genome.fa.s3811.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003811.1 Hibiscus syriacus cultivar Beakdansim tig00008170_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112437

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2212--2262	22	2.4	22	87	9	70	47	3	0	49	1.20
2501--2552	23	2.3	23	79	0	59	38	11	21	28	1.88
3910--3998	30	2.9	30	82	12	94	46	7	15	30	1.75
8500--8547	21	2.3	21	78	7	53	25	20	6	47	1.73
13470--13885	202	2.0	202	93	0	715	37	9	18	33	1.84
14767--14820	17	3.2	17	97	0	99	38	5	1	53	1.35
19371--19395	13	1.9	13	100	0	50	40	32	4	24	1.73
28055--28161	36	3.0	36	93	5	182	34	16	14	34	1.89
31227--31293	29	2.2	31	84	10	86	43	10	2	43	1.54
31227--31304	31	2.6	28	80	11	75	43	11	2	42	1.54
33377--33419	21	2.1	21	82	4	52	58	9	0	32	1.30
33498--33542	6	6.9	7	85	10	51	42	15	0	42	1.47
33734--33774	19	2.2	19	90	0	64	21	29	24	24	1.99
34234--34268	17	2.1	17	88	0	52	42	2	0	54	1.15
34265--34332	32	2.1	32	83	5	84	41	2	11	44	1.56
34328--34402	20	3.6	21	81	13	84	41	12	1	45	1.49
34955--34986	2	17.0	2	87	12	50	46	0	0	53	1.00
35379--35424	24	1.9	24	82	8	58	32	28	15	23	1.95
42118--42183	14	4.6	14	75	5	60	27	25	25	21	1.99
42120--42183	29	2.2	29	85	0	83	28	26	25	20	1.99
43301--43349	23	2.1	23	96	0	89	20	18	20	40	1.91
45760--45827	15	4.5	15	88	1	100	5	64	17	11	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49015--49068	22	2.5	21	79	11	56	55	7	0	37	1.28
49048--49086	12	3.2	12	81	0	51	51	7	0	41	1.31
52399--52445	21	2.2	22	88	11	71	21	4	2	72	1.12
52517--52549	2	16.5	2	100	0	66	48	0	0	51	1.00
52715--52755	19	2.2	19	86	0	55	14	4	2	78	1.03
56084--56141	24	2.4	25	78	13	61	20	8	5	65	1.40
56394--56422	14	2.0	15	93	6	51	27	20	37	13	1.91
56607--56647	21	2.0	21	85	0	55	56	2	29	12	1.49
59993--60023	15	2.1	15	100	0	62	41	19	6	32	1.77
60475--60516	22	2.0	22	85	4	59	30	23	16	28	1.96
64430--64798	106	3.5	106	91	2	562	34	24	17	23	1.96
65456--65516	26	2.3	26	100	0	122	8	45	21	24	1.78
66473--66505	12	2.6	13	95	4	59	15	6	9	69	1.34
66538--66568	2	15.5	2	100	0	62	48	0	0	51	1.00
66650--66681	2	16.0	2	100	0	64	50	0	0	50	1.00
67418--67464	21	2.2	22	88	11	71	21	4	2	72	1.12
67625--67735	53	2.1	52	80	11	118	31	6	1	60	1.32
67932--68088	20	7.8	20	73	6	93	38	24	17	19	1.92
67991--68088	41	2.4	41	77	6	110	37	22	18	21	1.94
68075--68248	20	8.6	20	79	5	118	34	25	20	20	1.96
67931--68107	61	2.9	61	76	6	182	39	24	16	18	1.91
68055--68249	40	4.9	39	80	3	183	35	24	20	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68055--68248	60	3.2	60	83	0	244	35	24	20	19	1.95
68631--68701	33	2.2	33	94	0	124	11	23	16	47	1.79
68780--68857	41	1.9	41	97	0	147	44	16	25	12	1.83
68781--68856	21	3.7	21	83	3	109	46	17	25	11	1.82
68841--68897	14	3.7	14	75	20	60	43	21	24	10	1.83
68836--68900	33	2.0	33	96	0	121	44	20	24	10	1.83
68839--68913	33	2.3	33	90	0	114	46	22	21	9	1.79
68909--69006	19	5.7	19	71	22	99	10	23	21	44	1.82
68931--69020	14	5.7	14	72	23	72	8	24	22	44	1.81
68914--69028	33	3.5	33	100	0	230	9	23	20	46	1.79
70723--70912	93	2.1	92	96	1	353	23	12	18	45	1.83
72510--72545	14	2.6	14	95	0	63	33	0	22	44	1.53
72652--72749	19	5.4	19	84	13	143	45	17	22	14	1.84
72652--72767	53	2.2	53	98	1	225	43	18	24	13	1.86
72796--73031	19	13.4	19	78	17	278	13	21	18	46	1.83
72815--73003	52	3.6	52	99	0	369	13	22	16	46	1.83
72774--73031	71	3.7	71	82	11	327	13	22	18	46	1.83
73355--73505	20	7.6	20	82	4	153	19	19	25	35	1.96
73472--73569	20	4.8	20	77	3	79	21	18	23	36	1.95
73472--73628	61	2.6	60	80	7	176	19	17	25	38	1.93
73472--73628	41	3.9	41	70	14	110	19	17	25	38	1.93
79739--79790	2	26.0	2	96	0	95	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84655--85238	256	2.3	254	86	10	779	28	11	17	42	1.84
85570--85621	18	2.9	18	97	0	95	26	30	5	36	1.80
85553--85621	36	1.9	35	85	2	93	26	28	7	37	1.83
90205--90243	17	2.4	17	86	4	53	69	7	5	17	1.32
91861--91905	3	14.7	3	95	4	81	66	0	0	33	0.92
94228--94548	54	5.8	54	79	6	292	40	18	9	32	1.82
97027--97082	23	2.4	23	77	11	60	21	25	25	28	1.99
97200--97243	2	22.0	2	100	0	88	50	0	0	50	1.00
97531--97555	2	12.5	2	100	0	50	0	0	48	52	1.00
97984--98085	52	1.9	54	84	9	138	44	18	11	25	1.84
99447--99536	28	3.2	28	92	3	146	18	3	38	38	1.68
107079--107251	49	3.5	49	94	0	301	38	13	20	27	1.91
109063--109113	19	2.6	19	81	6	57	56	1	9	31	1.43
111687--111752	23	2.9	23	86	0	96	31	22	25	19	1.98

Tables:   1

The End!