Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000381.1 Hibiscus syriacus cultivar Beakdansim tig00000697_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81908

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2258--2374
2
58.0
2
96
1
216
49
0
0
48
1.12
3019--3077
25
2.4
25
100
0
118
40
23
15
20
1.90
4689--4743
22
2.4
22
84
6
74
25
16
5
52
1.65
4689--4744
23
2.4
24
88
8
89
25
16
5
53
1.63
17333--17523
39
4.9
39
77
2
105
31
22
26
19
1.98
18980--19023
23
2.0
22
86
4
61
43
18
6
31
1.76
21020--21089
23
3.1
22
68
15
63
25
21
24
28
1.99
26865--26918
19
2.8
19
94
0
99
24
22
31
22
1.98
38585--38631
20
2.2
20
85
11
58
19
21
21
38
1.94
39287--39313
14
1.9
14
100
0
54
37
33
0
29
1.58
44653--44685
15
2.1
16
88
5
50
36
3
0
60
1.12
52631--52708
35
2.2
35
97
0
147
43
23
0
33
1.54
52631--52724
35
2.7
35
91
0
125
41
27
1
29
1.63
53202--53483
148
2.0
142
87
6
408
49
9
4
36
1.57
53661--53740
35
2.3
35
84
0
115
37
0
21
41
1.53
54355--54495
64
2.2
64
87
7
198
34
21
16
26
1.95
59482--59579
44
2.2
44
83
7
119
30
23
19
26
1.98
59502--59583
23
3.6
22
77
8
85
28
24
20
26
1.99
62277--62436
65
2.5
63
83
9
180
33
23
16
25
1.96
62889--62927
17
2.3
17
86
8
53
58
2
0
38
1.12
64690--64740
26
2.0
26
88
3
77
45
9
17
27
1.80
64964--64990
2
13.5
2
100
0
54
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66839--66922
35
2.5
34
90
3
134
32
8
19
40
1.81
66940--67009
36
1.9
37
94
2
124
44
12
21
21
1.85
66949--67038
34
2.6
35
84
7
103
44
15
20
20
1.87
67064--67121
30
1.9
30
86
6
82
36
12
17
34
1.87
67107--67189
36
2.3
36
85
0
103
39
14
20
25
1.90
67076--67458
102
3.8
101
84
1
444
39
13
18
28
1.88
67238--67743
167
3.1
164
86
9
723
40
12
17
29
1.87
67361--67485
65
1.9
65
81
3
153
39
11
19
30
1.86
67331--67637
152
2.0
152
98
0
587
41
12
18
28
1.86
67513--67663
65
2.3
65
82
4
189
39
12
19
29
1.88
67891--68213
106
3.0
106
88
0
457
22
18
24
34
1.96
68808--68902
32
2.9
32
87
1
136
38
20
11
29
1.87
68803--68909
32
3.3
32
80
3
126
38
21
13
27
1.90
71969--72106
69
2.0
69
97
0
258
26
14
21
37
1.92
72189--72234
13
3.5
12
81
18
56
2
17
2
78
0.96
72945--73008
23
2.8
22
85
4
83
26
26
26
20
1.99
73024--73238
103
2.1
103
98
0
412
37
24
13
25
1.91
73718--73775
20
2.9
20
94
0
98
8
32
34
24
1.86
73802--73844
21
2.0
21
86
0
59
16
25
27
30
1.97
79889--79952
23
2.8
22
79
13
76
26
25
26
21
2.00
79968--80179
100
2.1
102
96
2
392
37
25
12
24
1.91
80655--80692
20
1.9
20
88
0
58
10
31
34
23
1.89

Tables:   1

The End!