genome.fa.s3807.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003807.1 Hibiscus syriacus cultivar Beakdansim tig00008160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56712

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3999--4111	44	2.5	45	80	7	131	24	31	20	23	1.98
8475--8681	64	3.2	65	80	11	221	27	18	24	29	1.98
11337--11415	23	3.5	22	79	8	88	25	20	26	27	1.99
14938--16731	918	2.0	919	89	2	2759	25	20	12	41	1.87
18313--18358	20	2.3	20	88	0	65	19	19	32	28	1.96
19609--19791	97	1.9	97	83	2	242	35	18	19	26	1.95
26640--26695	22	2.5	22	91	0	85	17	37	30	14	1.90
26653--26696	22	2.0	22	100	0	88	18	40	27	13	1.88
27034--27062	14	2.1	14	100	0	58	41	20	6	31	1.79
27036--27072	14	2.9	13	88	11	51	45	18	8	27	1.77
28092--28141	23	2.3	23	80	16	61	26	2	0	72	0.96
28094--28138	16	2.8	16	84	15	58	26	2	0	71	0.98
29146--29255	20	5.3	20	72	14	80	21	2	0	74	1.00
29161--29247	33	2.7	32	79	18	99	19	3	1	75	1.00
29165--29252	9	9.7	9	75	19	60	20	3	1	75	1.02
29356--29384	12	2.3	13	94	5	51	31	0	0	68	0.89
29953--30022	20	3.8	20	78	21	98	30	18	5	45	1.72
29968--29994	14	1.9	14	100	0	54	40	14	7	37	1.74
30450--30530	40	2.0	40	100	0	162	50	7	9	32	1.63
30724--30787	27	2.4	27	83	0	83	46	3	1	48	1.27
30960--31023	31	2.0	31	82	8	76	28	15	15	40	1.88
33311--33341	14	2.2	14	94	0	53	45	19	9	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39500--39588	40	2.3	39	88	2	124	25	16	20	37	1.93
40409--40473	31	2.1	31	83	11	80	32	4	6	56	1.44
43926--44019	46	2.0	46	100	0	188	27	15	14	41	1.87
47815--47854	16	2.5	15	88	8	53	60	0	37	2	1.11
52255--52321	22	3.0	22	86	0	80	32	20	22	23	1.98

Tables:   1

The End!