Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003808.1 Hibiscus syriacus cultivar Beakdansim tig00008163_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62748

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1437--1506
30
2.2
32
76
19
76
30
18
1
50
1.56
1555--1625
25
2.8
26
75
10
76
36
14
16
32
1.89
1823--1985
24
6.8
24
70
12
111
39
17
20
22
1.92
1778--2000
72
3.1
72
88
0
302
39
16
19
24
1.91
1778--1985
48
4.3
47
72
11
134
40
16
20
23
1.91
7728--7780
26
2.0
26
96
0
97
35
9
26
28
1.87
15259--15315
28
2.0
28
89
0
87
17
26
17
38
1.92
18118--18167
13
4.2
13
73
26
56
52
22
10
16
1.73
18113--18169
21
2.7
21
97
0
105
52
22
8
15
1.70
18113--18169
8
7.9
8
76
21
63
52
22
8
15
1.70
20765--20812
24
2.0
24
92
8
80
4
35
0
60
1.16
25618--25798
65
2.8
65
85
2
220
30
16
23
29
1.96
25988--26034
17
2.8
17
83
0
58
61
4
14
19
1.49
35697--35743
19
2.4
19
96
3
85
19
12
10
57
1.64
36459--36504
20
2.2
21
88
3
67
43
13
17
26
1.85
40227--40272
23
2.0
23
91
0
74
56
17
13
13
1.67
40512--40553
10
4.2
10
79
11
50
64
16
7
11
1.48
40510--40548
20
2.0
20
100
0
78
66
15
5
12
1.41
43964--44330
131
2.8
131
83
7
476
39
14
10
34
1.82
44930--45000
33
2.1
35
82
10
85
56
2
8
32
1.44
48113--48357
109
2.3
108
82
5
289
49
14
16
19
1.79
49407--49454
3
16.3
3
79
12
55
62
0
0
37
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49789--49815
10
2.7
10
100
0
54
22
0
11
66
1.22
49938--49995
25
2.3
26
84
3
73
46
0
17
36
1.48
52929--53010
3
27.7
3
95
2
148
65
0
1
32
1.00
53726--53897
60
2.9
59
79
14
183
41
4
18
35
1.70
57083--57126
20
2.1
21
83
8
54
34
4
11
50
1.59
62199--62224
9
2.9
9
100
0
52
57
0
30
11
1.34

Tables:   1

The End!