Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003805.1 Hibiscus syriacus cultivar Beakdansim tig00008145_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2300233
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 11
Found at i:1674141 original size:47 final size:45
Alignment explanation
Indices: 1673884--1674119 Score: 339
Period size: 47 Copynumber: 5.1 Consensus size: 45
1673874 TGGTATATGG
* *
1673884 TTATGGAAT-AATGGCAAGTATATTGGTAAAATAAGCTTACGAGC
1 TTATGGAATAAATGGTAAGTATTTTGGTAAAATAAGCTTACGAGC
* *
1673928 TTATGGAAATAAATGGTAAGTATATTGATAAAATAAGCTTACGAGC
1 TTATGG-AATAAATGGTAAGTATTTTGGTAAAATAAGCTTACGAGC
*
1673974 TTATGGAATTTAAAGGGTAAGTATTTTGGTAAAATAAGCTTACGAGC
1 TTATGGAA--TAAATGGTAAGTATTTTGGTAAAATAAGCTTACGAGC
* *
1674021 TTATGGAAATAAATGGTAAGTATATTGATAAAATAAGCTTACGAGC
1 TTATGG-AATAAATGGTAAGTATTTTGGTAAAATAAGCTTACGAGC
*
1674067 TTATGGAATTTAAATGGTAAGTATTTTGGTAAAATAAGGTTACGAGC
1 TTATGGAA--TAAATGGTAAGTATTTTGGTAAAATAAGCTTACGAGC
1674114 TTATGG
1 TTATGG
1674120 TAAGAGATTT
Statistics
Matches: 174, Mismatches: 11, Indels: 11
0.89 0.06 0.06
Matches are distributed among these distances:
44 6 0.03
45 7 0.04
46 79 0.45
47 80 0.46
48 2 0.01
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (45 bp):
TTATGGAATAAATGGTAAGTATTTTGGTAAAATAAGCTTACGAGC
Found at i:1674950 original size:24 final size:24
Alignment explanation
Indices: 1674896--1674950 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 24
1674886 CCACAGCTCG
* * **
1674896 TATAAATTGCATCGAAGTACCATG
1 TATAAATTGCACCAAAGTACCACA
* *
1674920 TAGAAATTGCACCAAAGTGCCACA
1 TATAAATTGCACCAAAGTACCACA
1674944 TATAAAT
1 TATAAAT
1674951 GTCCAATGAC
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (24 bp):
TATAAATTGCACCAAAGTACCACA
Found at i:1675005 original size:23 final size:24
Alignment explanation
Indices: 1674976--1675036 Score: 81
Period size: 23 Copynumber: 2.6 Consensus size: 24
1674966 AGATATCACA
**
1674976 AAGGACCACGTAGAAA-TGTCTTG
1 AAGGACCACGTAGAAATTGTCCCG
1674999 AAGGACCACGTA-AAATTGTCCCG
1 AAGGACCACGTAGAAATTGTCCCG
*
1675022 AAGGACCGCGTAGAA
1 AAGGACCACGTAGAA
1675037 CCCTCGAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 3 0.09
23 28 0.85
24 2 0.06
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.16
Consensus pattern (24 bp):
AAGGACCACGTAGAAATTGTCCCG
Found at i:1685782 original size:96 final size:98
Alignment explanation
Indices: 1685618--1685827 Score: 318
Period size: 96 Copynumber: 2.2 Consensus size: 98
1685608 TAGTCGCTTC
*
1685618 ACCTAAAAATTTAAAATTATCAAATAATTTGAAATTTTTGTCTATATATTTTATTGAAAATATAT
1 ACCTAAAAATTTAAAATTACCAAATAATTTGAAATTTTTGTCTATATATTTTATTGAAAATATAT
*
1685683 TTTCGTCCCATAGAATTTTATAAG-CCGTCCA-
66 TTTCGTCCCATAGAATTTGATAAGTCCGTCCAT
* *
1685714 ACCTAAAAATTTAAAATTACCATATAATTTGAAA-TTTTGTCTATGTATTTTTATTGAAAATATA
1 ACCTAAAAATTTAAAATTACCAAATAATTTGAAATTTTTGTCTATATA-TTTTATTGAAAATATA
* *
1685778 TTTTCGTCTCATTGAATTTGATAAGTCCGTCCAT
65 TTTTCGTCCCATAGAATTTGATAAGTCCGTCCAT
* *
1685812 TCCTAAAATTTTAAAA
1 ACCTAAAAATTTAAAA
1685828 ATTCACCCTA
Statistics
Matches: 103, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
95 12 0.12
96 70 0.68
97 7 0.07
98 14 0.14
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (98 bp):
ACCTAAAAATTTAAAATTACCAAATAATTTGAAATTTTTGTCTATATATTTTATTGAAAATATAT
TTTCGTCCCATAGAATTTGATAAGTCCGTCCAT
Found at i:1687194 original size:37 final size:37
Alignment explanation
Indices: 1687144--1687217 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
1687134 TCGAGGGAGG
1687144 TTGAAAATACAACCTTCTGCTAGTCAAGTTCTCTTAT
1 TTGAAAATACAACCTTCTGCTAGTCAAGTTCTCTTAT
1687181 TTGAAAATACAACCTTCTGCTAGTCAAGTTCTCTTAT
1 TTGAAAATACAACCTTCTGCTAGTCAAGTTCTCTTAT
1687218 AACAACTATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.38
Consensus pattern (37 bp):
TTGAAAATACAACCTTCTGCTAGTCAAGTTCTCTTAT
Found at i:1689975 original size:60 final size:59
Alignment explanation
Indices: 1689909--1690065 Score: 201
Period size: 60 Copynumber: 2.6 Consensus size: 59
1689899 TATAACTTTT
* *
1689909 ATTTTAAATTAGTCCTTAAACATTTGAATATTTTAAATTT-ATCCCTAAATTATGACTATC
1 ATTTTAAATTAGTCCTTAAACTTTTGAATATTTT-AATTTGATCCCTAAACTATGA-TATC
* * *
1689969 ATTTTAAATTAGTCCTTAAACTTTTGAACATTCTATTTTGATCCCTAAACTATGATATC
1 ATTTTAAATTAGTCCTTAAACTTTTGAATATTTTAATTTGATCCCTAAACTATGATATC
** *
1690028 -TTTCTAAATTAGTCCCCAAACTTTTGAATATTTCAATT
1 ATTT-TAAATTAGTCCTTAAACTTTTGAATATTTTAATT
1690066 CCATCCACAA
Statistics
Matches: 84, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
58 3 0.04
59 36 0.43
60 45 0.54
ACGTcount: A:0.34, C:0.16, G:0.06, T:0.45
Consensus pattern (59 bp):
ATTTTAAATTAGTCCTTAAACTTTTGAATATTTTAATTTGATCCCTAAACTATGATATC
Found at i:1690382 original size:60 final size:58
Alignment explanation
Indices: 1690201--1690387 Score: 191
Period size: 60 Copynumber: 3.1 Consensus size: 58
1690191 TATATATGTC
* *
1690201 TAGTTTGGGATGAAATTGGAATATTTAAAAAGTTTTGGGACCAATTTAGAATGAAG-ATCA
1 TAGTTTGGGATGAAATTGAAATATTT-AAAAG-TTTGGGACCAATTTAGAATG-AGTTTCA
* * * *
1690261 TAGTTTGGGGATGAAATTGAAATGTTCAAAAGTTTGAGGACTAATTTTGAAT--GTTGGTCA
1 TAGTTT-GGGATGAAATTGAAATATTTAAAAGTTTG-GGACCAATTTAGAATGAGTT--TCA
* *
1690321 TAGTTTAGGTATGAAATTGAAATATTTAAAAGTTTAGGGACCAATTTAAAATGAGTTTCA
1 TAGTTT-GGGATGAAATTGAAATATTTAAAAGTTT-GGGACCAATTTAGAATGAGTTTCA
*
1690381 TACTTTG
1 TAGTTTG
1690388 AGGACATGTG
Statistics
Matches: 105, Mismatches: 14, Indels: 17
0.77 0.10 0.12
Matches are distributed among these distances:
57 1 0.01
59 5 0.05
60 78 0.74
61 18 0.17
62 3 0.03
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.36
Consensus pattern (58 bp):
TAGTTTGGGATGAAATTGAAATATTTAAAAGTTTGGGACCAATTTAGAATGAGTTTCA
Found at i:1696960 original size:22 final size:22
Alignment explanation
Indices: 1696921--1696963 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
1696911 TTTGACTTTT
* *
1696921 CGATCAAATTTAAAGGTCAGAC
1 CGATCAAAGTCAAAGGTCAGAC
*
1696943 CGATCAAAGTCAACGGTCAGA
1 CGATCAAAGTCAAAGGTCAGA
1696964 TCGGTCAACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (22 bp):
CGATCAAAGTCAAAGGTCAGAC
Found at i:1704814 original size:31 final size:31
Alignment explanation
Indices: 1704779--1704839 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
1704769 TCATATAAAC
1704779 CATATATTTCTCATATAAATGAGAATGCAAA
1 CATATATTTCTCATATAAATGAGAATGCAAA
1704810 CATATATTTCTCATATAAATGAGAATGCAA
1 CATATATTTCTCATATAAATGAGAATGCAA
1704840 GATATGTGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (31 bp):
CATATATTTCTCATATAAATGAGAATGCAAA
Found at i:1712431 original size:743 final size:745
Alignment explanation
Indices: 1710446--1712671 Score: 3611
Period size: 743 Copynumber: 3.0 Consensus size: 745
1710436 ATTATAATGA
*
1710446 TAAAATTTTCTGACTCTT-ATGAAACCAAGACTATAACATA-TTATTTTCAATGAGATTAAGAAA
1 TAAAATTTTCTGACTCTTAATGAAACCAAGACTATAACA-AGTTCTTTTCAATGAGATTAAGAAA
*
1710509 TTGAATTTGTATACCTACAAAATTAATAAAGTATTATTATAAGGTATGTGTAGTAAAGTTGAGTT
65 TTGAATTTGTATACCTAGAAAATTAATAAAGTATTATTATAAGGTATGTGTAGTAAAGTTGAGTT
*
1710574 ATTCTACTAAAGCAATTGGTTATAGAGGTAACTCAAAAGCCTTGGCTTTATGAATAAATTACATT
130 ATTCTACTAAAGCAATTGGTTATAGAGGTAACTAAAAAGCCTTGGCTTTATGAATAAATTACATT
* * *
1710639 CAAACCATGAA-ATTGATATGATACTTGGTAATTCGGTGTTTGCTCCACTATGGTTACCAAGTCA
195 CAAACCAT-AACATTGATCTGATACTTGGCAATTCGGTGTTTGCTCCACTATGGTTGCCAAGTCA
* * *
1710703 AAGATTTTTTAATGGGATGAATACTTCAGCTAAGCCAAAATAAGGTCAAATGAGACTAAAATTAA
259 AAGATTTTGTGATGGGATGAATCCTTCAGCTAAGCCAAAATAAGGTCAAATGAGACTAAAATTAA
* *
1710768 TTAAATACGAACTAAAAAGTTCAAAGTTTAAATGAATAAGGAGTTTCAATGAACATGGACTAAGG
324 TTAAATACAAACTAAAAAGTTCAAGGTTTAAATGAATAAGGAGTTTCAATGAACATGGACTAAGG
*
1710833 GTGTCG-AGAAACACATGTTATAGTTAAATTCACACAAGCACTCAGGAATTCTATATTTAAATCG
389 GAGT-GAAGAAACACATGTTATAGTTAAATTCACACAAGCACTCAGGAATTCTATATTTAAATCG
* * *
1710897 ATATTTCTACACTATCTCTTCCAAAGGAGTCTATGAAACTTAAAAAAAATGTAAGGTTTTAGAGA
453 ATATTTCTGCACTACCTCTTCCAAA-GAGTCTATGAAACTT-GAAAAAATGTAAGGTTTTAGAGA
*
1710962 A-AAAAATAGAAATGTTCTAAAAGGTCTAGCAGTTGAATATGTTAGTTGCGTCATTTTGTTCGCA
516 ACAAAAATAGAAATGTTCTAAAAGGTCTAGCAGTTGAGTATGTTAGTTGCGTCATTTTGTTCGCA
* *
1711026 TCCGACTAAAATGCCAAGCCTTAAAAGAAGGGTGTGTCACAATGTTCGCATAAACAGAGACAAAG
581 TCCGACTAAAATGCCAAGCCTCAAAAGAAGGGTGTGTCACAATGTTCACATAAACAGAGACAAAG
*
1711091 AAGGCAACTCGATGGTTGAAACCATAAAAAATTTAAGAAGCTAACCTAAAATCAACCGATCAATC
646 AAGGCAACTCGATGGTTGAAACCATAAAAAATTTAGGAAGCTAACCTAAAATCAACCGATCAATC
* *
1711156 TTGAGACTTGTCAAAGACGTATAACTGTGAAAGAT
711 TTGAGACTTGTCAAAGACTTATAAATGTGAAAGAT
* * * *
1711191 TAAAATTTTCTAACTCTGAATGAAACCTATACTATAACAAGTTCTTTTCAATGAGATTAAGAAAT
1 TAAAATTTTCTGACTCTTAATGAAACCAAGACTATAACAAGTTCTTTTCAATGAGATTAAGAAAT
*
1711256 TGAATTTGTATACCTAG--AA--AAT----TA--A-TA-AA-GTATGTGTAGTAAAGTTGAGCTA
66 TGAATTTGTATACCTAGAAAATTAATAAAGTATTATTATAAGGTATGTGTAGTAAAGTTGAGTTA
* *
1711308 TTCTACTAAAGCAATTGGTTATAGAGGTAACTAAAAA-CATTAGCTTTATGAATAAATTACATAT
131 TTCTACTAAAGCAATTGGTTATAGAGGTAACTAAAAAGCCTTGGCTTTATGAATAAATTACAT-T
* * *
1711372 -AAACAATGACATTGATCTGATACTTGGCAATTCGGTGTTTGCTACACTATGGTTGCCAAGTCAA
195 CAAACCATAACATTGATCTGATACTTGGCAATTCGGTGTTTGCTCCACTATGGTTGCCAAGTCAA
* *
1711436 AGATTTTGTGATGGGATGAATCCATCAGCTAAGCTAAAATAAGGTCAAATGAGACTAAAATTAAT
260 AGATTTTGTGATGGGATGAATCCTTCAGCTAAGCCAAAATAAGGTCAAATGAGACTAAAATTAAT
* *
1711501 TAAATACAAACCAAAAAGTTCAAGGTTTAAATGAAT-AGGAGTTTCAATGAACATGGACAAAGGG
325 TAAATACAAACTAAAAAGTTCAAGGTTTAAATGAATAAGGAGTTTCAATGAACATGGACTAAGGG
*
1711565 AGT-AGAGAAACACATGTTATAGTTAAATTCACACAAGCACTCAGGAATTCTATATTTAAATTGA
390 AGTGA-AGAAACACATGTTATAGTTAAATTCACACAAGCACTCAGGAATTCTATATTTAAATCGA
1711629 TATTTCTGCACTACCTCTTCCAAAGCAGTCTATGAAACTTGAAAAAATGTAAGGTTTTAGAGAAC
454 TATTTCTGCACTACCTCTTCCAAAG-AGTCTATGAAACTTGAAAAAATGTAAGGTTTTAGAGAAC
* *
1711694 AAAAATAGAAATGTTCTAAAAGGTATAGCAGTTGAGTATGTTAGTTGCATCATTTTGTTCGCATC
518 AAAAATAGAAATGTTCTAAAAGGTCTAGCAGTTGAGTATGTTAGTTGCGTCATTTTGTTCGCATC
1711759 CGACTAAAATGCCAAGCCTCAAAAGAAGGGTGTGTCACAATGTTCACATAAACAGAGACAAAGAA
583 CGACTAAAATGCCAAGCCTCAAAAGAAGGGTGTGTCACAATGTTCACATAAACAGAGACAAAGAA
* * *
1711824 GGCAACTCGATGGTTGAAGCCAT-AAAATTTTAGGAAGCTAACCTAAAATCAACCGATCAATCCT
648 GGCAACTCGATGGTTGAAACCATAAAAAATTTAGGAAGCTAACCTAAAATCAACCGATCAATCTT
*
1711888 GAGACTTGTCAAAGACTTATAATTGTGAAAGAT
713 GAGACTTGTCAAAGACTTATAAATGTGAAAGAT
*
1711921 TAAAATTTT-TGACTCTTAATGAAACCAAGACTATAACAGGTTCTTTTCAATGAGATTAAGAAAT
1 TAAAATTTTCTGACTCTTAATGAAACCAAGACTATAACAAGTTCTTTTCAATGAGATTAAGAAAT
1711985 TGAATTTGTATACCTAGAAAATTAATAAAGTATTATTATAAGGTATGTGTAGTAAAGTTGAGTTA
66 TGAATTTGTATACCTAGAAAATTAATAAAGTATTATTATAAGGTATGTGTAGTAAAGTTGAGTTA
* ** *
1712050 TTCTACTAAAGCAATTGATTATATCGGTAACTAAAAAGCCTTGGCATTATGAATAAATTACATTC
131 TTCTACTAAAGCAATTGGTTATAGAGGTAACTAAAAAGCCTTGGCTTTATGAATAAATTACATTC
*
1712115 AAACCATAACATTGATCTGATACTTGGCAATTCGGTGTTTTCTCCACTATGGTTGCCAAGTCAAA
196 AAACCATAACATTGATCTGATACTTGGCAATTCGGTGTTTGCTCCACTATGGTTGCCAAGTCAAA
1712180 GATTTTGTGATGGGATGAATCCTTCAGCTAAGCCAAAATAAGGTCAAATGAGACTAAAATTAATT
261 GATTTTGTGATGGGATGAATCCTTCAGCTAAGCCAAAATAAGGTCAAATGAGACTAAAATTAATT
** *
1712245 AAATACAAACTAAAATTTTCAAGGTTTAAATGAATAAGGAGTTTCAATTAACATGGACTAAGGGA
326 AAATACAAACTAAAAAGTTCAAGGTTTAAATGAATAAGGAGTTTCAATGAACATGGACTAAGGGA
*
1712310 GTGAAGAAACACATGTTATAGTTAAATTCACACAAGCACTCAGGAATTCTATATTGAAATCGATA
391 GTGAAGAAACACATGTTATAGTTAAATTCACACAAGCACTCAGGAATTCTATATTTAAATCGATA
* * *
1712375 TTTCTGCACTACCTCTTCCAAATGAGTCTATGAAAATTGAAAAAAT-TTATGTTTTAGAGAACAA
456 TTTCTGCACTACCTCTTCCAAA-GAGTCTATGAAACTTGAAAAAATGTAAGGTTTTAGAGAACAA
* * * *
1712439 AAATAGAAACGTTATAAAATGTCTAGCAGTTGAGTATGTTAGTTGCGTCATTTTGTTCGTATCCG
520 AAATAGAAATGTTCTAAAAGGTCTAGCAGTTGAGTATGTTAGTTGCGTCATTTTGTTCGCATCCG
* * * *
1712504 ACTAAAATGCCAAGCCTCAAAATAAAGGTGTGTCATAATGTTCACATAAACAGAGATAAAGAAGG
585 ACTAAAATGCCAAGCCTCAAAAGAAGGGTGTGTCACAATGTTCACATAAACAGAGACAAAGAAGG
* *
1712569 CAACTCGATGGTTGAAACCATAAAAAATTTAGGAAGCTAACCTAAAATCAACCTATCAATATTGA
650 CAACTCGATGGTTGAAACCATAAAAAATTTAGGAAGCTAACCTAAAATCAACCGATCAATCTTGA
1712634 GACTTGTCAAAGACTTATAAATGTGAAAGAT
715 GACTTGTCAAAGACTTATAAATGTGAAAGAT
1712665 TAAAATT
1 TAAAATT
1712672 GTAATTGATT
Statistics
Matches: 1369, Mismatches: 85, Indels: 55
0.91 0.06 0.04
Matches are distributed among these distances:
729 67 0.05
730 102 0.07
731 273 0.20
732 172 0.13
733 62 0.05
734 2 0.00
735 2 0.00
736 1 0.00
737 2 0.00
738 2 0.00
739 1 0.00
740 2 0.00
741 2 0.00
742 60 0.04
743 334 0.24
744 209 0.15
745 19 0.01
746 57 0.04
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.30
Consensus pattern (745 bp):
TAAAATTTTCTGACTCTTAATGAAACCAAGACTATAACAAGTTCTTTTCAATGAGATTAAGAAAT
TGAATTTGTATACCTAGAAAATTAATAAAGTATTATTATAAGGTATGTGTAGTAAAGTTGAGTTA
TTCTACTAAAGCAATTGGTTATAGAGGTAACTAAAAAGCCTTGGCTTTATGAATAAATTACATTC
AAACCATAACATTGATCTGATACTTGGCAATTCGGTGTTTGCTCCACTATGGTTGCCAAGTCAAA
GATTTTGTGATGGGATGAATCCTTCAGCTAAGCCAAAATAAGGTCAAATGAGACTAAAATTAATT
AAATACAAACTAAAAAGTTCAAGGTTTAAATGAATAAGGAGTTTCAATGAACATGGACTAAGGGA
GTGAAGAAACACATGTTATAGTTAAATTCACACAAGCACTCAGGAATTCTATATTTAAATCGATA
TTTCTGCACTACCTCTTCCAAAGAGTCTATGAAACTTGAAAAAATGTAAGGTTTTAGAGAACAAA
AATAGAAATGTTCTAAAAGGTCTAGCAGTTGAGTATGTTAGTTGCGTCATTTTGTTCGCATCCGA
CTAAAATGCCAAGCCTCAAAAGAAGGGTGTGTCACAATGTTCACATAAACAGAGACAAAGAAGGC
AACTCGATGGTTGAAACCATAAAAAATTTAGGAAGCTAACCTAAAATCAACCGATCAATCTTGAG
ACTTGTCAAAGACTTATAAATGTGAAAGAT
Found at i:1715810 original size:2 final size:2
Alignment explanation
Indices: 1715805--1715860 Score: 98
Period size: 2 Copynumber: 29.0 Consensus size: 2
1715795 AGCTTGTTTT
1715805 TA TA TA TA T- TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1715845 TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA
1715861 AAGAATACAC
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
1 2 0.04
2 50 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1719023 original size:5 final size:5
Alignment explanation
Indices: 1719010--1719039 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
1719000 TCGTAGCCCT
*
1719010 TTCTC TTCTA TTCTC TTCTC TTCTC TTCTC
1 TTCTC TTCTC TTCTC TTCTC TTCTC TTCTC
1719040 ATTTTTCTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.03, C:0.37, G:0.00, T:0.60
Consensus pattern (5 bp):
TTCTC
Found at i:1721044 original size:21 final size:21
Alignment explanation
Indices: 1720992--1721038 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
1720982 GTTTCTAGAT
*
1720992 TCGCAACGCGAACTTCGACTA
1 TCGCAACGCGAACTTCAACTA
1721013 TCGCAACGCGAACTTCAACTA
1 TCGCAACGCGAACTTCAACTA
1721034 TCGCA
1 TCGCA
1721039 TTGCGATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.30, C:0.34, G:0.17, T:0.19
Consensus pattern (21 bp):
TCGCAACGCGAACTTCAACTA
Found at i:1721083 original size:21 final size:21
Alignment explanation
Indices: 1721053--1721133 Score: 94
Period size: 21 Copynumber: 4.0 Consensus size: 21
1721043 GATTTACATA
* *
1721053 TTCGCATTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
* ** *
1721074 TTCGCGTTGCTATTTTCCAAA
1 TTCGCGTTGCGATAGTCCAAG
1721095 TT--CGTTGCGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
1721114 TTCGCGTTGCGATAGTCCAA
1 TTCGCGTTGCGATAGTCCAA
1721134 AATCGCAACG
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
19 15 0.31
21 33 0.69
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.33
Consensus pattern (21 bp):
TTCGCGTTGCGATAGTCCAAG
Found at i:1721133 original size:40 final size:40
Alignment explanation
Indices: 1721059--1721134 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
1721049 CATATTCGCA
* * **
1721059 TTGCGATAGTCGAAGTTCGCGTTGCTATTTTCCAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATAGTCCAAATTCG
1721099 TTGCGATAGTCCAAGTTCGCGTTGCGATAGTCCAAA
1 TTGCGATAGTCCAAGTTCGCGTTGCGATAGTCCAAA
1721135 ATCGCAACGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (40 bp):
TTGCGATAGTCCAAGTTCGCGTTGCGATAGTCCAAATTCG
Found at i:1722039 original size:23 final size:23
Alignment explanation
Indices: 1722007--1722144 Score: 98
Period size: 23 Copynumber: 6.4 Consensus size: 23
1721997 ACTATCCCAA
*
1722007 CGAATTTGGAATAAATCGCAACG
1 CGAACTTGGAATAAATCGCAACG
*
1722030 TGAACTTGGAATAAATCGCAACG
1 CGAACTTGGAATAAATCGCAACG
* *
1722053 CGAACTTCGACT--ATCGCAA--
1 CGAACTTGGAATAAATCGCAACG
* * * *
1722072 CGAAATTAGACT--ACCGCAACG
1 CGAACTTGGAATAAATCGCAACG
* *
1722093 CGAACTTGGACT--ATCCCAA--
1 CGAACTTGGAATAAATCGCAACG
* *
1722112 CGAATTTGGAATAAATCACAACG
1 CGAACTTGGAATAAATCGCAACG
1722135 CGAACTTGGA
1 CGAACTTGGA
1722145 CTATCGCAAC
Statistics
Matches: 93, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
19 26 0.28
21 28 0.30
23 39 0.42
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (23 bp):
CGAACTTGGAATAAATCGCAACG
Found at i:1722070 original size:21 final size:21
Alignment explanation
Indices: 1722021--1722154 Score: 114
Period size: 21 Copynumber: 6.4 Consensus size: 21
1722011 TTTGGAATAA
* *
1722021 ATCGCAACGTGAACTTGGAAT
1 ATCGCAACGCGAACTTGGACT
*
1722042 AAATCGCAACGCGAACTTCGACT
1 --ATCGCAACGCGAACTTGGACT
* *
1722065 ATCGCAA--CGAAATTAGACT
1 ATCGCAACGCGAACTTGGACT
*
1722084 ACCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
* * *
1722105 ATCCCAA--CGAATTTGGAAT
1 ATCGCAACGCGAACTTGGACT
*
1722124 AAATCACAACGCGAACTTGGACT
1 --ATCGCAACGCGAACTTGGACT
1722147 ATCGCAAC
1 ATCGCAAC
1722155 AAATTTGGAA
Statistics
Matches: 89, Mismatches: 16, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
19 26 0.29
21 35 0.39
23 28 0.31
ACGTcount: A:0.36, C:0.26, G:0.19, T:0.19
Consensus pattern (21 bp):
ATCGCAACGCGAACTTGGACT
Found at i:1722143 original size:42 final size:42
Alignment explanation
Indices: 1722021--1722171 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 42
1722011 TTTGGAATAA
* *
1722021 ATCGCAACGTGAACTTGGAATAAATCGCAACGCGAACTTCGACT
1 ATCGCAAC--GAATTTGGAATAAATCGCAACGCGAACTTGGACT
* * * *
1722065 ATCGCAACGAAATTAGACT--ACCGCAACGCGAACTTGGACT
1 ATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTGGACT
* *
1722105 ATCCCAACGAATTTGGAATAAATCACAACGCGAACTTGGACT
1 ATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTGGACT
*
1722147 ATCGCAACAAATTTGG-A-AAATCGCA
1 ATCGCAACGAATTTGGAATAAATCGCA
1722172 TTGCGATAGT
Statistics
Matches: 91, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 41 0.45
41 1 0.01
42 41 0.45
44 8 0.09
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.20
Consensus pattern (42 bp):
ATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTGGACT
Found at i:1724123 original size:13 final size:13
Alignment explanation
Indices: 1724107--1724153 Score: 67
Period size: 13 Copynumber: 3.6 Consensus size: 13
1724097 GCAATGTAAT
1724107 TCATAAATGCGCG
1 TCATAAATGCGCG
* *
1724120 TCATAAATGTGTG
1 TCATAAATGCGCG
*
1724133 TCATAAATGCACG
1 TCATAAATGCGCG
1724146 TCATAAAT
1 TCATAAAT
1724154 TTATGACGCG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (13 bp):
TCATAAATGCGCG
Found at i:1724128 original size:26 final size:26
Alignment explanation
Indices: 1724099--1724158 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
1724089 AATGACGCGC
*
1724099 AATGTAAT-TCATAAATGCGCGTCATA
1 AATGT-ATGTCATAAATGCACGTCATA
*
1724125 AATGTGTGTCATAAATGCACGTCATA
1 AATGTATGTCATAAATGCACGTCATA
*
1724151 AATTTATG
1 AATGTATG
1724159 ACGCGCAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 1 0.03
26 28 0.97
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (26 bp):
AATGTATGTCATAAATGCACGTCATA
Found at i:1724240 original size:28 final size:28
Alignment explanation
Indices: 1724200--1724306 Score: 214
Period size: 28 Copynumber: 3.8 Consensus size: 28
1724190 TCTACTAGTG
1724200 AGGCTTAGTTAAAATTATAAACACAAGT
1 AGGCTTAGTTAAAATTATAAACACAAGT
1724228 AGGCTTAGTTAAAATTATAAACACAAGT
1 AGGCTTAGTTAAAATTATAAACACAAGT
1724256 AGGCTTAGTTAAAATTATAAACACAAGT
1 AGGCTTAGTTAAAATTATAAACACAAGT
1724284 AGGCTTAGTTAAAATTATAAACA
1 AGGCTTAGTTAAAATTATAAACA
1724307 TACGGTGATG
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 79 1.00
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.29
Consensus pattern (28 bp):
AGGCTTAGTTAAAATTATAAACACAAGT
Found at i:1726273 original size:45 final size:45
Alignment explanation
Indices: 1726177--1726470 Score: 364
Period size: 45 Copynumber: 6.6 Consensus size: 45
1726167 CCTCCATTCA
* * * * * *
1726177 TGTTTATAATGCA-TCATTATGCATTTTCAAATATAACATACTTTTA
1 TGTTGATAATGCACCCA-TATGCA-TTTCAACTATAGCATATTTTTC
* *
1726223 TGTTGATAACGCACCCATATGTATTTCAACTATAGCATATTTTTC
1 TGTTGATAATGCACCCATATGCATTTCAACTATAGCATATTTTTC
1726268 TGTTGATAATGCACCCATATGCATTTCAACTATAGCATACTTTTT-
1 TGTTGATAATGCACCCATATGCATTTCAACTATAGCATA-TTTTTC
1726313 TGTTGATAATGCACCCATATGCATTTCAACTATAGCATA--TTTC
1 TGTTGATAATGCACCCATATGCATTTCAACTATAGCATATTTTTC
* **
1726356 TGTTGATAATGAACCCATATGCATTTCAACTATAGCATACGTTTC
1 TGTTGATAATGCACCCATATGCATTTCAACTATAGCATATTTTTC
* *
1726401 TGTTGATAATGCACCCATATGCATTTCAACTATGGCATCA-TTTTA
1 TGTTGATAATGCACCCATATGCATTTCAACTATAGCAT-ATTTTTC
** * *
1726446 TGCCGATAATGAATCCATATGCATT
1 TGTTGATAATGCACCCATATGCATT
1726471 ATTATTTTCA
Statistics
Matches: 223, Mismatches: 19, Indels: 13
0.87 0.07 0.05
Matches are distributed among these distances:
42 3 0.01
43 38 0.17
45 158 0.71
46 22 0.10
47 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.39
Consensus pattern (45 bp):
TGTTGATAATGCACCCATATGCATTTCAACTATAGCATATTTTTC
Found at i:1726382 original size:133 final size:133
Alignment explanation
Indices: 1726176--1726470 Score: 387
Period size: 133 Copynumber: 2.2 Consensus size: 133
1726166 ACCTCCATTC
* * *
1726176 ATGTTTATAATGCATCATTATGCATTTTCAAATATAACATACTTTTATGTTGATAACGCACCCAT
1 ATGTTGATAATGCACCA-TATGCA-TTTCAAATATAACATAC-TTTATGTTGATAACGAACCCAT
* **
1726241 ATGTATTTCAACTATAGCATATTTTTCTGTTGATAATGCACCCATATGCATTTCAACTATAGCAT
63 ATGCATTTCAACTATAGCATACGTTTCTGTTGATAATGCACCCATATGCATTTCAACTATAGCAT
1726306 -ACTTTT
128 CA-TTTT
* * * * *
1726312 TTGTTGATAATGCACCCATATGCATTTCAACTATAGCATA-TTTCTGTTGATAATGAACCCATAT
1 ATGTTGATAATGCA-CCATATGCATTTCAAATATAACATACTTTATGTTGATAACGAACCCATAT
*
1726376 GCATTTCAACTATAGCATACGTTTCTGTTGATAATGCACCCATATGCATTTCAACTATGGCATCA
65 GCATTTCAACTATAGCATACGTTTCTGTTGATAATGCACCCATATGCATTTCAACTATAGCATCA
1726441 TTTT
130 TTTT
** *
1726445 ATGCCGATAATGAATCCATATGCATT
1 ATGTTGATAATGCA-CCATATGCATT
1726471 ATTATTTTCA
Statistics
Matches: 140, Mismatches: 17, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
133 105 0.75
134 1 0.01
135 14 0.10
136 18 0.13
137 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.39
Consensus pattern (133 bp):
ATGTTGATAATGCACCATATGCATTTCAAATATAACATACTTTATGTTGATAACGAACCCATATG
CATTTCAACTATAGCATACGTTTCTGTTGATAATGCACCCATATGCATTTCAACTATAGCATCAT
TTT
Found at i:1726405 original size:88 final size:89
Alignment explanation
Indices: 1726194--1726470 Score: 403
Period size: 88 Copynumber: 3.1 Consensus size: 89
1726184 AATGCATCAT
* * * *
1726194 TATGCATTTTCAAATATAACATACTTTTATGTTGATAACGCACCCATATGTATTTCAACTATAGC
1 TATGCA-TTTCAACTATAGCATACTTTTATGTTGATAATGCACCCATATGCATTTCAACTATAGC
*
1726259 ATATTTTTCTGTTGATAATGCACCCA
65 ATA-TTTTCTGTTGATAATGAACCCA
*
1726285 TATGCATTTCAACTATAGCATACTTTTTTGTTGATAATGCACCCATATGCATTTCAACTATAGCA
1 TATGCATTTCAACTATAGCATACTTTTATGTTGATAATGCACCCATATGCATTTCAACTATAGCA
1726350 TA-TTTCTGTTGATAATGAACCCA
66 TATTTTCTGTTGATAATGAACCCA
* * *
1726373 TATGCATTTCAACTATAGCATACGTTTCTGTTGATAATGCACCCATATGCATTTCAACTATGGCA
1 TATGCATTTCAACTATAGCATACTTTTATGTTGATAATGCACCCATATGCATTTCAACTATAGCA
* ** *
1726438 TCATTTTATGCCGATAATGAATCCA
66 T-ATTTTCTGTTGATAATGAACCCA
1726463 TATGCATT
1 TATGCATT
1726471 ATTATTTTCA
Statistics
Matches: 171, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
88 83 0.49
89 1 0.01
90 81 0.47
91 6 0.04
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (89 bp):
TATGCATTTCAACTATAGCATACTTTTATGTTGATAATGCACCCATATGCATTTCAACTATAGCA
TATTTTCTGTTGATAATGAACCCA
Found at i:1726907 original size:22 final size:21
Alignment explanation
Indices: 1726865--1726935 Score: 85
Period size: 22 Copynumber: 3.5 Consensus size: 21
1726855 TGGCTTATCA
*
1726865 GTATCGATAC-CCATACCATG
1 GTATCGATACTCCATACTATG
*
1726885 GTATCGATACTACCATATTATG
1 GTATCGATACT-CCATACTATG
*
1726907 GTACCGATACT--ATACTATG
1 GTATCGATACTCCATACTATG
1726926 GTATCGATAC
1 GTATCGATAC
1726936 CATTTTTGCA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
19 16 0.36
20 10 0.23
22 18 0.41
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (21 bp):
GTATCGATACTCCATACTATG
Found at i:1728022 original size:20 final size:20
Alignment explanation
Indices: 1727974--1728045 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
1727964 AGTGAACTTG
1727974 GTATCGATA--CTACCCTACAA
1 GTATCGATACCCTA-CCTAC-A
*
1727994 GGATCGATACCCTACCTACA
1 GTATCGATACCCTACCTACA
*
1728014 GTATTGATACCCTACCTACA
1 GTATCGATACCCTACCTACA
1728034 GTATCGATACCC
1 GTATCGATACCC
1728046 ATTGTATGAG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
20 38 0.83
21 5 0.11
22 3 0.07
ACGTcount: A:0.31, C:0.32, G:0.12, T:0.25
Consensus pattern (20 bp):
GTATCGATACCCTACCTACA
Found at i:1731939 original size:20 final size:20
Alignment explanation
Indices: 1731910--1731955 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
1731900 ATCAACCATC
*
1731910 GTCTGCTATGATCTTAAGTT
1 GTCTGGTATGATCTTAAGTT
1731930 GTCTGGTATGATCTTAAGTT
1 GTCTGGTATGATCTTAAGTT
1731950 GTCTGG
1 GTCTGG
1731956 CTTTGTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.17, C:0.13, G:0.26, T:0.43
Consensus pattern (20 bp):
GTCTGGTATGATCTTAAGTT
Found at i:1737643 original size:138 final size:138
Alignment explanation
Indices: 1737395--1737672 Score: 556
Period size: 138 Copynumber: 2.0 Consensus size: 138
1737385 TTATGACGTA
1737395 TAAAGTTGTATCCACAAGTGATATATTTTTATGAAACAATGTCCTTAGTAAAGACGTAAGTATTG
1 TAAAGTTGTATCCACAAGTGATATATTTTTATGAAACAATGTCCTTAGTAAAGACGTAAGTATTG
1737460 ACACAATCAAGATTAAGATGTTCGATAGGATTGTTCAAACACTTGGTAATGTGAGACATGTTCTA
66 ACACAATCAAGATTAAGATGTTCGATAGGATTGTTCAAACACTTGGTAATGTGAGACATGTTCTA
1737525 GATTTGAG
131 GATTTGAG
1737533 TAAAGTTGTATCCACAAGTGATATATTTTTATGAAACAATGTCCTTAGTAAAGACGTAAGTATTG
1 TAAAGTTGTATCCACAAGTGATATATTTTTATGAAACAATGTCCTTAGTAAAGACGTAAGTATTG
1737598 ACACAATCAAGATTAAGATGTTCGATAGGATTGTTCAAACACTTGGTAATGTGAGACATGTTCTA
66 ACACAATCAAGATTAAGATGTTCGATAGGATTGTTCAAACACTTGGTAATGTGAGACATGTTCTA
1737663 GATTTGAG
131 GATTTGAG
1737671 TA
1 TA
1737673 GAATTCTAAT
Statistics
Matches: 140, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
138 140 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (138 bp):
TAAAGTTGTATCCACAAGTGATATATTTTTATGAAACAATGTCCTTAGTAAAGACGTAAGTATTG
ACACAATCAAGATTAAGATGTTCGATAGGATTGTTCAAACACTTGGTAATGTGAGACATGTTCTA
GATTTGAG
Found at i:1738995 original size:20 final size:19
Alignment explanation
Indices: 1738955--1738992 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
1738945 AGAATGAACA
1738955 TAATCAATAAAATAATTAAT
1 TAATCAATAAAAT-ATTAAT
1738975 TAATCAAATAAAAT-TTAA
1 TAATC-AATAAAATATTAA
1738993 ATTTTAGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 5 0.29
21 8 0.47
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (19 bp):
TAATCAATAAAATATTAAT
Found at i:1741423 original size:21 final size:21
Alignment explanation
Indices: 1741372--1741424 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
1741362 ATTATGACTA
1741372 TCGCAATGCGATTTTACAATT
1 TCGCAATGCGATTTTACAATT
** *
1741393 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-ACAATT
1741414 TCGCAATGCGA
1 TCGCAATGCGA
1741425 ATAAGTAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTACAATT
Found at i:1741439 original size:20 final size:21
Alignment explanation
Indices: 1741414--1741465 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
1741404 TTTTCCCAAT
*
1741414 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
**
1741434 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTAAGAAAA
1741455 TCGCAATGCGA
1 TCGCAATGCGA
1741466 TACTGACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:1741479 original size:20 final size:20
Alignment explanation
Indices: 1741454--1741544 Score: 76
Period size: 21 Copynumber: 4.5 Consensus size: 20
1741444 AATTTGGAAA
*
1741454 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
1741474 ATCGCAACGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
1741495 ATCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * *
1741515 TTTGCAACCGTGATTCTGACT
1 ATCGCAA-CGCGATACTGACT
*
1741536 TTCGCAACG
1 ATCGCAACG
1741545 AGATTCTGAA
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
19 2 0.04
20 21 0.37
21 32 0.56
22 2 0.04
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:1741551 original size:20 final size:20
Alignment explanation
Indices: 1741496--1741553 Score: 71
Period size: 21 Copynumber: 2.9 Consensus size: 20
1741486 TAATACAAAA
* *
1741496 TCGCAACGCGATACTGACTT
1 TCGCAACGAGATTCTGACTT
* *
1741516 TTGCAACCGTGATTCTGACTT
1 TCGCAA-CGAGATTCTGACTT
1741537 TCGCAACGAGATTCTGA
1 TCGCAACGAGATTCTGA
1741554 AAATCGAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (20 bp):
TCGCAACGAGATTCTGACTT
Found at i:1741801 original size:20 final size:20
Alignment explanation
Indices: 1741776--1741875 Score: 191
Period size: 20 Copynumber: 5.0 Consensus size: 20
1741766 CAACGAGGAA
*
1741776 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGGCT
1741796 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
1741816 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
1741836 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
1741856 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
1741876 GCAACGATCG
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
20 79 1.00
ACGTcount: A:0.36, C:0.25, G:0.24, T:0.15
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGGCT
Found at i:1741945 original size:33 final size:33
Alignment explanation
Indices: 1741896--1741967 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
1741886 CAATTGCGCA
1741896 TTGCGA-TTCTCGTTGCGATAGCCA-TTTCGCG
1 TTGCGATTTCTCGTTGCGATAGCCAGTTTCGCG
* *
1741927 TTGCGATTCTCTCGTTGCGATAGTCAGTTTCGTG
1 TTGCGATT-TCTCGTTGCGATAGCCAGTTTCGCG
1741961 TTGCGAT
1 TTGCGAT
1741968 AGTCTGTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
31 6 0.17
32 1 0.03
33 16 0.44
34 13 0.36
ACGTcount: A:0.12, C:0.22, G:0.26, T:0.39
Consensus pattern (33 bp):
TTGCGATTTCTCGTTGCGATAGCCAGTTTCGCG
Found at i:1743561 original size:41 final size:42
Alignment explanation
Indices: 1743516--1743606 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
1743506 CCTCTTCAAC
*
1743516 GATGACAGTGGCCTCTTGAACG-GTGGGGGGGACTCTTGAGG
1 GATGACAGTGGCCTCTTGAACGAGTGGAGGGGACTCTTGAGG
* *
1743557 GATGATAGTGGCCTCTTGAACGATTGGAGGGGACTCTTGAGG
1 GATGACAGTGGCCTCTTGAACGAGTGGAGGGGACTCTTGAGG
1743599 GATGACAG
1 GATGACAG
1743607 GTGAGTCGGG
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 21 0.47
42 24 0.53
ACGTcount: A:0.21, C:0.15, G:0.41, T:0.23
Consensus pattern (42 bp):
GATGACAGTGGCCTCTTGAACGAGTGGAGGGGACTCTTGAGG
Found at i:1743970 original size:20 final size:20
Alignment explanation
Indices: 1743945--1743997 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
1743935 GAAGGATAGT
*
1743945 TTACTTTCGCAACACGAAAC
1 TTACTTTCGCAACACGAAAA
*
1743965 TTACTTTCGCAACGCGAAAA
1 TTACTTTCGCAACACGAAAA
* *
1743985 TGACTATCGCAAC
1 TTACTTTCGCAAC
1743998 GCGGAAATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (20 bp):
TTACTTTCGCAACACGAAAA
Found at i:1743998 original size:20 final size:20
Alignment explanation
Indices: 1743951--1744057 Score: 108
Period size: 20 Copynumber: 5.4 Consensus size: 20
1743941 TAGTTTACTT
* * * *
1743951 TCGCAACACGAAACTTACTT
1 TCGCAACGCGAAAATGACTA
1743971 TCGCAACGCGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
* *
1743991 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGAAAATGACTA
* *
1744011 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGAAAATGACTA
* **
1744031 TCGCAATGCG-AAATGAAAA
1 TCGCAACGCGAAAATGACTA
1744050 TCGCAACG
1 TCGCAACG
1744058 AAAAAATCGC
Statistics
Matches: 76, Mismatches: 11, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
19 13 0.17
20 63 0.83
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.17
Consensus pattern (20 bp):
TCGCAACGCGAAAATGACTA
Found at i:1744052 original size:19 final size:19
Alignment explanation
Indices: 1744030--1744088 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
1744020 GGAAATGGCT
1744030 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
1744049 ATCGCAA--CG-AA--AAA
1 ATCGCAATGCGAAATGAAA
*
1744063 ATCGCAATGTGAAATGAAA
1 ATCGCAATGCGAAATGAAA
1744082 ATCGCAA
1 ATCGCAA
1744089 CGACAAAATC
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
14 10 0.29
16 3 0.09
17 4 0.12
19 17 0.50
ACGTcount: A:0.49, C:0.17, G:0.19, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:1744065 original size:14 final size:14
Alignment explanation
Indices: 1744046--1744104 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
1744036 ATGCGAAATG
1744046 AAAATCGCAACGAA
1 AAAATCGCAACGAA
*
1744060 AAAATCGCAATGTGAAA
1 AAAATCGCAA--CG-AA
*
1744077 TGAAAATCGCAACGAC
1 --AAAATCGCAACGAA
1744093 AAAATCGCAACG
1 AAAATCGCAACG
1744105 CGAAACACAA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
14 22 0.59
16 2 0.05
17 3 0.08
19 10 0.27
ACGTcount: A:0.51, C:0.20, G:0.17, T:0.12
Consensus pattern (14 bp):
AAAATCGCAACGAA
Found at i:1744120 original size:33 final size:33
Alignment explanation
Indices: 1744030--1744109 Score: 133
Period size: 33 Copynumber: 2.4 Consensus size: 33
1744020 GGAAATGGCT
1744030 ATCGCAATGCGAAATGAAAATCGCAACGAAAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAAAAA
* *
1744063 ATCGCAATGTGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAAAAA
*
1744096 ATCGCAACGCGAAA
1 ATCGCAATGCGAAA
1744110 CACAAATCGC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.49, C:0.20, G:0.19, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAAAAA
Found at i:1744143 original size:19 final size:19
Alignment explanation
Indices: 1744118--1744168 Score: 84
Period size: 19 Copynumber: 2.7 Consensus size: 19
1744108 AACACAAATC
1744118 GCATTGCGATTTTCATTTA
1 GCATTGCGATTTTCATTTA
* *
1744137 GCGTTGCGATTTTCATTTT
1 GCATTGCGATTTTCATTTA
1744156 GCATTGCGATTTT
1 GCATTGCGATTTT
1744169 GTCGTTGTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.16, C:0.16, G:0.20, T:0.49
Consensus pattern (19 bp):
GCATTGCGATTTTCATTTA
Found at i:1744235 original size:20 final size:20
Alignment explanation
Indices: 1744185--1744237 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
1744175 GTGATTTTCA
1744185 TTTCGTATTGCGATAGCCAT
1 TTTCGTATTGCGATAGCCAT
* * *
1744205 TTCCGCATTGCGATAGTCAT
1 TTTCGTATTGCGATAGCCAT
*
1744225 TTTCGTGTTGCGA
1 TTTCGTATTGCGA
1744238 AAGTAAACTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.40
Consensus pattern (20 bp):
TTTCGTATTGCGATAGCCAT
Found at i:1744772 original size:18 final size:18
Alignment explanation
Indices: 1744749--1744796 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
1744739 CGGGTCGATC
*
1744749 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTAGGTG
*
1744767 AGGTGATAGCTCTAGGTG
1 AGGTGATGGCTCTAGGTG
1744785 AGGTGATGGCTC
1 AGGTGATGGCTC
1744797 CCAAAGTGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.17, C:0.12, G:0.44, T:0.27
Consensus pattern (18 bp):
AGGTGATGGCTCTAGGTG
Found at i:1746166 original size:20 final size:20
Alignment explanation
Indices: 1746118--1746160 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
1746108 AATAATTTCT
* *
1746118 GAAAATGAAAATCGCAACAC
1 GAAAATGACAATCGCAACGC
1746138 GAAAATGACAATCGCAACGC
1 GAAAATGACAATCGCAACGC
1746158 GAA
1 GAA
1746161 TTTGACTATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.51, C:0.21, G:0.19, T:0.09
Consensus pattern (20 bp):
GAAAATGACAATCGCAACGC
Found at i:1746684 original size:20 final size:20
Alignment explanation
Indices: 1746655--1746727 Score: 119
Period size: 20 Copynumber: 3.6 Consensus size: 20
1746645 GATTATGTAT
*
1746655 TATCTCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
* *
1746675 TATCGAGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
1746695 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
1746715 TATCGCGTTGCGA
1 TATCGCGTTGCGA
1746728 TTTTGTATTA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:1751379 original size:21 final size:21
Alignment explanation
Indices: 1751354--1751416 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
1751344 AGTCGAGGGT
* *
1751354 TATATGAGGTCCTTTGGGATA
1 TATATGAGGTCCTTAGGGACA
* *
1751375 TATATGAGGTCCTTCGAGACA
1 TATATGAGGTCCTTAGGGACA
*
1751396 TAAATGAGGTCCTTAGGGACA
1 TATATGAGGTCCTTAGGGACA
1751417 AATTTTATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (21 bp):
TATATGAGGTCCTTAGGGACA
Found at i:1757630 original size:20 final size:21
Alignment explanation
Indices: 1757595--1757646 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
1757585 GTTCAAGGGC
1757595 TATCGATACC-TAAAGGTCA-A
1 TATCGATACCATAAAGG-CATA
*
1757615 TATCGATACCAT-AAGGCATG
1 TATCGATACCATAAAGGCATA
1757635 TATCGATACCAT
1 TATCGATACCAT
1757647 TTTGAAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 2 0.07
20 26 0.90
21 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (21 bp):
TATCGATACCATAAAGGCATA
Found at i:1758403 original size:21 final size:21
Alignment explanation
Indices: 1758343--1758405 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
1758333 AGTCGAAGGT
*
1758343 TATATGAGGTCCTTCGAGACA
1 TATATGAGGTCCTTCGGGACA
* *
1758364 TATACGAGGTTCTTCGGGACA
1 TATATGAGGTCCTTCGGGACA
*
1758385 TATATGAGGTCCTTAGGGACA
1 TATATGAGGTCCTTCGGGACA
1758406 AATTTTATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (21 bp):
TATATGAGGTCCTTCGGGACA
Found at i:1760488 original size:18 final size:18
Alignment explanation
Indices: 1760467--1760552 Score: 109
Period size: 18 Copynumber: 4.6 Consensus size: 18
1760457 TTTGTCTTGT
*
1760467 AGGACCACTATGTCCTGA
1 AGGACCACTATGTCCCGA
1760485 AGGACCACTGTATATGTCCCGA
1 AGGACCAC----TATGTCCCGA
*
1760507 AGGACCACCATGTCCCGA
1 AGGACCACTATGTCCCGA
*
1760525 AAGACCACTATGTCCCGA
1 AGGACCACTATGTCCCGA
1760543 AGGACCACTA
1 AGGACCACTA
1760553 ATAATCCCTC
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
18 42 0.71
22 17 0.29
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.17
Consensus pattern (18 bp):
AGGACCACTATGTCCCGA
Found at i:1761537 original size:19 final size:19
Alignment explanation
Indices: 1761513--1761583 Score: 142
Period size: 19 Copynumber: 3.7 Consensus size: 19
1761503 CTTAAGGGGG
1761513 TGCATCGATGCACTCCTTA
1 TGCATCGATGCACTCCTTA
1761532 TGCATCGATGCACTCCTTA
1 TGCATCGATGCACTCCTTA
1761551 TGCATCGATGCACTCCTTA
1 TGCATCGATGCACTCCTTA
1761570 TGCATCGATGCACT
1 TGCATCGATGCACT
1761584 AATTGTATTC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 52 1.00
ACGTcount: A:0.21, C:0.31, G:0.17, T:0.31
Consensus pattern (19 bp):
TGCATCGATGCACTCCTTA
Found at i:1764548 original size:18 final size:18
Alignment explanation
Indices: 1764533--1764599 Score: 73
Period size: 18 Copynumber: 3.5 Consensus size: 18
1764523 TTTGTCCTAT
1764533 AGGACCACTATGTCCTGA
1 AGGACCACTATGTCCTGA
*
1764551 AGGACCACTGTATATGTCCCGA
1 AGGACCAC----TATGTCCTGA
1764573 AGGACCACTATGT-CTCGA
1 AGGACCACTATGTCCT-GA
1764591 AGGACCACT
1 AGGACCACT
1764600 GTTAATCCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
17 1 0.02
18 24 0.57
22 17 0.40
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (18 bp):
AGGACCACTATGTCCTGA
Found at i:1767203 original size:20 final size:20
Alignment explanation
Indices: 1767157--1767205 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
1767147 GATTCAAGTG
*
1767157 GTATCGATACCAAGAGGGGA
1 GTATCGATACCAAGAGGAGA
* * *
1767177 GTGTCGATACCATGAGGATA
1 GTATCGATACCAAGAGGAGA
1767197 GTATCGATA
1 GTATCGATA
1767206 TCATTGAGCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (20 bp):
GTATCGATACCAAGAGGAGA
Found at i:1767281 original size:22 final size:19
Alignment explanation
Indices: 1767231--1767284 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 19
1767221 TGCAAAAATG
*
1767231 GTATCGATACCGTAATAGA
1 GTATCGATACCATAATAGA
*
1767250 GTATCAATACCATAGTATAGTA
1 GTATCGATACCATA--ATAG-A
1767272 GTATCGATACCAT
1 GTATCGATACCAT
1767285 GTGGATCGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 12 0.41
21 4 0.14
22 13 0.45
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (19 bp):
GTATCGATACCATAATAGA
Found at i:1767743 original size:20 final size:20
Alignment explanation
Indices: 1767718--1768261 Score: 172
Period size: 20 Copynumber: 23.6 Consensus size: 20
1767708 CTAAAAAAAT
*
1767718 GCATGAAATGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
*
1767738 GCATGAAATGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
*
1767758 GCATGAAAGGATGCCATAACTAAAAAT
1 GCATGAAAGGATG-CAT---T---AAG
*
1767785 GCATGAAAGAATGCATTAAG
1 GCATGAAAGGATGCATTAAG
* * *
1767805 ACATTAAAGGATGCCATAACTAAAAAT
1 GCATGAAAGGATG-CAT---T---AAG
*
1767832 GCATGAAAGAATGCATTAAG
1 GCATGAAAGGATGCATTAAG
1767852 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
*
1767872 GCATGAAAGGATGCCATAACTAAAAAT
1 GCATGAAAGGATG-CAT---T---AAG
* *
1767899 GCATGAAAAGATGTCATAATTGAAAAT
1 GCATGAAAGGATG-C---ATT---AAG
1767926 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
*
1767946 GCATGAAAGGATGCCATAACTAAAAAAAAT
1 GCATGAAAGGATG-CAT---T------AAG
1767976 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
* *
1767996 GCATGAAAGGATACCATAACTAAAAAT
1 GCATGAAAGGAT-GCAT---T---AAG
*
1768023 GCATGAAATGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
* * *
1768043 GCATGAAAAGATGCCAAAACTAAAAAT
1 GCATGAAAGGATG-C---A-T--TAAG
*
1768070 GCATGAAAGGATGACATAACTAAAAAT
1 GCATGAAAGGATG-CAT---T---AAG
* *
1768097 GCATGAAATGATGTATTAAG
1 GCATGAAAGGATGCATTAAG
*
1768117 GCATGAAAGGATGTCATAACTACAAAT
1 GCATGAAAGGATG-CAT---T---AAG
* *
1768144 ACATGAAATGA-GACATTAAG
1 GCATGAAAGGATG-CATTAAG
*
1768164 GCATGAAAGGATGCAATAACTAAAAAT
1 GCATGAAAGGATGC-AT---T---AAG
*
1768191 CCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
*
1768211 GTATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
1768231 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
1768251 GCATGAAAGGA
1 GCATGAAAGGA
1768262 AGTCATAACT
Statistics
Matches: 406, Mismatches: 51, Indels: 134
0.69 0.09 0.23
Matches are distributed among these distances:
20 197 0.49
21 21 0.05
23 10 0.02
24 10 0.02
25 1 0.00
26 19 0.05
27 128 0.32
29 3 0.01
30 17 0.04
ACGTcount: A:0.46, C:0.11, G:0.22, T:0.21
Consensus pattern (20 bp):
GCATGAAAGGATGCATTAAG
Found at i:1767792 original size:47 final size:47
Alignment explanation
Indices: 1767738--1768082 Score: 416
Period size: 47 Copynumber: 7.3 Consensus size: 47
1767728 ATGCATTAAG
*
1767738 GCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAAT
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAAT
* * *
1767785 GCATGAAAGAATGCATTAAGACATTAAAGGATGCCATAACTAAAAAT
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAAT
* *
1767832 GCATGAAAGAATGCATTAAGGCATGAAAGGATG-CAT---T---AAG
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAAT
* * * * *
1767872 GCATGAAAGGATGCCATAACTAAAAATGCATGAAAAGATGTCATAATTGAAAAT
1 GCATGAAAGGATG-CAT---T---AAGGCATGAAAGGATGCCATAACTAAAAAT
1767926 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAAAAAT
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACT---AAAAAT
*
1767976 GCATGAAAGGATGCATTAAGGCATGAAAGGATACCATAACTAAAAAT
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAAT
* * *
1768023 GCATGAAATGATGCATTAAGGCATGAAAAGATGCCAAAACTAAAAAT
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAAT
1768070 GCATGAAAGGATG
1 GCATGAAAGGATG
1768083 ACATAACTAA
Statistics
Matches: 259, Mismatches: 22, Indels: 34
0.82 0.07 0.11
Matches are distributed among these distances:
40 14 0.05
41 3 0.01
43 1 0.00
44 1 0.00
46 3 0.01
47 169 0.65
48 3 0.01
50 46 0.18
51 1 0.00
53 3 0.01
54 15 0.06
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.20
Consensus pattern (47 bp):
GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAAT
Found at i:1767856 original size:67 final size:67
Alignment explanation
Indices: 1767785--1768007 Score: 295
Period size: 67 Copynumber: 3.2 Consensus size: 67
1767775 AACTAAAAAT
* * *
1767785 GCATGAAAGAATGCATTAAGACATTAAAGGATGCCATAACTAAAAATGCATGAAAGAATGCATTA
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAATGCATGAAAGAATGCATTA
1767850 AG
66 AG
1767852 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAATGCATGAAA-AGATGTCAT
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAATGCATGAAAGA-ATG-C--
*
1767916 AATTGAAAAT
62 -ATT---AAG
*
1767926 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAAAAATGCATGAAAGGATGCA
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACT---AAAAATGCATGAAAGAATGCA
1767991 TTAAG
63 TTAAG
1767996 GCATGAAAGGAT
1 GCATGAAAGGAT
1768008 ACCATAACTA
Statistics
Matches: 138, Mismatches: 6, Indels: 21
0.84 0.04 0.13
Matches are distributed among these distances:
66 1 0.01
67 55 0.40
68 1 0.01
70 14 0.10
71 3 0.02
73 3 0.02
74 43 0.31
76 1 0.01
77 17 0.12
ACGTcount: A:0.46, C:0.11, G:0.22, T:0.20
Consensus pattern (67 bp):
GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAATGCATGAAAGAATGCATTA
AG
Found at i:1767902 original size:27 final size:27
Alignment explanation
Indices: 1767872--1768036 Score: 133
Period size: 27 Copynumber: 6.5 Consensus size: 27
1767862 ATGCATTAAG
1767872 GCATGAAAGGATGCCATAACTAAAAAT
1 GCATGAAAGGATGCCATAACTAAAAAT
* * * *
1767899 GCATGAAAAGATGTCATAATTGAAAAT
1 GCATGAAAGGATGCCATAACTAAAAAT
*
1767926 GCATGAAAGGATG-CAT---T---AAG
1 GCATGAAAGGATGCCATAACTAAAAAT
1767946 GCATGAAAGGATGCCATAACTAAAAAAAAT
1 GCATGAAAGGATGCCATAACT---AAAAAT
*
1767976 GCATGAAAGGATG-CAT---T---AAG
1 GCATGAAAGGATGCCATAACTAAAAAT
*
1767996 GCATGAAAGGATACCATAACTAAAAAT
1 GCATGAAAGGATGCCATAACTAAAAAT
*
1768023 GCATGAAATGATGC
1 GCATGAAAGGATGC
1768037 ATTAAGGCAT
Statistics
Matches: 109, Mismatches: 12, Indels: 34
0.70 0.08 0.22
Matches are distributed among these distances:
20 29 0.27
21 6 0.06
23 1 0.01
24 2 0.02
26 4 0.04
27 49 0.45
29 3 0.03
30 15 0.14
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.20
Consensus pattern (27 bp):
GCATGAAAGGATGCCATAACTAAAAAT
Found at i:1768040 original size:171 final size:168
Alignment explanation
Indices: 1767852--1768224 Score: 550
Period size: 171 Copynumber: 2.2 Consensus size: 168
1767842 ATGCATTAAG
* *
1767852 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAATGCATGAAAAGATGTCATA
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCAAAACTAAAAATGCATGAAAAGATGACATA
* * *
1767917 ATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAAAAATGCATGA
66 ACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACT---AAAAATACATGA
*
1767982 AAGGATG-CATTAAGGCATGAAAGGATACCATAACTAAAAAT
128 AAGGA-GACATTAAGGCATGAAAGGATACAATAACTAAAAAT
* * *
1768023 GCATGAAATGATGCATTAAGGCATGAAAAGATGCCAAAACTAAAAATGCATGAAAGGATGACATA
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCAAAACTAAAAATGCATGAAAAGATGACATA
* * * * *
1768088 ACTAAAAATGCATGAAATGATGTATTAAGGCATGAAAGGATGTCATAACTACAAATACATGAAAT
66 ACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAATACATGAAAG
*
1768153 GAGACATTAAGGCATGAAAGGATGCAATAACTAAAAAT
131 GAGACATTAAGGCATGAAAGGATACAATAACTAAAAAT
* *
1768191 CCATGAAAGGATGCATTAAGGTATGAAAGGATGC
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGC
1768225 ATTAAGGCAT
Statistics
Matches: 182, Mismatches: 19, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
167 1 0.01
168 76 0.42
171 105 0.58
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.20
Consensus pattern (168 bp):
GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCAAAACTAAAAATGCATGAAAAGATGACATA
ACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAATACATGAAAG
GAGACATTAAGGCATGAAAGGATACAATAACTAAAAAT
Found at i:1768082 original size:27 final size:27
Alignment explanation
Indices: 1768043--1768109 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
1768033 ATGCATTAAG
*
1768043 GCATGAAAAGATGCCAAAACTAAAAAT
1 GCATGAAAAGATGACAAAACTAAAAAT
* *
1768070 GCATGAAAGGATGACATAACTAAAAAT
1 GCATGAAAAGATGACAAAACTAAAAAT
*
1768097 GCATGAAATGATG
1 GCATGAAAAGATG
1768110 TATTAAGGCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.51, C:0.12, G:0.19, T:0.18
Consensus pattern (27 bp):
GCATGAAAAGATGACAAAACTAAAAAT
Found at i:1768088 original size:74 final size:74
Alignment explanation
Indices: 1767996--1768159 Score: 242
Period size: 74 Copynumber: 2.2 Consensus size: 74
1767986 ATGCATTAAG
1767996 GCATGAAAGGAT-ACCATAACTAAAAATGCATGAAATGATGCATTAAGGCATGAAAAGATGCCAA
1 GCATGAAAGGATGA-CATAACTAAAAATGCATGAAATGATGCATTAAGGCATGAAAAGATGCCAA
1768060 AACTAAAAAT
65 AACTAAAAAT
* * * *
1768070 GCATGAAAGGATGACATAACTAAAAATGCATGAAATGATGTATTAAGGCATGAAAGGATGTCATA
1 GCATGAAAGGATGACATAACTAAAAATGCATGAAATGATGCATTAAGGCATGAAAAGATGCCAAA
*
1768135 ACTACAAAT
66 ACTAAAAAT
* *
1768144 ACATGAAATGA-GACAT
1 GCATGAAAGGATGACAT
1768160 TAAGGCATGA
Statistics
Matches: 82, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
73 5 0.06
74 76 0.93
75 1 0.01
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (74 bp):
GCATGAAAGGATGACATAACTAAAAATGCATGAAATGATGCATTAAGGCATGAAAAGATGCCAAA
ACTAAAAAT
Found at i:1768121 original size:47 final size:46
Alignment explanation
Indices: 1768070--1768279 Score: 245
Period size: 47 Copynumber: 4.6 Consensus size: 46
1768060 AACTAAAAAT
* *
1768070 GCATGAAAGGATGACATAACTAAAAATGCATGAAATGATGTATTAAG
1 GCATGAAAGGATG-CATAACTAAAAATGCATGAAAGGATGCATTAAG
* * *
1768117 GCATGAAAGGATGTCATAACTACAAATACATGAAATGA-GACATTAAG
1 GCATGAAAGGATG-CATAACTAAAAATGCATGAAAGGATG-CATTAAG
*
1768164 GCATGAAAGGATGCAATAACTAAAAATCCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGC-ATAACTAAAAATGCATGAAAGGATGCATTAAG
* *
1768211 GTATGAAAGGATGCAT---T---AAGGCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATAACTAAAAATGCATGAAAGGATGCATTAAG
*
1768251 GCATGAAAGGAAGTCATAACTAAAAATGC
1 GCATGAAAGGATG-CATAACTAAAAATGC
1768280 TATAAGTGAA
Statistics
Matches: 140, Mismatches: 13, Indels: 20
0.81 0.08 0.12
Matches are distributed among these distances:
40 32 0.23
41 3 0.02
43 1 0.01
44 1 0.01
46 4 0.03
47 98 0.70
48 1 0.01
ACGTcount: A:0.46, C:0.11, G:0.22, T:0.21
Consensus pattern (46 bp):
GCATGAAAGGATGCATAACTAAAAATGCATGAAAGGATGCATTAAG
Found at i:1768574 original size:20 final size:20
Alignment explanation
Indices: 1768549--1768594 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
1768539 TGTAAACTAT
1768549 AGAGTTTATAATGAATTGAG
1 AGAGTTTATAATGAATTGAG
1768569 AGAGTTTATAATGAATTGAG
1 AGAGTTTATAATGAATTGAG
1768589 AGAGTT
1 AGAGTT
1768595 CATTGATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.26, T:0.35
Consensus pattern (20 bp):
AGAGTTTATAATGAATTGAG
Found at i:1768730 original size:68 final size:68
Alignment explanation
Indices: 1768651--1768923 Score: 375
Period size: 68 Copynumber: 4.0 Consensus size: 68
1768641 CAAGATTAAT
* *
1768651 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAGTGCCTT
1 GGCCTAACTGTGCATTTAACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAGTGCCTT
1768716 TGA
66 TGA
* * ** *
1768719 GGCCTAACTGTGCATTTAACAGAAAGGTGTCAATCATGCCTGTTAGATAAAAGACTCAGTGCCTT
1 GGCCTAACTGTGCATTTAACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAGTGCCTT
1768784 TGA
66 TGA
* * * * *
1768787 TGCCTAAATGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAAGATAAGTGCCTT
1 GGCCTAACTGTGCATTTAACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAGTGCCTT
1768852 TGA
66 TGA
* * * * * * *
1768855 GGCATAACTGTGCATTTAACAGGAATGTGTCAATGATGCCAGTTAGTTGAAAGGTTAAATGCTTT
1 GGCCTAACTGTGCATTTAACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAGTGCCTT
1768920 TGA
66 TGA
1768923 G
1 G
1768924 TAAAAGACTA
Statistics
Matches: 177, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
68 177 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (68 bp):
GGCCTAACTGTGCATTTAACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAGTGCCTT
TGA
Found at i:1768900 original size:136 final size:136
Alignment explanation
Indices: 1768652--1768900 Score: 417
Period size: 136 Copynumber: 1.8 Consensus size: 136
1768642 AAGATTAATG
* * * *
1768652 GCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAGTGCCTTT
1 GCCTAAATGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAAGATAAGTGCCTTT
* *
1768717 GAGGCCTAACTGTGCATTTAACAGAAAGGTGTCAATCATGCCTGTTAGATAAAAGACTCAGTGCC
66 GAGGCATAACTGTGCATTTAACAGAAAGGTGTCAATCATGCCAGTTAGATAAAAGACTCAGTGCC
1768782 TTTGAT
131 TTTGAT
1768788 GCCTAAATGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAAGATAAGTGCCTTT
1 GCCTAAATGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAAGATAAGTGCCTTT
* * *
1768853 GAGGCATAACTGTGCATTTAACAGGAATGTGTCAATGATGCCAGTTAG
66 GAGGCATAACTGTGCATTTAACAGAAAGGTGTCAATCATGCCAGTTAG
1768901 TTGAAAGGTT
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
136 104 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (136 bp):
GCCTAAATGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAAGATAAGTGCCTTT
GAGGCATAACTGTGCATTTAACAGAAAGGTGTCAATCATGCCAGTTAGATAAAAGACTCAGTGCC
TTTGAT
Found at i:1770566 original size:2 final size:2
Alignment explanation
Indices: 1770559--1770597 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
1770549 TGATGTCATA
1770559 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1770598 GCTTTTATGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1772771 original size:20 final size:19
Alignment explanation
Indices: 1772716--1772771 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
1772706 ACCGATTCAA
*
1772716 GTGGTATCGATACCAAGAG
1 GTGGTATCGATACCATGAG
*
1772735 GGGAGTATCGATACCATGAG
1 GTG-GTATCGATACCATGAG
1772755 GATGGTATCGATACCAT
1 G-TGGTATCGATACCAT
1772772 TGAGCATAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 2 0.06
20 29 0.91
21 1 0.03
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.23
Consensus pattern (19 bp):
GTGGTATCGATACCATGAG
Found at i:1772822 original size:19 final size:21
Alignment explanation
Indices: 1772794--1772846 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 21
1772784 GAAAAAATGA
* *
1772794 TATCGGTACCTTA-ATAG-AG
1 TATCGATACCATAGATAGTAG
1772813 TATCGATACCATAGTATAGTAG
1 TATCGATACCATAG-ATAGTAG
1772835 TATCGATACCAT
1 TATCGATACCAT
1772847 GTGGGGTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 11 0.38
21 4 0.14
22 14 0.48
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (21 bp):
TATCGATACCATAGATAGTAG
Found at i:1773343 original size:47 final size:47
Alignment explanation
Indices: 1773261--1774128 Score: 1245
Period size: 47 Copynumber: 18.1 Consensus size: 47
1773251 GCTCTAAACC
*
1773261 GATGCCATAACTAAAACAATGCATGAAATGATGCATTAAGGCATGAAAG
1 GATGCCATAACT-AAA-AATGCATGAAAGGATGCATTAAGGCATGAAAG
* * * *
1773310 GATGTCATAACTAAAAATACATTAAATGATGCATTAAGGCATGAAAG
1 GATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
*
1773357 GATGACATAACTAAAAAAATGCATGAAATGG-TGCATTAAGGCATGAAAG
1 GATGCCATAACT--AAAAATGCATGAAA-GGATGCATTAAGGCATGAAAG
* * * *
1773406 GATGTCATAACTAAAAATACATTAAATGATGCATTAAGGCATGAAAG
1 GATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
* *
1773453 GATGACATAACTAAAAAAGCATGAAAGGATGTCATAACTAAAAATGG-ATGAAAG
1 GATGCCATAACTAAAAATGCATGAAAGGATG-CAT---T---AA-GGCATGAAAG
*
1773507 GATGTCATAACTAAAAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
1 GATGCCATAACT---AAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
* * * * *
1773557 AATGCCATAACTAGAAGTGCATGAAATGATGTATTAAGGCATGAAAG
1 GATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
* *
1773604 GATGCCATAACTAAAAATGCATGAATGGATGCATTAAGGCATGAAAT
1 GATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
1773651 GATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
1 GATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
*
1773698 GATGCTATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
1 GATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
* * *
1773745 GATGTCATAACTAAAAATGCATGAAAGAATGCATTAAGGCATGAAAC
1 GATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
1773792 GATGCCATAACTAAAACAAATGCATGAAAGGATGCATTAAGGCATGAAAG
1 GATGCCATAACT--AA-AAATGCATGAAAGGATGCATTAAGGCATGAAAG
* * *
1773842 GATGCCATAACTAGAAATGCATGAAAGGTTGCATTAAGGCATGAAAT
1 GATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
* * *
1773889 GATGCCATAACTAAAAATGCATGAAATGATGCATTAAGGAAAGAAAG
1 GATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
1773936 GATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
1 GATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
* *
1773983 GATGCCATCACTAAAAATGCATGAAAGGATGCAATAAGGCATGAAAG
1 GATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
*
1774030 AATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
1 GATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
*
1774077 GATGCCATAACTAAAAATGCATGAAATGATGCATTAAGGCATGAAAG
1 GATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
1774124 GATGC
1 GATGC
1774129 ATTAAGGCAT
Statistics
Matches: 740, Mismatches: 60, Indels: 40
0.88 0.07 0.05
Matches are distributed among these distances:
46 1 0.00
47 568 0.77
48 7 0.01
49 56 0.08
50 63 0.09
51 1 0.00
53 1 0.00
54 20 0.03
55 2 0.00
56 3 0.00
57 18 0.02
ACGTcount: A:0.46, C:0.12, G:0.22, T:0.21
Consensus pattern (47 bp):
GATGCCATAACTAAAAATGCATGAAAGGATGCATTAAGGCATGAAAG
Found at i:1773980 original size:67 final size:67
Alignment explanation
Indices: 1773907--1774175 Score: 239
Period size: 67 Copynumber: 3.9 Consensus size: 67
1773897 AACTAAAAAT
*
1773907 GCATGAAATGATGCATTAAGGAAAGAAAGGATGCCATAACTAAAAATGCATGAAAGGATGCATTA
1 GCATGAAAGGATGCATTAAGGAAAGAAAGGATGCCATAACTAAAAATGCATGAAAGGATGCATTA
1773972 AG
66 AG
* * *
1773974 GCATGAAAGGATGCCATCACTAA-AAATGCATGAAAGGATG-C--AA-T---AAGGCATGAAAGA
1 GCATGAAAGGATG-CAT---TAAGGAA---A-GAAAGGATGCCATAACTAAAAATGCATGAAAGG
*
1774031 ATGCCATAACTAAAAAT
58 ATG-CAT---T---AAG
* * *
1774048 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAATGCATGAAATGATGCATTA
1 GCATGAAAGGATGCATTAAGGAAAGAAAGGATGCCATAACTAAAAATGCATGAAAGGATGCATTA
1774113 AG
66 AG
* * * *
1774115 GCATGAAAGGATGCATTAAGGCATGAAATGATGCCATAACTAAAAATGCATGAAATGATGC
1 GCATGAAAGGATGCATTAAGGAAAGAAAGGATGCCATAACTAAAAATGCATGAAAGGATGC
1774176 CATAAGTGAA
Statistics
Matches: 166, Mismatches: 13, Indels: 46
0.74 0.06 0.20
Matches are distributed among these distances:
67 97 0.58
68 7 0.04
70 9 0.05
71 8 0.05
73 8 0.05
74 37 0.22
ACGTcount: A:0.45, C:0.13, G:0.23, T:0.20
Consensus pattern (67 bp):
GCATGAAAGGATGCATTAAGGAAAGAAAGGATGCCATAACTAAAAATGCATGAAAGGATGCATTA
AG
Found at i:1774644 original size:68 final size:67
Alignment explanation
Indices: 1774548--1774794 Score: 307
Period size: 68 Copynumber: 3.6 Consensus size: 67
1774538 GCATTTGACA
*
1774548 GTGTCAATCATACCAATTAGATGAAAGGCTAAGTGCCTTTGAGGCCGAACTATGTATTTGACAGA
1 GTGTCAATCATACCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCC-AACTATGTATTTGACAGA
1774613 AAG
65 AAG
** * *
1774616 GTGTCAATCATGTCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTA-TATGTGCATTTGACAA
1 GTGTCAATCATACCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCAACTATGT--ATTTGACAG
*
1774680 AAAA
64 AAAG
* * * * * *
1774684 TTGTCAATCATGCTAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTTGACAGG
1 GTGTCAATCATACCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCC-AACTATGTATTTGACAGA
1774749 AAG
65 AAG
* * * *
1774752 GTGTCAATGATACCAGTTAGATGAAAGGTTAAATGCTTTTGAG
1 GTGTCAATCATACCAGTTAGATGAAAGGCTAAGTGCCTTTGAG
1774795 TAAAAGACTA
Statistics
Matches: 153, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
66 5 0.03
67 1 0.01
68 143 0.93
69 1 0.01
70 3 0.02
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.29
Consensus pattern (67 bp):
GTGTCAATCATACCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCAACTATGTATTTGACAGAA
AG
Found at i:1774793 original size:136 final size:136
Alignment explanation
Indices: 1774549--1774794 Score: 375
Period size: 136 Copynumber: 1.8 Consensus size: 136
1774539 CATTTGACAG
*
1774549 TGTCAATCATACCAATTAGATGAAAGGCTAAGTGCCTTTGAGGCCGAACTATGTATTTGACAGAA
1 TGTCAATCATACCAATTAGATGAAAGGCTAAGTGCCTTTGAGGCCGAACTATGCATTTGACAGAA
** *
1774614 AGGTGTCAATCATGTCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTATATGTGCATTTGACA
66 AGGTGTCAATCATACCAGTTAGATGAAAGGCTAAATGCCTTTGAGGCCTATATGTGCATTTGACA
1774679 AAAAAT
131 AAAAAT
* * * * * *
1774685 TGTCAATCATGCTAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTTGACAGGA
1 TGTCAATCATACCAATTAGATGAAAGGCTAAGTGCCTTTGAGGCCGAACTATGCATTTGACAGAA
* * *
1774750 AGGTGTCAATGATACCAGTTAGATGAAAGGTTAAATGCTTTTGAG
66 AGGTGTCAATCATACCAGTTAGATGAAAGGCTAAATGCCTTTGAG
1774795 TAAAAGACTA
Statistics
Matches: 97, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
136 97 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (136 bp):
TGTCAATCATACCAATTAGATGAAAGGCTAAGTGCCTTTGAGGCCGAACTATGCATTTGACAGAA
AGGTGTCAATCATACCAGTTAGATGAAAGGCTAAATGCCTTTGAGGCCTATATGTGCATTTGACA
AAAAAT
Found at i:1777201 original size:19 final size:19
Alignment explanation
Indices: 1777177--1777215 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
1777167 CTGACTTTGC
*
1777177 TAAATATTAATCAATCACT
1 TAAATACTAATCAATCACT
1777196 TAAATACTAATCAATCACT
1 TAAATACTAATCAATCACT
1777215 T
1 T
1777216 TTTACCATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (19 bp):
TAAATACTAATCAATCACT
Found at i:1779023 original size:60 final size:59
Alignment explanation
Indices: 1778887--1779033 Score: 179
Period size: 60 Copynumber: 2.5 Consensus size: 59
1778877 TGGAAGATCT
* * * * ** * *
1778887 AAAAGTTTAGGGACCAATTTAGAATGAGATTCATAGTTGGGGATGCAATTGGAATGTTT
1 AAAAGTTTAAGGACTAATTTAGAATGAGAGTCATAGTTGAGGATAAAATTGAAATGTTA
* *
1778946 AAAAGTTTGAGGACTAATTTAGAATGAGAGTCATAGTTTGAGTATAAAATTGAAATGTTA
1 AAAAGTTTAAGGACTAATTTAGAATGAGAGTCATAG-TTGAGGATAAAATTGAAATGTTA
1779006 AAAAGTTTAAGGACTAATTT-GAAATGAG
1 AAAAGTTTAAGGACTAATTTAG-AATGAG
1779034 GATAATAGTT
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
59 33 0.44
60 42 0.56
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (59 bp):
AAAAGTTTAAGGACTAATTTAGAATGAGAGTCATAGTTGAGGATAAAATTGAAATGTTA
Found at i:1779346 original size:31 final size:31
Alignment explanation
Indices: 1779311--1779381 Score: 133
Period size: 31 Copynumber: 2.3 Consensus size: 31
1779301 AAAAATATGA
1779311 TTAAATAAAAAGAATTATATTTTAGTTATTC
1 TTAAATAAAAAGAATTATATTTTAGTTATTC
*
1779342 TTAAATAAAAAGTATTATATTTTAGTTATTC
1 TTAAATAAAAAGAATTATATTTTAGTTATTC
1779373 TTAAATAAA
1 TTAAATAAA
1779382 TAAATAATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.45
Consensus pattern (31 bp):
TTAAATAAAAAGAATTATATTTTAGTTATTC
Found at i:1779730 original size:15 final size:15
Alignment explanation
Indices: 1779710--1779765 Score: 67
Period size: 15 Copynumber: 3.6 Consensus size: 15
1779700 GTACCGGTTT
1779710 CGGTTTTAAAAAAAC
1 CGGTTTTAAAAAAAC
*
1779725 CGGTTTTTTTAAAAAAC
1 CGG--TTTTAAAAAAAC
*
1779742 CGGTTATAAAAAAAC
1 CGGTTTTAAAAAAAC
*
1779757 CGATTTTAA
1 CGGTTTTAA
1779766 TATTCCAGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
15 20 0.59
17 14 0.41
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.32
Consensus pattern (15 bp):
CGGTTTTAAAAAAAC
Found at i:1779738 original size:17 final size:17
Alignment explanation
Indices: 1779713--1779763 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
1779703 CCGGTTTCGG
1779713 TTTTAAAAAAACCGGTT
1 TTTTAAAAAAACCGGTT
*
1779730 TTTTTAAAAAACCGG--
1 TTTTAAAAAAACCGGTT
* *
1779745 TTATAAAAAAACCGATT
1 TTTTAAAAAAACCGGTT
1779762 TT
1 TT
1779764 AATATTCCAG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 12 0.43
17 16 0.57
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (17 bp):
TTTTAAAAAAACCGGTT
Found at i:1779939 original size:21 final size:21
Alignment explanation
Indices: 1779910--1779966 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
1779900 TTTTACACTT
*
1779910 AGGGAACCGATTCCCTATGAG
1 AGGGTACCGATTCCCTATGAG
1779931 AGGGTACCGATTCCCTATGAG
1 AGGGTACCGATTCCCTATGAG
1779952 AGGGTACCGATTCCC
1 AGGGTACCGATTCCC
1779967 CCACGCTCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (21 bp):
AGGGTACCGATTCCCTATGAG
Found at i:1780183 original size:13 final size:13
Alignment explanation
Indices: 1780162--1780216 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
1780152 AAGTTCGATA
*
1780162 AATTCAAATACTT
1 AATTGAAATACTT
1780175 AATTGAAATACTT
1 AATTGAAATACTT
* *
1780188 AATT-AACTCAACAT
1 AATTGAAAT--ACTT
1780202 AATTGAAATACTT
1 AATTGAAATACTT
1780215 AA
1 AA
1780217 ATACTTCCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.35
Consensus pattern (13 bp):
AATTGAAATACTT
Found at i:1780298 original size:32 final size:33
Alignment explanation
Indices: 1780202--1780300 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
1780192 AACTCAACAT
* * *
1780202 AATTGAAATACTTAAATACTTCCAAGTTTGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1780235 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1780268 AATTCAAATACTTAAAAACTT-CAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1780300 A
1 A
1780301 TTGAAACAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 12 0.19
33 51 0.81
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.32
Consensus pattern (33 bp):
AATTCAAATACTTAAAAACTTCCAAGTTCGATA
Found at i:1780319 original size:21 final size:21
Alignment explanation
Indices: 1780295--1780334 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
1780285 ACTTCAAGTT
1780295 CGATAATTGAAACAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
*
1780316 CGATAATTGAAATAAAGTT
1 CGATAATTGAAACAAAGTT
1780335 ATAAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (21 bp):
CGATAATTGAAACAAAGTTTA
Found at i:1783871 original size:12 final size:10
Alignment explanation
Indices: 1783830--1783866 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
1783820 AAAATTCAAT
1783830 TTTTTATATA
1 TTTTTATATA
*
1783840 ATTTTATATA
1 TTTTTATATA
1783850 TTTTTATATA
1 TTTTTATATA
1783860 TTTTTAT
1 TTTTTAT
1783867 TTATAATATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTTATATA
Found at i:1787858 original size:30 final size:31
Alignment explanation
Indices: 1787824--1787903 Score: 85
Period size: 30 Copynumber: 2.6 Consensus size: 31
1787814 AAATTAATCC
*
1787824 TTTATTATTATTAT-TATTATTTATATAT-AT
1 TTTATTATTATCATATATT-TTTATATATCAT
* *
1787854 TTTATTAGTATCATATATTTTTATATTTCAT
1 TTTATTATTATCATATATTTTTATATATCAT
1787885 TTTATGTATTTAT-ATATAT
1 TTTAT-TA-TTATCATATAT
1787904 ACATTTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
30 20 0.48
31 11 0.26
32 8 0.19
33 3 0.07
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (31 bp):
TTTATTATTATCATATATTTTTATATATCAT
Found at i:1788227 original size:13 final size:14
Alignment explanation
Indices: 1788211--1788243 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
1788201 TTTGATTTTC
1788211 TATTTTATTT-ATT
1 TATTTTATTTCATT
1788224 TATTTTATTTCATT
1 TATTTTATTTCATT
*
1788238 CATTTT
1 TATTTT
1788244 TCTTTCTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (14 bp):
TATTTTATTTCATT
Found at i:1788242 original size:18 final size:17
Alignment explanation
Indices: 1788219--1788264 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
1788209 TCTATTTTAT
1788219 TTATTTATTTTATTTCA
1 TTATTTATTTTATTTCA
1788236 TTCATTT-TTCTT-TCTTCA
1 TT-ATTTATT-TTAT-TTCA
1788254 TTATTTATTTT
1 TTATTTATTTT
1788265 CCTTTTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
17 11 0.44
18 14 0.56
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.72
Consensus pattern (17 bp):
TTATTTATTTTATTTCA
Found at i:1788253 original size:14 final size:15
Alignment explanation
Indices: 1788213--1788263 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
1788203 TGATTTTCTA
*
1788213 TTTTATTT-ATTTA-
1 TTTTATTTCATTCAT
1788226 TTTTATTTCATTCAT
1 TTTTATTTCATTCAT
*
1788241 TTTTCTTTC-TTCAT
1 TTTTATTTCATTCAT
1788255 TATTTATTT
1 T-TTTATTT
1788264 TCCTTTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
13 8 0.25
14 10 0.31
15 14 0.44
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTATTTCATTCAT
Found at i:1793600 original size:36 final size:34
Alignment explanation
Indices: 1793558--1793684 Score: 110
Period size: 36 Copynumber: 3.6 Consensus size: 34
1793548 AGATGATTTA
*
1793558 TCTCACTTGAGATTGTTATTCTTAAAACAGACCTTG
1 TCTCACTTGAGACTGTT-TTCTTAAAACAGA-CTTG
* * * *
1793594 TCTCACTTGAGACTGTTTTACTTGAAAGAGGATTTA
1 TCTCACTTGAGACTGTTTT-CTTAAAACA-GACTTG
* * ** *
1793630 TTTCCCTCAAGATTGTTTTTCTTAAAACAGATCTTG
1 TCTCACTTGAGACTG-TTTTCTTAAAACAGA-CTTG
1793666 TCTCACTTGAGACTGTTTT
1 TCTCACTTGAGACTGTTTT
1793685 ACTTGAAATA
Statistics
Matches: 68, Mismatches: 19, Indels: 9
0.71 0.20 0.09
Matches are distributed among these distances:
35 8 0.12
36 54 0.79
37 6 0.09
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.42
Consensus pattern (34 bp):
TCTCACTTGAGACTGTTTTCTTAAAACAGACTTG
Found at i:1793646 original size:72 final size:72
Alignment explanation
Indices: 1793567--1793730 Score: 301
Period size: 72 Copynumber: 2.3 Consensus size: 72
1793557 ATCTCACTTG
*
1793567 AGATTGTTATTCTTAAAACAGACCTTGTCTCACTTGAGACTGTTTTACTTGAAAGAGGATTTATT
1 AGATTGTTTTTCTTAAAACAGACCTTGTCTCACTTGAGACTGTTTTACTTGAAAGAGGATTTATT
1793632 TCCCTCA
66 TCCCTCA
* *
1793639 AGATTGTTTTTCTTAAAACAGATCTTGTCTCACTTGAGACTGTTTTACTTGAAATAGGATTTATT
1 AGATTGTTTTTCTTAAAACAGACCTTGTCTCACTTGAGACTGTTTTACTTGAAAGAGGATTTATT
1793704 TCCCTCA
66 TCCCTCA
1793711 AGATTGTTTTTCTTAAAACA
1 AGATTGTTTTTCTTAAAACA
1793731 AGATTTTATC
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 89 1.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.41
Consensus pattern (72 bp):
AGATTGTTTTTCTTAAAACAGACCTTGTCTCACTTGAGACTGTTTTACTTGAAAGAGGATTTATT
TCCCTCA
Found at i:1793719 original size:36 final size:36
Alignment explanation
Indices: 1793607--1793736 Score: 127
Period size: 36 Copynumber: 3.6 Consensus size: 36
1793597 CACTTGAGAC
*
1793607 TGTTTTACTTGAAAGAGGATTTATTTCCCTCAAGAT
1 TGTTTTACTTGAAACAGGATTTATTTCCCTCAAGAT
* * * * * ** *
1793643 TGTTTTTCTTAAAACA-GATCTTGTCTCACTTGAGAC
1 TGTTTTACTTGAAACAGGAT-TTATTTCCCTCAAGAT
*
1793679 TGTTTTACTTGAAATAGGATTTATTTCCCTCAAGAT
1 TGTTTTACTTGAAACAGGATTTATTTCCCTCAAGAT
* * *
1793715 TGTTTTTCTTAAAACAAGATTT
1 TGTTTTACTTGAAACAGGATTT
1793737 TATCTCGCTT
Statistics
Matches: 70, Mismatches: 22, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
35 3 0.04
36 64 0.91
37 3 0.04
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.44
Consensus pattern (36 bp):
TGTTTTACTTGAAACAGGATTTATTTCCCTCAAGAT
Found at i:1793828 original size:14 final size:14
Alignment explanation
Indices: 1793811--1793839 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1793801 GAAACATAAA
1793811 CATCGAAAACATTT
1 CATCGAAAACATTT
1793825 CATCGAAAACATTT
1 CATCGAAAACATTT
1793839 C
1 C
1793840 CCTTGAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (14 bp):
CATCGAAAACATTT
Found at i:1793883 original size:36 final size:36
Alignment explanation
Indices: 1793836--1793921 Score: 109
Period size: 36 Copynumber: 2.4 Consensus size: 36
1793826 ATCGAAAACA
** * * *
1793836 TTTCCCTTGAAATGAATTTTTTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAG
*
1793872 TTTCCCTTGAAACAAATTTTGCCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAG
*
1793908 TTTCTCTTGAAACA
1 TTTCCCTTGAAACA
1793922 TAAACATTGA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.24, C:0.22, G:0.13, T:0.41
Consensus pattern (36 bp):
TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAG
Found at i:1793949 original size:101 final size:101
Alignment explanation
Indices: 1793829--1794121 Score: 439
Period size: 101 Copynumber: 2.9 Consensus size: 101
1793819 ACATTTCATC
* *
1793829 GAAAACATTTCCCTTGAAATGAATTTTTTCTCTCTTGAGATAGTTTCCCTTGAAACAAATTTTGC
1 GAAAACATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAATTTTGT
1793894 CTCCCTTGAGACAGTTTCTCTTGAAACATAAACATT
66 CTCCCTTGAGACAGTTTCTCTTGAAACATAAACATT
*
1793930 GAAAACATTTCCCTTGAAATGAATTTTGGCTCTCTTGAGATAGTTTCCCTTGAAACAAATTTTGT
1 GAAAACATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAATTTTGT
*
1793995 CTCCCTTGAGACAGTTTCTCTTGAAACATAAACTTT
66 CTCCCTTGAGACAGTTTCTCTTGAAACATAAACATT
** * * ** * *
1794031 GAAAACAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTTTTG---GAAGTTTTG
1 GAAAACA-TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAATTTTG
*
1794093 TCTCTCTTGAGACAGTTTCTCTTGAAACA
65 TCTCCCTTGAGACAGTTTCTCTTGAAACA
1794122 AATTTTGTTT
Statistics
Matches: 177, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
99 35 0.20
101 104 0.59
102 38 0.21
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (101 bp):
GAAAACATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAATTTTGT
CTCCCTTGAGACAGTTTCTCTTGAAACATAAACATT
Found at i:1793984 original size:36 final size:36
Alignment explanation
Indices: 1793937--1794201 Score: 165
Period size: 36 Copynumber: 7.4 Consensus size: 36
1793927 ATTGAAAACA
** * *
1793937 TTTCCCTTGAAATGAATTTTGGCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAATTTTGGCTCCCTTGAGACAG
*
1793973 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAATTTTGGCTCCCTTGAGACAG
* * *
1794009 TTTCTCTTGAAACATAA-----ACT---TTGAAAACAG
1 TTTCCCTTGAAACA-AATTTTGGCTCCCTTG-AGACAG
*
1794039 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAATTTTGGCTCCCTTGAGACAG
** * * * *
1794075 TTTCTTTTG---GAAGTTTTGTCTCTCTTGAGACAG
1 TTTCCCTTGAAACAAATTTTGGCTCCCTTGAGACAG
* * *
1794108 TTTCTCTTGAAACAAATTTTGTTTTCGTCTCTCTTGAGACAA
1 TTTCCCTTGAAACAAATTTTG-----G-CTCCCTTGAGACAG
* * **
1794150 TTTCCCTTGAAACAAATTTTGCCTCTCTCAAGACAG
1 TTTCCCTTGAAACAAATTTTGGCTCCCTTGAGACAG
* *
1794186 ATTCTCTTGAAACAAA
1 TTTCCCTTGAAACAAA
1794202 ATCTTTGAAT
Statistics
Matches: 182, Mismatches: 28, Indels: 38
0.73 0.11 0.15
Matches are distributed among these distances:
29 5 0.03
30 18 0.10
32 2 0.01
33 29 0.16
34 2 0.01
36 88 0.48
37 5 0.03
42 33 0.18
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (36 bp):
TTTCCCTTGAAACAAATTTTGGCTCCCTTGAGACAG
Found at i:1794109 original size:20 final size:20
Alignment explanation
Indices: 1794055--1794110 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 20
1794045 TTGAAACAAA
*
1794055 TTTTGTCTCCCTTGAGACAG
1 TTTTGTCTCTCTTGAGACAG
1794075 --TT-TCT-T-TTG-GA-AG
1 TTTTGTCTCTCTTGAGACAG
1794088 TTTTGTCTCTCTTGAGACAG
1 TTTTGTCTCTCTTGAGACAG
1794108 TTT
1 TTT
1794111 CTCTTGAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 14
0.65 0.02 0.33
Matches are distributed among these distances:
13 2 0.07
14 2 0.07
15 5 0.18
16 3 0.11
17 4 0.14
18 5 0.18
19 2 0.07
20 5 0.18
ACGTcount: A:0.14, C:0.18, G:0.20, T:0.48
Consensus pattern (20 bp):
TTTTGTCTCTCTTGAGACAG
Found at i:1794141 original size:42 final size:41
Alignment explanation
Indices: 1794087--1794170 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 41
1794077 TCTTTTGGAA
* *
1794087 GTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTT
1 GTTTTGTCTCTCTTGAGACAATTTCCCTTGAAACAAATTTT
1794128 GTTTTCGTCTCTCTTGAGACAATTTCCCTTGAAACAAATTTT
1 GTTTT-GTCTCTCTTGAGACAATTTCCCTTGAAACAAATTTT
1794170 G
1 G
1794171 CCTCTCTCAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 5 0.12
42 35 0.88
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (41 bp):
GTTTTGTCTCTCTTGAGACAATTTCCCTTGAAACAAATTTT
Found at i:1794287 original size:96 final size:93
Alignment explanation
Indices: 1794130--1794305 Score: 221
Period size: 96 Copynumber: 1.9 Consensus size: 93
1794120 CAAATTTTGT
*
1794130 TTTCGTCTCTCTTGAGACAATTTCCCTTGAAACAAATTTTGCCTCTCTCAAGACAGATTCTCTTG
1 TTTCGTCTCCCTTGAGACAATTTCCCTTGAAACAAATTTTGCCTCTCTCAAGACAGATTCTCTT-
* *
1794195 AAACAAAATCTTTGAATATGTTAAACTAA
65 AAAAAAAACCTTTGAATATGTTAAACTAA
* ** **
1794224 TTTCGTCTCCCTTGAGACAGTTTCTTTTTGAAACAAAATTTTGCCTC-CTTGGAGACA-ATTTCT
1 TTTCGTCTCCCTTGAGACAATTTC-CCTTGAAAC-AAATTTTGCCTCTC-TCAAGACAGA-TTCT
1794287 CTTAAAAAAAACCTTTGAA
62 CTTAAAAAAAACCTTTGAA
1794306 ATCGTTTTCT
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
94 22 0.31
95 23 0.33
96 25 0.36
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (93 bp):
TTTCGTCTCCCTTGAGACAATTTCCCTTGAAACAAATTTTGCCTCTCTCAAGACAGATTCTCTTA
AAAAAAACCTTTGAATATGTTAAACTAA
Found at i:1794337 original size:35 final size:34
Alignment explanation
Indices: 1794291--1794426 Score: 156
Period size: 35 Copynumber: 4.0 Consensus size: 34
1794281 ATTTCTCTTA
1794291 AAAAAAACCTTTGAAATCGTTTTCTCTTGAAACAC
1 AAAAAAACCTTTGAAATCG-TTTCTCTTGAAACAC
* *
1794326 AAAAAAACCTTTGAAATCGTTTTTCTTGGAACACAA
1 AAAAAAACCTTTGAAATCGTTTCTCTT-GAA-ACAC
* *
1794362 AAAGAAAACCTTTGAAATTGTTTCTCTTG---GA-
1 AAA-AAAACCTTTGAAATCGTTTCTCTTGAAACAC
1794393 AAAAAAACCTTTGAAAAT-GTTTCTCTTGAAACAC
1 AAAAAAACCTTTG-AAATCGTTTCTCTTGAAACAC
1794427 CAAACCTTCG
Statistics
Matches: 87, Mismatches: 6, Indels: 17
0.79 0.05 0.15
Matches are distributed among these distances:
30 20 0.23
31 7 0.08
32 1 0.01
33 1 0.01
34 7 0.08
35 22 0.25
36 7 0.08
37 22 0.25
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (34 bp):
AAAAAAACCTTTGAAATCGTTTCTCTTGAAACAC
Found at i:1794401 original size:67 final size:69
Alignment explanation
Indices: 1794290--1794426 Score: 174
Period size: 67 Copynumber: 2.0 Consensus size: 69
1794280 AATTTCTCTT
*
1794290 AAAAAAAACCTTTGAAATCGTTTTCTCTTGAAACACAAAAAAACCTTTG-AAATCGTTTTTCTTG
1 AAAAAAAACCTTTGAAATCGTTTTCTCTTG--ACACAAAAAAACCTTTGAAAAT-GTTTCTCTTG
*
1794354 GAACACA
63 AAACACA
* *
1794361 AAAAGAAAACCTTTGAAATTG-TTTCTCTTG-GA-AAAAAAACCTTTGAAAATGTTTCTCTTGAA
1 AAAA-AAAACCTTTGAAATCGTTTTCTCTTGACACAAAAAAACCTTTGAAAATGTTTCTCTTGAA
1794423 ACAC
65 ACAC
1794427 CAAACCTTCG
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
67 27 0.45
68 5 0.08
71 13 0.22
72 15 0.25
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.31
Consensus pattern (69 bp):
AAAAAAAACCTTTGAAATCGTTTTCTCTTGACACAAAAAAACCTTTGAAAATGTTTCTCTTGAAA
CACA
Found at i:1796403 original size:15 final size:15
Alignment explanation
Indices: 1796385--1796442 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
1796375 ATTTTCTATT
1796385 TTATTTATTTATTTA
1 TTATTTATTTATTTA
1796400 TTATTT-TTTATTTCA
1 TTATTTATTTATTT-A
* *
1796415 TTCATTTTTCTTTCTTTA
1 TT-A--TTTATTTATTTA
1796433 TTATTTATTT
1 TTATTTATTT
1796443 TCCTTTTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 7 0.19
15 15 0.42
16 1 0.03
17 1 0.03
18 6 0.17
19 6 0.17
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (15 bp):
TTATTTATTTATTTA
Found at i:1798316 original size:24 final size:24
Alignment explanation
Indices: 1798282--1798328 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
1798272 TTTTATATTT
*
1798282 ATTATTATTATTTATTTAGAAATTG
1 ATTATTATTATTTACTTA-AAATTG
1798307 ATTATT-TTATTTACTTAAAATT
1 ATTATTATTATTTACTTAAAATT
1798329 CTCGGTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
24 10 0.48
25 6 0.29
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.57
Consensus pattern (24 bp):
ATTATTATTATTTACTTAAAATTG
Found at i:1808062 original size:17 final size:17
Alignment explanation
Indices: 1808040--1808075 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
1808030 CGTTGGTGCA
*
1808040 AGCAGAAGCACTTGTGG
1 AGCAGAAGCACGTGTGG
1808057 AGCAGAAGCACGTGTGG
1 AGCAGAAGCACGTGTGG
1808074 AG
1 AG
1808076 GGAGGAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.17, G:0.39, T:0.14
Consensus pattern (17 bp):
AGCAGAAGCACGTGTGG
Found at i:1808324 original size:20 final size:20
Alignment explanation
Indices: 1808279--1808322 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
1808269 TTATTTTTAT
*
1808279 TAAA-AGTTGATAAAAAATA
1 TAAATAGTTCATAAAAAATA
1808298 TGAAATAGTTCATAAAATAATA
1 T-AAATAGTTCATAAAA-AATA
1808320 TAA
1 TAA
1808323 TAATTATTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 1 0.05
20 3 0.14
21 12 0.57
22 5 0.24
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.30
Consensus pattern (20 bp):
TAAATAGTTCATAAAAAATA
Found at i:1809773 original size:182 final size:184
Alignment explanation
Indices: 1809397--1809887 Score: 675
Period size: 182 Copynumber: 2.6 Consensus size: 184
1809387 GATACAAATA
* * * * *
1809397 AAAAATGTATCGATCTATAGCAATATAACAGGTAAAAATATGACAATACCGGTCTCGAAATGACC
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACCGGTCTCGAAATGACA
* * * * * * * * *
1809462 AGACCAGTAAAGCGCTACTGAATATGTTGAAAGCGTTGATAGTTTAATAGTTTAATATAAGCATC
66 AAACCGGTAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTT-ATAG-----TACAAGCATC
* *
1809527 GACACTTTTGGAATTTAAAAGATAAGCAGTAATAGTGCCTATAAAGTGTCGATACTTTAT
125 GACACTTTTGGAATTTAAAAGACAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTTAT
*
1809587 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACCGGTCTCAAAATGACA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACCGGTCTCGAAATGACA
* *
1809652 AAACTGGTAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTTAT-G-ACAAGTATCGACACT
66 AAACCGGTAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTTATAGTACAAGCATCGACACT
1809715 TTTGGAATTTAAAAGACAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTTAT
131 TTTGGAATTTAAAAGACAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTTAT
* *
1809769 AAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGAT-AAATCGGTCTCGAAATGACA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACCGGTCTCGAAATGACA
*
1809833 AAACCGGTAAAGCA-CTACCAGATATGTTGAAAGTGTCGATACTTTAATAAGTACA
66 AAACCGGTAAAG-AGCTACCGGATATGTTGAAAGTGTCGATACTTT-AT-AGTACA
1809888 CGTAATAAAT
Statistics
Matches: 272, Mismatches: 24, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
181 59 0.22
182 111 0.41
184 1 0.00
185 3 0.01
188 1 0.00
189 2 0.01
190 95 0.35
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.27
Consensus pattern (184 bp):
AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACCGGTCTCGAAATGACA
AAACCGGTAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTTATAGTACAAGCATCGACACT
TTTGGAATTTAAAAGACAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTTAT
Found at i:1811260 original size:200 final size:199
Alignment explanation
Indices: 1810825--1811497 Score: 851
Period size: 200 Copynumber: 3.4 Consensus size: 199
1810815 CATGAAAACA
*
1810825 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACATATAATTATAATGTA
1 AAAGTGTCGATACATTTATTAAAAGTATCAATCCCAAAAACATCGAAACATATAATTATAATGTA
* * * ** * * * *
1810890 ATAGGTAAATTTCCAATGTAACTGATAGAAATATACCGGTTAATTAGAAAACATATCTACATAAT
66 ATAGGTAAATTTACAATGTAACCGATAGAAGTATACCATTTTATGAGAAAATAGATCTACATAAT
* *
1810955 GTATCGACACTTTTTAAATTTGTGTCGATAC-TTTTTGTCCAGAATGAATGTCAAATGGGGTGCA
131 GTATCGACACTTTTTAAATTTGTGTCGATACATTTTT-TCCAGAATGAATGCCAAACGGGGTGCA
*
1811019 CCCAT
195 CGCAT
1811024 AAAGTGTCGATACATTTATTAAAAGTATCAATCCCAAAAACATCGAAACATATAATTATAATGTA
1 AAAGTGTCGATACATTTATTAAAAGTATCAATCCCAAAAACATCGAAACATATAATTATAATGTA
* * * * *
1811089 ATAGGTAAATTTTCAATGTAACCAATAGAAGTATACCAATTTTATGAGAGAGTAGATCAACATAA
66 ATAGGTAAATTTACAATGTAACCGATAGAAGTATACC-ATTTTATGAGAAAATAGATCTACATAA
* * * *
1811154 TGTATCGACACTTTTTAAATTTATGTCAATACATTTTTTCTAGAATGAACGCCAAACGGGGTGCA
130 TGTATCGACACTTTTTAAATTTGTGTCGATACATTTTTTCCAGAATGAATGCCAAACGGGGTGCA
1811219 CGCAT
195 CGCAT
* * *
1811224 AAAGTGTCGATACATTTATTAACAGTATCGATCCCAAAAACATCGAAAC-TGATAATTACAATGT
1 AAAGTGTCGATACATTTATTAAAAGTATCAATCCCAAAAACATCGAAACAT-ATAATTATAATGT
* * * * * *
1811288 ATTAGGTAAATTTACAATGTACCCGGTAG-AGATATACTGATTTTTTGAGAAAATAGGTCTACAT
65 AATAGGTAAATTTACAATGTAACCGATAGAAG-TATAC-CATTTTATGAGAAAATAGATCTACAT
** *
1811352 AATGTATTAACACTTTTTAAGA-TTGTGTCGAT--ATTTTTTCCAGAATGAATGTCC-AACGAGG
128 AATGTATCGACACTTTTTAA-ATTTGTGTCGATACATTTTTTCCAGAATGAATG-CCAAACGGGG
1811413 TGCACGCAT
191 TGCACGCAT
* * * * **
1811422 AGAGTGTCGATACATTTA--AAATTGTATCAATCCCGAAAATATCGAAACCGATAATTATAATGT
1 AAAGTGTCGATACATTTATTAAA-AGTATCAATCCCAAAAACATCGAAACATATAATTATAATGT
1811485 AATAGGTAAATTT
65 AATAGGTAAATTT
1811498 GTAATGTTAC
Statistics
Matches: 414, Mismatches: 51, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
196 2 0.00
197 46 0.11
198 49 0.12
199 102 0.25
200 209 0.50
201 6 0.01
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (199 bp):
AAAGTGTCGATACATTTATTAAAAGTATCAATCCCAAAAACATCGAAACATATAATTATAATGTA
ATAGGTAAATTTACAATGTAACCGATAGAAGTATACCATTTTATGAGAAAATAGATCTACATAAT
GTATCGACACTTTTTAAATTTGTGTCGATACATTTTTTCCAGAATGAATGCCAAACGGGGTGCAC
GCAT
Found at i:1817147 original size:37 final size:39
Alignment explanation
Indices: 1817106--1817186 Score: 89
Period size: 38 Copynumber: 2.2 Consensus size: 39
1817096 CAACTTGTTC
**
1817106 TTCTTGTCGTATCA-AAATTTT-C-CCAAAATTTCAGTTT
1 TTCTTGTCCCATCACAAATTTTACTCC-AAATTTCAGTTT
* *
1817143 TTCTT-TCCCCTTACAAATTTTACTCCAAATTTCAGTTT
1 TTCTTGTCCCATCACAAATTTTACTCCAAATTTCAGTTT
1817181 TTCTTG
1 TTCTTG
1817187 CCCCGATTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
36 4 0.11
37 12 0.33
38 18 0.50
39 2 0.06
ACGTcount: A:0.23, C:0.22, G:0.06, T:0.48
Consensus pattern (39 bp):
TTCTTGTCCCATCACAAATTTTACTCCAAATTTCAGTTT
Found at i:1826318 original size:24 final size:24
Alignment explanation
Indices: 1826284--1826364 Score: 76
Period size: 24 Copynumber: 3.2 Consensus size: 24
1826274 TTTCAAAAGG
1826284 TGAAAAGGTTTGAT-AAAGAAGTTT
1 TGAAAAGGTTTGATGAAAGAA-TTT
* *
1826308 TGAAAATGTTTTATGAAAGAATTT
1 TGAAAAGGTTTGATGAAAGAATTT
*
1826332 TGAAACAAATGG-TCGATGAAAGAATTT
1 TG--A-AAA-GGTTTGATGAAAGAATTT
1826359 TGAAAA
1 TGAAAA
1826365 ATATTTGATG
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
24 20 0.43
25 7 0.15
26 1 0.02
27 18 0.38
28 1 0.02
ACGTcount: A:0.44, C:0.02, G:0.21, T:0.32
Consensus pattern (24 bp):
TGAAAAGGTTTGATGAAAGAATTT
Found at i:1834422 original size:3 final size:3
Alignment explanation
Indices: 1834414--1834445 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
1834404 ATGTTAATAA
1834414 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1834446 AGATTATACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:1835784 original size:37 final size:36
Alignment explanation
Indices: 1835741--1835896 Score: 129
Period size: 36 Copynumber: 4.3 Consensus size: 36
1835731 AAGAAAATTG
*
1835741 TCTCGCTTGAGACAATCTCATTTAATACAAAAATTTA
1 TCTCGCTTGAGACAGTCTCATTTAA-ACAAAAATTTA
* ** * *
1835778 TCTCGCTTGAGACTGT-TTTTCTTAAATC-AAGATTCA
1 TCTCGCTTGAGACAGTCTCAT-TTAAA-CAAAAATTTA
* * * *
1835814 TCTCGCTTGAGATAGTTTCACTTTAAGCAAAAA-TTG
1 TCTCGCTTGAGACAGTCTCA-TTTAAACAAAAATTTA
* *
1835850 TCTCGCTTGAGACAGTCTCATTTAATATAAAAAATTA
1 TCTCGCTTGAGACAGTCTCATTTAA-ACAAAAATTTA
*
1835887 TCTCACTTGA
1 TCTCGCTTGA
1835897 TATTGTTTTT
Statistics
Matches: 92, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
35 5 0.05
36 48 0.52
37 38 0.41
38 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (36 bp):
TCTCGCTTGAGACAGTCTCATTTAAACAAAAATTTA
Found at i:1835824 original size:36 final size:35
Alignment explanation
Indices: 1835770--1835934 Score: 109
Period size: 36 Copynumber: 4.5 Consensus size: 35
1835760 ATTTAATACA
1835770 AAAATTTATCTCGCTTGAGACTGTTTTTCTTAAATC
1 AAAA-TTATCTCGCTTGAGACTGTTTTTCTTAAATC
* ** * *
1835806 AAGATTCATCTCGCTTGAGA-TAGTTTCACTTTAAGC
1 AAAATT-ATCTCGCTTGAGACT-GTTTTTCTTAAATC
* * ** *
1835842 AAAAATTGTCTCGCTTGAGACAGTCTCAT-TTAATATAA
1 -AAAATTATCTCGCTTGAGACTGT-TTTTCTTAA-AT-C
* * *
1835880 AAAATTATCTCACTTGATATTGTTTTTCTTAAATC
1 AAAATTATCTCGCTTGAGACTGTTTTTCTTAAATC
* *
1835915 AAGATTCATCTTGCTTGAGA
1 AAAATT-ATCTCGCTTGAGA
1835935 TAGTTTCACT
Statistics
Matches: 94, Mismatches: 26, Indels: 18
0.68 0.19 0.13
Matches are distributed among these distances:
35 8 0.09
36 57 0.61
37 29 0.31
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (35 bp):
AAAATTATCTCGCTTGAGACTGTTTTTCTTAAATC
Found at i:1835911 original size:109 final size:109
Alignment explanation
Indices: 1835734--1836068 Score: 474
Period size: 109 Copynumber: 3.1 Consensus size: 109
1835724 AAACAAAAAG
* *
1835734 AAAATTGTCTCGCTTGAGACAATCTCATTTAATACAAAAATTTATCTCGCTTGAGACTGTTTTTC
1 AAAATTGTCTCGCTTGAGACAATCTCATTTAATACAAAAATTTATCTCACTTGAGATTGTTTTTC
* *
1835799 TTAAATCAAGATTCATCTCGCTTGAGATAGTTTCACTTTAAGCA
66 TTAAATCAAGATTCATCTCGCTTGAGATAGTTTCACTTGAAGAA
* * * *
1835843 AAAATTGTCTCGCTTGAGACAGTCTCATTTAATATAAAAAATTATCTCACTTGATATTGTTTTTC
1 AAAATTGTCTCGCTTGAGACAATCTCATTTAATACAAAAATTTATCTCACTTGAGATTGTTTTTC
*
1835908 TTAAATCAAGATTCATCTTGCTTGAGATAGTTTCACTTGAAGAA
66 TTAAATCAAGATTCATCTCGCTTGAGATAGTTTCACTTGAAGAA
* * * * * *
1835952 AAAATTTTATGTAGCTTGAGATAATTTCACTTAATACAAAAATTTATCTCACTTGAGATTGTTTT
1 AAAA--TTGTCTCGCTTGAGACAATCTCATTTAATACAAAAATTTATCTCACTTGAGATTGTTTT
* * *
1836017 TCTTAAAACAAGATTCATTTCGCTTGAGATAGTTTCACTCGAA-AA
64 TCTTAAATCAAGATTCATCTCGCTTGAGATAGTTTCACTTGAAGAA
1836062 AGAAATT
1 A-AAATT
1836069 TTATCTCACA
Statistics
Matches: 200, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
109 106 0.53
110 3 0.01
111 91 0.46
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.39
Consensus pattern (109 bp):
AAAATTGTCTCGCTTGAGACAATCTCATTTAATACAAAAATTTATCTCACTTGAGATTGTTTTTC
TTAAATCAAGATTCATCTCGCTTGAGATAGTTTCACTTGAAGAA
Found at i:1836029 original size:111 final size:111
Alignment explanation
Indices: 1835745--1836074 Score: 461
Period size: 111 Copynumber: 3.0 Consensus size: 111
1835735 AAATTGTCTC
* *
1835745 GCTTGAGACAATCTCATTTAATACAAAAATTTATCTCGCTTGAGACTGTTTTTCTTAAATCAAGA
1 GCTTGAGACAATCTCATTTAATACAAAAATTTATCTCACTTGAGATTGTTTTTCTTAAATCAAGA
* * * * *
1835810 TTCATCTCGCTTGAGATAGTTTCACTTTAAGCAAAAA--TTGTCTC
66 TTCATCTTGCTTGAGATAGTTTCACTTGAAGAAAAAATTTTATCTA
* * * *
1835854 GCTTGAGACAGTCTCATTTAATATAAAAAATTATCTCACTTGATATTGTTTTTCTTAAATCAAGA
1 GCTTGAGACAATCTCATTTAATACAAAAATTTATCTCACTTGAGATTGTTTTTCTTAAATCAAGA
*
1835919 TTCATCTTGCTTGAGATAGTTTCACTTGAAGAAAAAATTTTATGTA
66 TTCATCTTGCTTGAGATAGTTTCACTTGAAGAAAAAATTTTATCTA
* * * *
1835965 GCTTGAGATAATTTCACTTAATACAAAAATTTATCTCACTTGAGATTGTTTTTCTTAAAACAAGA
1 GCTTGAGACAATCTCATTTAATACAAAAATTTATCTCACTTGAGATTGTTTTTCTTAAATCAAGA
*
1836030 TTCAT-TTCGCTTGAGATAGTTTCACTCGAA-AAAGAAATTTTATCT
66 TTCATCTT-GCTTGAGATAGTTTCACTTGAAGAAA-AAATTTTATCT
1836075 CACATTTGAT
Statistics
Matches: 195, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
109 93 0.48
110 5 0.03
111 97 0.50
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.39
Consensus pattern (111 bp):
GCTTGAGACAATCTCATTTAATACAAAAATTTATCTCACTTGAGATTGTTTTTCTTAAATCAAGA
TTCATCTTGCTTGAGATAGTTTCACTTGAAGAAAAAATTTTATCTA
Found at i:1836114 original size:74 final size:73
Alignment explanation
Indices: 1835994--1836351 Score: 341
Period size: 74 Copynumber: 4.8 Consensus size: 73
1835984 AATACAAAAA
* * * *
1835994 TTTATCTCACTTGAGATTGTTTTTCTTAAAACAAGATTCATTTCGCTTGAGATAGTTTCACTCGA
1 TTTATCTCACTT-TGATAGTTTTTCTTAAAACAAGATTCATCTCGCTTGAGACAGTTTCACTCGA
1836059 AAAAGAAAT
65 AAAAGAAAT
* * * *
1836068 TTTATCTCACATTTGATACTTTTCCTTAAAACAA-ACTTCATCTCGCTTAAGACAATTTCACTC-
1 TTTATCTCAC-TTTGATAGTTTTTCTTAAAACAAGA-TTCATCTCGCTTGAGACAGTTTCACTCG
*
1836131 AAAACATAAAT
64 AAAA-AGAAAT
* * * *
1836142 TTTATCTCACTTGAGATTGTTTTTCTTAAAACAA-ACTTCGTCTCACTTGAGACAGTTTCACTCG
1 TTTATCTCACTT-TGATAGTTTTTCTTAAAACAAGA-TTCATCTCGCTTGAGACAGTTTCACTCG
*
1836206 AAACAGAAAT
64 AAAAAGAAAT
* *
1836216 TTTATCTCAC-TTGATATTGTTTTTCTCAAAACAAGATTCATCTCGCTTGAGATAAGTTTTCACT
1 TTTATCTCACTTTGATA--GTTTTTCTTAAAACAAGATTCATCTCGCTTGAGA-CAG-TTTCACT
1836280 CGAAACAAGAAAT
62 CGAAA-AAGAAAT
* * ** * * *
1836293 TTCATTTCACTCAAGATTGTTTTTCTTAAAGA-AA-ATTTCATATCGCTTGAGAAAGTTTC
1 TTTATCTCACT-TTGATAGTTTTTCTTAAA-ACAAGA-TTCATCTCGCTTGAGACAGTTTC
1836352 CCATGAAATA
Statistics
Matches: 236, Mismatches: 33, Indels: 29
0.79 0.11 0.10
Matches are distributed among these distances:
72 3 0.01
73 8 0.03
74 151 0.64
75 12 0.05
76 16 0.07
77 42 0.18
78 1 0.00
79 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (73 bp):
TTTATCTCACTTTGATAGTTTTTCTTAAAACAAGATTCATCTCGCTTGAGACAGTTTCACTCGAA
AAAGAAAT
Found at i:1836210 original size:36 final size:36
Alignment explanation
Indices: 1835997--1836287 Score: 122
Period size: 36 Copynumber: 7.9 Consensus size: 36
1835987 ACAAAAATTT
** ** *
1835997 ATCTCACTTGAGATTGTTTTTCTTAAAACAAGA-TTC
1 ATCTCACTTGAGACAGTTTCACTCAAAACAA-ACTTC
* * * * * *
1836033 ATTTCGCTTGAGATAGTTTCACTCGAAAAAGAAATTTT
1 ATCTCACTTGAGACAGTTTCACTC--AAAACAAACTTC
* * *
1836071 ATCTCACATTTGATAC-TTTTC-CTTAAAACAAACTTC
1 ATCTCAC--TTGAGACAGTTTCACTCAAAACAAACTTC
* * * * *
1836107 ATCTCGCTTAAGACAATTTCACTCAAAACATAAATTTT
1 ATCTCACTTGAGACAGTTTCACTCAAAAC--AAACTTC
** ** *
1836145 ATCTCACTTGAGATTGTTTTTCTTAAAACAAACTTC
1 ATCTCACTTGAGACAGTTTCACTCAAAACAAACTTC
* * * *
1836181 GTCTCACTTGAGACAGTTTCACTCGAAACAGAAATTTT
1 ATCTCACTTGAGACAGTTTCACTC-AAA-ACAAACTTC
* ** **
1836219 ATCTCACTTGATATTGTTTTTCTCAAAACAAGA-TTC
1 ATCTCACTTGAGACAGTTTCACTCAAAACAA-ACTTC
* * *
1836255 ATCTCGCTTGAGATAAGTTTTCACTCGAAACAA
1 ATCTCACTTGAGA-CAG-TTTCACTCAAAACAA
1836288 GAAATTTCAT
Statistics
Matches: 183, Mismatches: 58, Indels: 26
0.69 0.22 0.10
Matches are distributed among these distances:
34 5 0.03
35 4 0.02
36 79 0.43
37 9 0.05
38 77 0.42
39 4 0.02
40 5 0.03
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (36 bp):
ATCTCACTTGAGACAGTTTCACTCAAAACAAACTTC
Found at i:1836262 original size:148 final size:146
Alignment explanation
Indices: 1835965--1836322 Score: 443
Period size: 148 Copynumber: 2.4 Consensus size: 146
1835955 ATTTTATGTA
* * *
1835965 GCTTGAGATAATTTCACTTAATACAAAAATTTATCTCACTTGAGATTGTTTTTCTTAAAACAAGA
1 GCTTGAGATAATTTCACTCAAAACAAAATTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAGA
* * * *
1836030 TTCATTTCGCTTGAGATAGTTTCACTCGAAAAAGAAATTTTATCTCACATTTGATACTTTTCCTT
66 TTCATCTCACTTGAGACAGTTTCACTCGAAAAAGAAATTTTATCTCACA-TTGATACTTTTCCTC
1836095 AAAACAAACTTCATCTC
130 AAAACAAACTTCATCTC
* *
1836112 GCTTAAGACAATTTCACTCAAAACATAAATTTTATCTCACTTGAGATTGTTTTTCTTAAAACAA-
1 GCTTGAGATAATTTCACTCAAAACA-AAATTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAG
* * * *
1836176 ACTTCGTCTCACTTGAGACAGTTTCACTCGAAACAGAAATTTTATCTCAC-TTGATATTGTTTTT
65 A-TTCATCTCACTTGAGACAGTTTCACTCGAAAAAGAAATTTTATCTCACATTGATA--CTTTTC
1836240 CTCAAAACAAGA-TTCATCTC
127 CTCAAAACAA-ACTTCATCTC
* * * **
1836260 GCTTGAGATAAGTTTTCACTCGAAACAAGAAATTTCATTTCACTCAAGATTGTTTTTCTTAAA
1 GCTTGAGATAA--TTTCACTCAAAAC-A-AAATTTTATCTCACTTGAGATTGTTTTTCTTAAA
1836323 GAAAATTTCA
Statistics
Matches: 182, Mismatches: 21, Indels: 12
0.85 0.10 0.06
Matches are distributed among these distances:
146 6 0.03
147 22 0.12
148 110 0.60
149 1 0.01
150 12 0.07
151 31 0.17
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (146 bp):
GCTTGAGATAATTTCACTCAAAACAAAATTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAGA
TTCATCTCACTTGAGACAGTTTCACTCGAAAAAGAAATTTTATCTCACATTGATACTTTTCCTCA
AAACAAACTTCATCTC
Found at i:1836497 original size:179 final size:179
Alignment explanation
Indices: 1836196--1836791 Score: 910
Period size: 179 Copynumber: 3.3 Consensus size: 179
1836186 ACTTGAGACA
* * * * * **
1836196 GTTTCACTCG-AAACAGAAATTTTATCTCACTTGATATTGTTTTTCTCAAAACAAGA-TTCATCT
1 GTTTCACTTGAAAAAAG-AATTTTATCTCACTTGAGATTGCTTTTCTTAAAACAA-ACTTTGTCT
* *
1836259 CGCTTGAGATAAGTTTTCACTCGAAACAAGAAATTTCATTTCACTCAAGATTGTTTTTCTTAAAG
64 CGCTTGAGA-AAGTTTTTACTCGAAACAAGAAATTTCATTTCACTCAAGATTCTTTTTCTTAAAG
*
1836324 AAAATTTCATATCGCTTGAGAAAGTTTCCCATGAAATATAAAATTTGAAATT
128 CAAATTTCATATCGCTTGAGAAAGTTTCCCATGAAATATAAAATTTGAAATT
* *
1836376 GTTTCACTTGAAAAAAGAATTTTATCTTACTTGAGATTGCTTTTCTTAAAAGAAACTTTGTCTCG
1 GTTTCACTTGAAAAAAGAATTTTATCTCACTTGAGATTGCTTTTCTTAAAACAAACTTTGTCTCG
* * *
1836441 CTTGAGACAGTTTTTACTCGAAACAAGAAATTTCATTTCACTAAAGATTTTTTTTCTTAAAGCAA
66 CTTGAGAAAGTTTTTACTCGAAACAAGAAATTTCATTTCACTCAAGATTCTTTTTCTTAAAGCAA
*
1836506 ATTTCATCTCGCTTGAGAAAGTTTCCCATGAAATATAAAATTTGAAATT
131 ATTTCATATCGCTTGAGAAAGTTTCCCATGAAATATAAAATTTGAAATT
* * *
1836555 ATTTCACTT-AAAACAAGAATTTTATCTCACTTGAGATTGCTTTTCTTAAAACAAAATTTGTCTT
1 GTTTCACTTGAAAA-AAGAATTTTATCTCACTTGAGATTGCTTTTCTTAAAACAAACTTTGTCTC
* * *
1836619 GCTTGAGATAGTTTTTACTCGAAACAATAAATTTCATTTCAATCAAGATTCTTTTTCTTAAAGCA
65 GCTTGAGAAAGTTTTTACTCGAAACAAGAAATTTCATTTCACTCAAGATTCTTTTTCTTAAAGCA
*
1836684 AATTTCATATCGCTTGAGAAAGTTTCTCATGAAATATAAAATTTGAAATT
130 AATTTCATATCGCTTGAGAAAGTTTCCCATGAAATATAAAATTTGAAATT
* *
1836734 GTTTCACTTGAAACAAGAATTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAACTT
1 GTTTCACTTGAAAAAAGAATTTTATCTCACTTGAGATTGCTTTTCTTAAAACAAACTT
1836792 CGCCTCACTA
Statistics
Matches: 381, Mismatches: 31, Indels: 9
0.90 0.07 0.02
Matches are distributed among these distances:
178 4 0.01
179 314 0.82
180 58 0.15
181 5 0.01
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (179 bp):
GTTTCACTTGAAAAAAGAATTTTATCTCACTTGAGATTGCTTTTCTTAAAACAAACTTTGTCTCG
CTTGAGAAAGTTTTTACTCGAAACAAGAAATTTCATTTCACTCAAGATTCTTTTTCTTAAAGCAA
ATTTCATATCGCTTGAGAAAGTTTCCCATGAAATATAAAATTTGAAATT
Found at i:1837238 original size:93 final size:93
Alignment explanation
Indices: 1837067--1837244 Score: 234
Period size: 93 Copynumber: 1.9 Consensus size: 93
1837057 AGAAGTTCGC
* * * *
1837067 AATGAAGAACTTGTTCAATCTTTGCTCGATTCACGACATTTTGAATCAGCGACACCTCACTTGAG
1 AATGAAGAACTTGTTCAACCTTTGCTCGATTCACGACATTTCGAATCAGCAACACCTCACTCGAG
**
1837132 GGATTAATATTTCCAGTAGAGAACTCAT
66 GGACCAATATTTCCAGTAGAGAACTCAT
* **
1837160 AATGAAGAACTTGTTCAACCTTTGCAT-GATTCATGACATTTCGAATCAGCAATGCCTCACTCGA
1 AATGAAGAACTTGTTCAACCTTTGC-TCGATTCACGACATTTCGAATCAGCAACACCTCACTCGA
*
1837224 GAGG-CCAATGTTTCCAGTAGA
65 G-GGACCAATATTTCCAGTAGA
1837245 AAGATCACGA
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
93 70 0.96
94 3 0.04
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (93 bp):
AATGAAGAACTTGTTCAACCTTTGCTCGATTCACGACATTTCGAATCAGCAACACCTCACTCGAG
GGACCAATATTTCCAGTAGAGAACTCAT
Found at i:1837934 original size:104 final size:103
Alignment explanation
Indices: 1837754--1838034 Score: 384
Period size: 104 Copynumber: 2.7 Consensus size: 103
1837744 GTTTTTACTC
*
1837754 GAAACAAGAAATTTCATTTCACTCAAGATTGTTTTCCTTAAAGCAAATTTTATCTCGCTTGAGAA
1 GAAACAAGAAATTTCATTTCACTCAAGATTGTTTT-CTTAAAGCAAATTTCATCTCGCTTGAGAA
1837819 AGTTTCCCATGAAATATAAAATTTGAAATTGTTTCACTT
65 AGTTTCCCATGAAATATAAAATTTGAAATTGTTTCACTT
*
1837858 GAAACAAGAAATTTCATTTCAGTCAAGATTGTTTATCTTAAAGCAAATTTCATCTCGCTTGAGAA
1 GAAACAAGAAATTTCATTTCACTCAAGATTGTTT-TCTTAAAGCAAATTTCATCTCGCTTGAGAA
* *
1837923 TGTTTCTCATGAAATATAAAATTTGAAATTGTTTCACTT
65 AGTTTCCCATGAAATATAAAATTTGAAATTGTTTCACTT
* * * ** * * ** *
1837962 GAAATAAG-AATTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAACTTCGCCTCGCTTAAGAT
1 GAAACAAGAAATTTCATTTCACTCAAGATTG-TTTTCTTAAAGCAAATTTCATCTCGCTTGAGA-
*
1838026 AATTTTCCC
64 AAGTTTCCC
1838035 TCTAAACAAA
Statistics
Matches: 156, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
103 41 0.26
104 114 0.73
105 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.38
Consensus pattern (103 bp):
GAAACAAGAAATTTCATTTCACTCAAGATTGTTTTCTTAAAGCAAATTTCATCTCGCTTGAGAAA
GTTTCCCATGAAATATAAAATTTGAAATTGTTTCACTT
Found at i:1838461 original size:93 final size:93
Alignment explanation
Indices: 1838290--1838467 Score: 243
Period size: 93 Copynumber: 1.9 Consensus size: 93
1838280 AAAAGTTCGA
* * * *
1838290 AATGAAGAACTTGTTCAACCTTTGCCTGATTCACGGCATTTCGAATCAGCGATGCCTCACTTGAG
1 AATGAAGAACTTGTTCAACCTTTGCCTGATTCACGACATTTCGAATCAGCAACGCCTCACTCGAG
**
1838355 GGATTAACATTTCCAGTAGAGAACTCAT
66 GGACCAACATTTCCAGTAGAGAACTCAT
*
1838383 AATGAAGAACTT-TTCCAACCTTTGCAC-GATTTACGACATTTCGAATCAGCAACGCCTCACTCG
1 AATGAAGAACTTGTT-CAACCTTTGC-CTGATTCACGACATTTCGAATCAGCAACGCCTCACTCG
**
1838446 AGGGACCAATGTTTCCAGTAGA
64 AGGGACCAACATTTCCAGTAGA
1838468 AAGATCACGA
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 2 0.03
93 71 0.96
94 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (93 bp):
AATGAAGAACTTGTTCAACCTTTGCCTGATTCACGACATTTCGAATCAGCAACGCCTCACTCGAG
GGACCAACATTTCCAGTAGAGAACTCAT
Found at i:1838753 original size:38 final size:38
Alignment explanation
Indices: 1838640--1838827 Score: 134
Period size: 38 Copynumber: 5.0 Consensus size: 38
1838630 AATTGCAAGC
*
1838640 CAAAACATAAATTTTATCTCAATTGAGATT-TTTTTCT
1 CAAAACATAAATTTTATCTCACTTGAGATTGTTTTTCT
* ** ** **
1838677 -TAAA-ATAAATTTCGTCTCACTTGAGACAGTTTCACT
1 CAAAACATAAATTTTATCTCACTTGAGATTGTTTTTCT
*
1838713 CAAAACAGAAATTTTATCTCACTTGAGATTGTTTTTCT
1 CAAAACATAAATTTTATCTCACTTGAGATTGTTTTTCT
* * * * *
1838751 CAAAACA-AGA-TTCATCTCGCTTGAGATAAGTTTTCACT
1 CAAAACATAAATTTTATCTCACTTGAGAT-TGTTTT-TCT
* * * ** *
1838789 CGAAACAATAAATTTCATTTCACTCAAGATTATTTTTCT
1 CAAAAC-ATAAATTTTATCTCACTTGAGATTGTTTTTCT
1838828 TAAAGCAAAT
Statistics
Matches: 113, Mismatches: 30, Indels: 14
0.72 0.19 0.09
Matches are distributed among these distances:
35 19 0.17
36 23 0.20
37 10 0.09
38 39 0.35
39 3 0.03
40 6 0.05
41 13 0.12
ACGTcount: A:0.34, C:0.18, G:0.09, T:0.39
Consensus pattern (38 bp):
CAAAACATAAATTTTATCTCACTTGAGATTGTTTTTCT
Found at i:1838775 original size:36 final size:36
Alignment explanation
Indices: 1838648--1838845 Score: 130
Period size: 36 Copynumber: 5.3 Consensus size: 36
1838638 GCCAAAACAT
* * * *
1838648 AAATTTTATCTCAATTGAGATT-TTTTTCTTAAAAT
1 AAATTTCATCTCACTTGAGATTGTTTTTCTCAAAAC
* ** **
1838683 AAATTTCGTCTCACTTGAGACAGTTTCACTCAAAAC
1 AAATTTCATCTCACTTGAGATTGTTTTTCTCAAAAC
*
1838719 AGAAATTTTATCTCACTTGAGATTGTTTTTCTCAAAAC
1 --AAATTTCATCTCACTTGAGATTGTTTTTCTCAAAAC
* * * *
1838757 AAGA-TTCATCTCGCTTGAGATAAGTTTTCACTCGAAACAAT
1 AA-ATTTCATCTCACTTGAGAT-TGTTTT-TCTC--AA-AAC
* ** * * *
1838798 AAATTTCATTTCACTCAAGATTATTTTTCTTAAAGC
1 AAATTTCATCTCACTTGAGATTGTTTTTCTCAAAAC
1838834 AAATTTCATCTC
1 AAATTTCATCTC
1838846 GTTTAAGAAA
Statistics
Matches: 122, Mismatches: 31, Indels: 19
0.71 0.18 0.11
Matches are distributed among these distances:
35 17 0.14
36 38 0.31
37 8 0.07
38 33 0.27
39 2 0.02
40 7 0.06
41 17 0.14
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.40
Consensus pattern (36 bp):
AAATTTCATCTCACTTGAGATTGTTTTTCTCAAAAC
Done.