 CAACATTCTTCTTCGTTATTGCCATTCGTTGCTGGT
** * * *
2256388 GCAGGATTCTTCTTCATTATTGTCATTCGTTCCTGAG-
1 -CAACATTCTTCTTCGTTATTGCCATTCGTTGCTG-GT
* * * *
2256425 CAAGATTCTTCTT-GTTTTTGGCCATTCTTTGCTGTT
1 CAACATTCTTCTTCGTTATT-GCCATTCGTTGCTGGT
*
2256461 CAAGATTCTTCTTC
1 CAACATTCTTCTTC
2256475 TTTACGGCCA
Statistics
Matches: 168, Mismatches: 19, Indels: 13
0.84 0.09 0.06
Matches are distributed among these distances:
35 6 0.04
36 160 0.95
37 1 0.01
38 1 0.01
ACGTcount: A:0.15, C:0.25, G:0.15, T:0.44
Consensus pattern (36 bp):
CAACATTCTTCTTCGTTATTGCCATTCGTTGCTGGT
Found at i:2257755 original size:34 final size:34
Alignment explanation
Indices: 2257711--2257780 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
2257701 GATGAATATA
*
2257711 TTTTACTTTTTACGGTTAATCTCAATCATTTATT
1 TTTTAATTTTTACGGTTAATCTCAATCATTTATT
* *
2257745 TTTTAATTTTTACTGTTAATTTCAATCATTTATT
1 TTTTAATTTTTACGGTTAATCTCAATCATTTATT
2257779 TT
1 TT
2257781 CATTCATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.24, C:0.11, G:0.04, T:0.60
Consensus pattern (34 bp):
TTTTAATTTTTACGGTTAATCTCAATCATTTATT
Found at i:2271245 original size:2 final size:2
Alignment explanation
Indices: 2271238--2271264 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2271228 AACCTCATAC
2271238 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
2271265 ATAAGATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2271762 original size:21 final size:20
Alignment explanation
Indices: 2271721--2271767 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
2271711 CTGGAAAAAA
*
2271721 ATATGAGAAATGATGGGAAT
1 ATATGAGAAATGAAGGGAAT
2271741 ATATGAGAAAAT-AAGGGAA-
1 ATATGAG-AAATGAAGGGAAT
2271760 ATATGAGA
1 ATATGAGA
2271768 TTGATCGGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 1 0.04
19 7 0.28
20 13 0.52
21 4 0.16
ACGTcount: A:0.51, C:0.00, G:0.28, T:0.21
Consensus pattern (20 bp):
ATATGAGAAATGAAGGGAAT
Found at i:2281666 original size:23 final size:23
Alignment explanation
Indices: 2281640--2281687 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
2281630 ATAAAGTACA
*
2281640 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
2281663 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
2281686 AT
1 AT
2281688 TTACCTATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:2282128 original size:21 final size:21
Alignment explanation
Indices: 2282098--2282170 Score: 58
Period size: 23 Copynumber: 3.3 Consensus size: 21
2282088 GATAGATACT
* *
2282098 TTACAATATAAGTACTACCTA
1 TTACATTATAAGAACTACCTA
2282119 TTACATTATATA-AACGCTACCTA
1 TTACATTATA-AGAA--CTACCTA
**
2282142 TTACATTATATAAGCGCTACCTA
1 TTACA-T-TATAAGAACTACCTA
2282165 TTACAT
1 TTACAT
2282171 CATATTTTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
21 10 0.24
22 2 0.05
23 24 0.57
24 2 0.05
25 4 0.10
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (21 bp):
TTACATTATAAGAACTACCTA
Found at i:2282138 original size:23 final size:23
Alignment explanation
Indices: 2282112--2282175 Score: 110
Period size: 23 Copynumber: 2.8 Consensus size: 23
2282102 AATATAAGTA
2282112 CTACCTATTACATTATATAAACG
1 CTACCTATTACATTATATAAACG
*
2282135 CTACCTATTACATTATATAAGCG
1 CTACCTATTACATTATATAAACG
*
2282158 CTACCTATTACATCATAT
1 CTACCTATTACATTATAT
2282176 TTTTACCTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (23 bp):
CTACCTATTACATTATATAAACG
Found at i:2282493 original size:430 final size:430
Alignment explanation
Indices: 2281754--2300233 Score: 33310
Period size: 430 Copynumber: 43.4 Consensus size: 430
2281744 TATTACACTA
2281754 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2281819 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
*
2281884 ATTTGCACAAAAAATTATTTGATT-TTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
2281948 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
2282013 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTG-AAAAAGTATGGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
** *
2282077 TTTATAAAAAGGATAGATACTTTACAATATAAGTACTACCTATTACATTATATAAACGCTACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
2282142 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
2282183 TATTATATTAAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
2282248 TTATGTTACAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
2282313 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
2282378 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
*
2282443 CTTAAAACTCACTCAAAAGATAATCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
2282508 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACA-T-TATAAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
2282571 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2282612 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
2282677 TTATGTTTTAATTTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTT
66 TTATGTTTCAA--TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTT
2282742 CATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATT
129 CATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATT
2282807 TAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATA
194 TAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATA
*
2282872 TCTTAAAACTCACTCAAAGGATAACCTTAAATTAATGTTTTCCACAGTG-AAAAAGTATGGACAC
259 TCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAC
2282936 TTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCT
324 TTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCT
2283001 ATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
389 ATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2283043 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2283108 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
2283173 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
2283238 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
2283303 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
2283368 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
*
2283433 TACATTATATAAGCGCTACCTATTACATCATATGTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2283473 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2283538 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
2283603 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
*
2283668 ATAATAATACAATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
196 ATAATAATA-TATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
*
2283733 CTTAAAACTCACTCAAAAGATAATCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
2283798 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
2283863 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2283904 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
2283969 TTATGTTTTAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
2284034 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
2284099 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
*
2284164 CTTAAAACTCACTCAAAGGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
2284229 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
2284294 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2284335 TATTATATTGAAAGTGTCCATAC-TTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2284399 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
*
2284464 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATTTTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
2284529 ATAATAATATATATCGTAACGT-AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
*
2284593 TTAAAGCTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
2284658 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
2284723 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
* *
2284763 TATTATATTGAAAGTGTCAATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGCAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2284828 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
** *
2284893 ATTTGCACAAAATTTTTTTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
*
2284958 AATAATAATACAATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATA
195 AATAATAATA-TATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATA
2285023 TCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAC
259 TCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAC
* *
2285088 TTTTATAAAAAGGATAAATACTTTACAATATAACAACTACCTATTACATTATATAAACGATACCT
324 TTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCT
*
2285153 ATTACATTATATAAGCGCTACCTATTACATCATATGTTTACC
389 ATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2285195 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
2285260 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCC
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
2285325 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
* *
2285390 ATAATAATATATATCGTAATGTAAAAAATAAATCATTAGACGCATATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
*
2285455 TTAAAACTTACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
2285520 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
*
2285585 TACATTATATAAGCGCTACCTATTACATCATATGTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
2285625 TATTATA-TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGCAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
* *
2285689 TTATGTTTTAAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTCATAATTTC
66 TTATG-TTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
** *
2285754 ATTTGCACAAAATTTTTTTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
2285819 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
2285884 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
*
2285949 TTTATAAAAAGGATAAATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
*
2286014 TTACATTATATAAGCGCTACCTATTACATCATATGTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
* *
2286055 TATTATATTGAAAGTGTCAATACTTTTTATAAAAAGGATCAATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
2286120 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCC
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
2286185 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
*
2286250 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCATATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
*
2286315 TTAAAACTTACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
*
2286380 TTATAAAAAGGATAGATACTTTACAATATAACAACTACCTATTACATTATATAAACGATACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
2286445 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2286485 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2286550 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
*
2286615 TTTGCAAAAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
131 TTTGC-ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
2286680 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
2286745 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
2286810 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
2286875 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
2286916 TATTATATTGAAAGTGTCCAAACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2286981 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
* *
2287046 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTTTAAAATTTTATTTAGAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
2287111 AATAATAATATATATCGTAACGT-AAAAA-AAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
2287174 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
2287239 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
2287304 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2287345 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
2287410 TTATGTTTCAATTTTTTTTAATAGTTTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
*
2287475 ATTTGCACAAAAAATTATTTCATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
2287540 AATAATAATATATATCGTAACGT-AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
2287604 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
2287669 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
2287734 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
* *
2287775 TATTATACTGAATGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2287840 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
* *
2287905 AGTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAAAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
2287970 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
* *
2288035 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGAACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
2288100 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
2288165 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2288206 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAG-TATGTAA-
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2288269 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
*
2288334 TTTTCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
2288399 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
* *
2288464 TTAAAACTCACTCAAAGGATAACTTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
2288529 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGA-ACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
*
2288593 TACA-T-TATAAGCGCTATCTATTACATCATATTTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
2288631 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTCTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2288696 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
2288761 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
2288826 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
2288891 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
2288956 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
*
2289021 TACATTATATAAGCGCTACCTATTACATCATATGTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
2289061 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATATTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
2289126 TTATGTATT-AATTTTTTTAATAGTGTTTCATGTTTTCCACTTACAATATTAATTTAATAATTTC
66 TTATGT-TTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
2289190 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTAT-AAATATTATTTAGAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
*
2289254 AATAAT-A-ATATATCGTAACGT-AAAAATAAATCATTAGACGCATATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
*
2289316 CTTAAAACTTACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
2289381 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
*
2289446 TTACATTATATAAGCGCTACCTATTACATCATATGTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
2289487 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGCAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
* *
2289552 TTATGTTTTAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTCATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
** *
2289617 ATTTGCACAAAATTTTTTTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
2289682 AATAATAATACTATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATA
195 AATAATAATA-TATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATA
2289747 TCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAC
259 TCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAC
*
2289812 TTTTATAAAAAGGATAAATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCT
324 TTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCT
*
2289877 ATTACATTATATAAGCGCTACCTATTACATCATA-TGTTACC
389 ATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
* *
2289918 TATTATA-TGAAAGTGTCAATACTTTTTATAAAAAGGATCAATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
2289982 TTATGTTTCAA-TTTTTTAATAGTG-TTCATGTTTTCCACCTACAATA-TAATTTAATAATTTCC
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
2290044 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
*
2290109 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCATATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
*
2290174 TTAAAACTTACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
*
2290239 TTATAAAAAGGATAGATACTTTACAATATAACAACTACCTATTACATTATATAAACGATACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
2290304 TACATTATATAAGCGCTA-CTATTACATCATATTTTTA-C
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2290342 TATTATA-TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2290406 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTT-CACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
* *
2290470 TTTGCAAAAAAAAATATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
2290535 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
2290600 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
2290665 TTAT-AAAAGGATAGATACTTTACAATATAACCACTACCTA-TACATTATATAAACGATACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
2290728 TACATTATATAAGCGCTACCTATTACATCATA-TTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2290767 TATTATA-TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2290831 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
* * *
2290896 TTTGCACAAAAAATTATTTGATTGTTTTTATATTTT-TAAAATTTTATTAAATTTTATTTATTTT
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAA---TATT--A-TTTA--GA--AT
2290960 TAATTTAATTTTTAATTTAATAATATATATCGTAACGT-AAAAA-AAATCATTAGACGCCTATAA
186 T--TTTAA--TTTAA--TAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAA
2291023 TTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAA
245 TTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAA
2291088 AAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTA
310 AAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTA
2291153 TATAAACGATACCTATTACATTATATAAGCGCTACCTATTACATCATA-TTTTACC
375 TATAAACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2291208 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAG-TATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
2291272 TTATGTTTCAATTTTTTTAATAGTTTTTCATG-TTTCCACCTACAAT-TTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
*
2291335 TTTGCACAAAAAATTATTTCATTG-TTTGATATTTTATAAAATA-TATTTAGAATTTTTAATTT-
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
2291397 ATAATAATATATATCGTAACGT-AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
*
2291461 TTAAAAATCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
2291526 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
2291591 TACATTATATAAGCGCTACCTATTACATCATA-TTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
2291630 TATTATACTGAAATGTGTCCCATACTTTTTATAAAAAGGATCGATACTTC-TTTAAAGTTATGTA
1 TATTATATTGAAA-GTGT-CCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTA
2291694 ATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATT
64 ATTTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATT
* *
2291759 TCAGTTGCACAAAAAA-TA-TTGATTG-TTTGATATTTTAT-AAATATTATTTAAAATTTTTAAT
128 TCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAAT
2291820 TTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATT-AT
193 TTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAAT
2291884 ATCTT-AAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACA
258 ATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACA
*
2291948 C-TTTATAAAAAGGATAAATACTTTACAATATAACCACTACCTATTACATTATATAAACGATA-C
323 CTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACC
*
2292011 TATTACATTATATAAGCGCTACCTATTACATCATATGTTTACC
388 TATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
* *
2292054 TATTATA-TGAAAGTGTCAATACTTTTTAT-AAAAGGATCAATACTTC-TTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
2292116 TTATGTTTCAATTTTTTTAATAGTGTTTCATG-TTTCCACCTACAATATTAATTTAATAATTTCC
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
2292180 TTTGCACAAAAAATTA-TTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
* *
2292244 AT-CTAATATATATCGTAACGT-AAAAATAAATCATTAGACGCATATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
*
2292307 TT-AAACTTACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
*
2292371 TTATAAAAAGGATAGATACTTTACAATATAACAACTACCTATTACATTATATAAACGATACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
2292436 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2292476 TA-TATATTGAAAGTGTCCATAC-TTTTATAAAAAGGATCGATACTTC-TTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2292538 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
*
2292603 TTTGCAAAAAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATT
131 TTTGC--ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATT
2292668 TAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATA
194 TAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATA
2292733 TCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAC
259 TCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAC
2292798 TTTTATAAAAAGGATAGATAC-TTACAATATAACCACTACCTATTACATTATATAAACGATACCT
324 TTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCT
2292862 ATTACA-T-TATAAGCGCTACCTATTACATCATATTTTTACC
389 ATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2292902 TATTATATTGAAAGTGTCCATAC-TTTTAT-AAAAGGATCGATACTTC-TTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2292964 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
* *
2293029 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTTTAAAATTTTATTTAGAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
2293094 AATAATAATATATATCGTAACGT-AAAAA-AAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
2293157 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAC-
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
2293221 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
2293286 -TACATTATATAAGCGCTACCTATTACATCATA-TTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2293325 TATTATA-TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
2293389 TTATGTTTCAATTTTTTTTAATAGTTTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
*
2293454 ATTTGCACAAAAAATTATTTCATTGTTTTGATATTTTATAAAATA-TATTTAGAA-TTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
2293517 AATAATAATATATATCGTAACGT-AAAAAT-AATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
2293580 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
2293645 TTTATAAAAAGGATAGATACTTTACAATAT-ACCACTACCTATTACATTATA-AAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
2293708 TTACATTATATAAGCGCTACCTATTACATCATA-TTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
* *
2293748 TATTATACTGAATGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2293813 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAA-TTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
* *
2293877 AGTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTA-TTAAAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
2293941 AATAATAATATATATCGTAACGT-AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
*
2294005 CTTAAAAACTCACTCAAAAGATAACCTTAAATT-A--TTTTCCACAGTGAAAAAAGTATGAACAC
260 CTT-AAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAC
2294067 -TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACA-T-TATAAACGATACCT
324 TTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCT
2294129 ATTACATTATATAAGCGCTACCTA-TACATCATATTTTTACC
389 ATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2294170 TATTATATTGAAAGTGTCCAT-CTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2294234 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
*
2294299 TTTTCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
2294364 ATAATAATATATA--GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
* *
2294427 TTAAAACTCACTCAAAGGATAACTTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
2294492 TTATAAAAAGGATAGATACTTTACAATATAACC-CTACCTATTACA-TAT-TAAACGATACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
*
2294554 TACATTATATAAGCGCTATCTATTACATCATATTTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
2294594 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTCTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2294659 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
2294724 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAA-TTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
2294788 ATAAT-A-ATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
2294851 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
2294916 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACA-T-TATAAACGATACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
*
2294979 TACATTATATAAGCGCTACCTATTACATCATATGTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
2295019 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATATTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
2295084 TTATGTATT-AATTTTTTTAATAGTGTTTCATGTTTTCCACTTACAATATTAATTTAATAATTTC
66 TTATGT-TTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
2295148 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAA-TTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
*
2295212 AATAAT-A-ATATATCGTAACGT-AAAAATAAATCATTAGACG-CAAT-A-TACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
*
2295271 CTTAAAACTTACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
2295336 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTA-TACATTATATAAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
*
2295400 TTACATTATATAAGCGCTACCTATTACATC--ATGTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
2295439 TATTATATTGAAAGTGTCCATAC-TTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGCAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
* *
2295503 TTATGTTTTAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTCATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
** *
2295568 ATTTGCACAAAATTTTTTTTGATTGTTTTGATATTTTATAAAATATTATTTAGAA-TTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
2295632 AATAAT-A-ATATATCGTAACGT-AAAAA-AAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
2295693 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
*
2295758 TTTATAAAAAGGATAAAATACTTTACAATATAACCACTACCTA-TACATTATAT-AACGATACCT
325 TTTATAAAAAGGAT-AGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCT
*
2295821 ATTACATTATATAAGCGCTACCTATTACATCATATGTTTACC
389 ATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
* *
2295863 TATTATATTGAAAGTGTCAATACTTTTTATAAAAAGGATCAATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
2295928 TTATG-TTCAA-TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCC
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
2295991 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAA-TT-
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
*
2296054 -TAATAATATATATCGTAACGT-AAAAATAAATCATTAGACGCATATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
*
2296117 TTAAAACTTACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
*
2296182 TTAT-AAAAGGATAGATACTTTACAATATAACAACTACCTATTACATTATATAAACGATACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
2296246 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2296286 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2296351 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
*
2296416 TTTGCAAAAAAAAATTATTTGATTGTTTTGATA--TT-T-AAATATTATTTAGAATTTTTAATTT
131 TTTGC-ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
* *
2296477 AATAATAATATATATCGTAATGTAAAAAATAAATCATTAGACGCATATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
*
2296542 CTTAAAACTTACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
2296607 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
2296672 TTACA-TATATAAGCGCTACCTATTACATCATATTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2296712 TATTATA-TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2296776 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
2296841 TTTGCACAAAAAAATTATTTGATTGTTTTGATA-TTT-TAAAAT-TTATTTAGAATTTTTAATTT
131 TTTGCAC-AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
2296903 AATAATAATAT-TATCGTAACGT--AAAA-AAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
2296964 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAAGTATGGACAC
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTG-AAAAAAGTATGGACAC
2297029 TTTTAT-AAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATA-CT
324 TTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCT
2297092 ATTACATTA-ATAAGCGCTACCTATTACATCATATTTTTACC
389 ATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2297133 TATTATATTGAAAGTGTCCATAC-TTTT-TAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
2297196 TTATGTTTCAATTTTTTTTAATAGTTTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
*
2297261 ATTTGCAC-AAAAATTATTTCATTGTTTTGATATTTTAT-AAATATTATTTAGAA-TTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
2297323 AATAATAATATATATCGTAACGT-AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
2297387 CTTAAAACTCACTCAAAAGATAACCTT---TTAA-GTTTTCCACAGTGAAAAAAGTATGGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
2297448 TTTAT-AAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
2297512 TTACATTATATAAGCGCTACCTATTACATCAT-TTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
* *
2297552 TATTATACTGAATGTGTCCATAC-TTTTATAAAAAGGATCGAT-C-TC-TTT-AAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2297612 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
* *
2297677 GTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAAAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
2297742 ATAATAATA-ATATCGTAACGTAAAAAA-ATAATCATTAGACGCCTATAATTACTAAATTAATAT
196 ATAATAATATATATCGTAACGTAAAAAATA-AATCATTAGACGCCTATAATTACTAAATTAATAT
* *
2297805 CTTAAAAACTCACTCAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGAACAC
260 CTT-AAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAC
2297870 TTTTA-AAAAAGGATAGATACTTTACAATATAACCA-TACCTATTACA-TATATAAACGATACCT
324 TTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCT
2297932 ATTACATTATATAAGCGCTACCTA-TACATCATA-TTTTA-C
389 ATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2297971 TATTATATTGAAA--GTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2298034 TTATGTTTCAA-TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
2298098 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
2298163 ATAATAATAT-TATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTA-TAAA-TAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
* *
2298225 TTAAAACTCACTCAAAGGATAACTTTAAATTAATGTTTTCCACAGTG-AAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
2298289 TTAT-AAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
*
2298353 TACATTATATAAGCGCTATCTATTACAT-ATATTTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2298392 TATTATATTGAAAGTGTCCATAC-TTTTATAAAAAGGATCGATACTTC--TTAAAGTTATGT-AT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2298453 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAA-TTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
2298517 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAA-TT-
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
2298580 -TAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
2298644 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
2298709 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATA-AAACGATACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
*
2298773 TACATTATATAAGCGCTACCTATTACATCATATGTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
2298813 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATATTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
* *
2298878 TTATGGATT-AATTTTTTTAATAGTGTTTCATGTTTTCCACTTACAATATTAATTTAATAATTTC
66 TTAT-GTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
2298942 ATTTGCACAAAAAATTATTTGATTGTTTTGATA-TTTATAAAATA-T-TTTAGAATTTTTTAATT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAA-TTTTTAATT
*
2299004 TAATAAT-A-ATATATCGTAACGTAAAAAATAAATCATTAGACCCCTATAATTACTAAATTAATA
194 TAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATA
2299067 TCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTG-AAAAAGTATGGACAC
259 TCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAC
2299131 TTTTATAAAAAGGA-A-ATAC-TTACAATATAACCACTACCTATTACATTATATAAACGATA-CT
324 TTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCT
*
2299192 ATTACA-TATATAAGCG----CTATTACATCATATGTTTACC
389 ATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2299229 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTA-GTAA-
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2299292 TT-TGTTTC-ATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAA-TTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
*
2299354 TTTGCACAAAAAA-T-TTTGATTGTTTT-AT-TTTT-TAAAATTTTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
2299414 ATAATAATATATATCGTAACGTAAAAAA-AAATCATTAGACGCCTATAATT-CT-AATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
2299476 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAC--
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
2299539 TT-TAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
2299603 TACATTATATAAGCGCTACCTATTACATCATA-TTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2299642 ---TATATTGAAAGTGTCCATACTTTTTATAAAAAGGA-CGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2299703 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCA-CTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
*
2299767 TTTGCAAAAAAAAATTATTTGATTGTTTTGATA-TTTATAAAATATTATTTAGAATTTTTAATTT
131 TTTGC-ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
2299831 AATAATAATATATATCGTAACGT---AAA-AAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
2299892 CTTAAAACTCACTC-AAA-ATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAC-
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
2299954 TTTATAAAAAGGATAGATACTTTAC-A-ATAACCACTACCTA-TACA-T-TATAAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
2300014 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
2300055 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGG-TCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
2300119 TTATGTTTCAATTTTTTTAATAGTGTTTCATG-TTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
* *
2300183 TTTGCACAAAAAAATTATTTGA-TGTTTTGATATTTTTTAAAATTTTATTTA
131 TTTGCAC-AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTA
Statistics
Matches: 17512, Mismatches: 296, Indels: 499
0.96 0.02 0.03
Matches are distributed among these distances:
405 9 0.00
406 3 0.00
407 67 0.00
408 79 0.00
409 69 0.00
410 70 0.00
411 27 0.00
412 110 0.01
413 61 0.00
414 26 0.00
415 165 0.01
416 312 0.02
417 176 0.01
418 312 0.02
419 424 0.02
420 679 0.04
421 914 0.05
422 1117 0.06
423 1061 0.06
424 852 0.05
425 1724 0.10
426 1118 0.06
427 688 0.04
428 684 0.04
429 1373 0.08
430 2638 0.15
431 1671 0.10
432 674 0.04
433 2 0.00
435 3 0.00
436 2 0.00
437 5 0.00
438 10 0.00
439 155 0.01
440 55 0.00
441 129 0.01
442 48 0.00
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.40
Consensus pattern (430 bp):
TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
Found at i:2282559 original size:21 final size:21
Alignment explanation
Indices: 2282529--2282599 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 21
2282519 GATAGATACT
*
2282529 TTACAATATAACCACTACCTA
1 TTACATTATAACCACTACCTA
*
2282550 TTACATTATAAACGA-TACCTA
1 TTACATTAT-AACCACTACCTA
* *
2282571 TTACATTATATAAGCGCTACCTA
1 TTACA-T-TATAACCACTACCTA
2282594 TTACAT
1 TTACAT
2282600 CATATTTTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
21 19 0.46
22 8 0.20
23 14 0.34
ACGTcount: A:0.39, C:0.23, G:0.04, T:0.34
Consensus pattern (21 bp):
TTACATTATAACCACTACCTA
Found at i:2282591 original size:23 final size:22
Alignment explanation
Indices: 2282534--2282604 Score: 90
Period size: 23 Copynumber: 3.2 Consensus size: 22
2282524 ATACTTTACA
*
2282534 ATATAACCACTACCTATTACATT
1 ATATAA-CGCTACCTATTACATT
*
2282557 ATA-AACGATACCTATTACATT
1 ATATAACGCTACCTATTACATT
*
2282578 ATATAAGCGCTACCTATTACATC
1 ATATAA-CGCTACCTATTACATT
2282601 ATAT
1 ATAT
2282605 TTTTACCTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
21 17 0.40
22 4 0.10
23 21 0.50
ACGTcount: A:0.39, C:0.23, G:0.04, T:0.34
Consensus pattern (22 bp):
ATATAACGCTACCTATTACATT
Found at i:2282999 original size:23 final size:23
Alignment explanation
Indices: 2282973--2283035 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
2282963 ATATAACCAC
2282973 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
2282996 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
2283019 TACCTATTACATCATAT
1 TACCTATTACATTATAT
2283036 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:2283429 original size:23 final size:23
Alignment explanation
Indices: 2283403--2283465 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
2283393 ATATAACCAC
2283403 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
2283426 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
2283449 TACCTATTACATCATAT
1 TACCTATTACATTATAT
2283466 GTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:2283860 original size:23 final size:23
Alignment explanation
Indices: 2283834--2283896 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
2283824 ATATAACCAC
2283834 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
2283857 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
2283880 TACCTATTACATCATAT
1 TACCTATTACATTATAT
2283897 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:2284291 original size:23 final size:23
Alignment explanation
Indices: 2284265--2284327 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
2284255 ATATAACCAC
2284265 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
2284288 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
2284311 TACCTATTACATCATAT
1 TACCTATTACATTATAT
2284328 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:2284719 original size:23 final size:23
Alignment explanation
Indices: 2284693--2284755 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
2284683 ATATAACCAC
2284693 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
2284716 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
2284739 TACCTATTACATCATAT
1 TACCTATTACATTATAT
2284756 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:2285151 original size:23 final size:23
Alignment explanation
Indices: 2285125--2285187 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
2285115 ATATAACAAC
2285125 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
2285148 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
2285171 TACCTATTACATCATAT
1 TACCTATTACATTATAT
2285188 GTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:2285581 original size:23 final size:23
Alignment explanation
Indices: 2285555--2285617 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
2285545 ATATAACCAC
2285555 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
2285578 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
2285601 TACCTATTACATCATAT
1 TACCTATTACATTATAT
2285618 GTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:2286011 original size:23 final size:23
Alignment explanation
Indices: 2285985--2286047 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
2285975 ATATAACCAC
2285985 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
2286008 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
2286031 TACCTATTACATCATAT
1 TACCTATTACATTATAT
2286048 GTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:2286441 original size:23 final size:23
Alignment explanation
Indices: 2286415--2286477 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
2286405 ATATAACAAC
2286415 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
2286438 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
2286461 TACCTATTACATCATAT
1 TACCTATTACATTATAT
2286478 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Done.