Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003812.1 Hibiscus syriacus cultivar Beakdansim tig00008171_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67797
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Found at i:11443 original size:39 final size:36
Alignment explanation
Indices: 11400--11619 Score: 255
Period size: 37 Copynumber: 5.7 Consensus size: 36
11390 ACATATATAG
11400 TATATAATATATAGTTCTTTATAAA-ATTTTGAAAACATA
1 TATATAATATATAGTT-TTTA-AAATATTTTG-AAA-ATA
*
11439 TATATAATATATAGGTTTTTTTTAAAAAATGTTTTGAAAA-A
1 TATATAATATATA-G---TTTTT--AAAATATTTTGAAAATA
*
11480 TATATAATATATAGTTTTTAAAAATATTTTGAAAATG
1 TATATAATATATAGTTTTT-AAAATATTTTGAAAATA
*
11517 TATATAATATATAGTTTTTGAAAACATTTTGAAAATATA
1 TATATAATATATAGTTTTT-AAAATATTTTG-AAA-ATA
11556 TATATAATATATAGTTTTTGAAAATATTTTGAAAATA
1 TATATAATATATAGTTTTT-AAAATATTTTGAAAATA
11593 TATATAATATATAGTTTTTGAAAATAT
1 TATATAATATATAGTTTTT-AAAATAT
11620 ATACTATATA
Statistics
Matches: 164, Mismatches: 7, Indels: 22
0.85 0.04 0.11
Matches are distributed among these distances:
36 15 0.09
37 64 0.39
38 6 0.04
39 45 0.27
40 2 0.01
41 14 0.09
42 4 0.02
43 8 0.05
44 6 0.04
ACGTcount: A:0.45, C:0.01, G:0.08, T:0.45
Consensus pattern (36 bp):
TATATAATATATAGTTTTTAAAATATTTTGAAAATA
Found at i:11637 original size:26 final size:26
Alignment explanation
Indices: 11582--11635 Score: 85
Period size: 24 Copynumber: 2.2 Consensus size: 26
11572 TTTGAAAATA
11582 TTTTGAAAATATATATAATATATAGT
1 TTTTGAAAATATATATAATATATAGT
*
11608 TTTTG-AAA-ATATATACTATATAGT
1 TTTTGAAAATATATATAATATATAGT
11632 TTTT
1 TTTT
11636 TTAAAAACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 19 0.70
25 3 0.11
26 5 0.19
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (26 bp):
TTTTGAAAATATATATAATATATAGT
Found at i:12297 original size:18 final size:18
Alignment explanation
Indices: 12270--12306 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
12260 ATAAAAAAAT
12270 GTATTCTTTATCTTGCTC
1 GTATTCTTTATCTTGCTC
* *
12288 GTATTTTTTATCTTTCTC
1 GTATTCTTTATCTTGCTC
12306 G
1 G
12307 GCTTTTTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.19, G:0.11, T:0.59
Consensus pattern (18 bp):
GTATTCTTTATCTTGCTC
Found at i:12312 original size:18 final size:18
Alignment explanation
Indices: 12276--12314 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
12266 AAATGTATTC
*
12276 TTTATCTTGCTCGTATTT
1 TTTATCTTGCTCGGATTT
* *
12294 TTTATCTTTCTCGGCTTT
1 TTTATCTTGCTCGGATTT
12312 TTT
1 TTT
12315 CATTTGCATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.08, C:0.18, G:0.10, T:0.64
Consensus pattern (18 bp):
TTTATCTTGCTCGGATTT
Found at i:13600 original size:17 final size:17
Alignment explanation
Indices: 13578--13610 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
13568 CTATATTTTC
13578 AAATAATAAAAAGTTAA
1 AAATAATAAAAAGTTAA
13595 AAATAATAAAAAGTTA
1 AAATAATAAAAAGTTA
13611 TATTTTCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (17 bp):
AAATAATAAAAAGTTAA
Found at i:14776 original size:15 final size:15
Alignment explanation
Indices: 14751--14789 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
14741 CTAAAATCTT
14751 TTTGA-TGAGATTAC
1 TTTGAGTGAGATTAC
14765 TTTGAGTGAGATTAC
1 TTTGAGTGAGATTAC
14780 TTTGAGTGAG
1 TTTGAGTGAG
14790 TATAAGATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 5 0.21
15 19 0.79
ACGTcount: A:0.26, C:0.05, G:0.28, T:0.41
Consensus pattern (15 bp):
TTTGAGTGAGATTAC
Found at i:15705 original size:2 final size:2
Alignment explanation
Indices: 15700--15729 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
15690 AAAGAAACAC
15700 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15730 GATGGTAGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16199 original size:53 final size:53
Alignment explanation
Indices: 16119--16226 Score: 198
Period size: 53 Copynumber: 2.0 Consensus size: 53
16109 TTAGTTCGCT
*
16119 CGATCAGTCTCTGTAATGTTTTGTTCAAGATTGTCTTGAAGATGCCAACATAG
1 CGATCAGTCTCTGTAATGTTTTGTTCAAAATTGTCTTGAAGATGCCAACATAG
*
16172 CGATCTGTCTCTGTAATGTTTTGTTCAAAATTGTCTTGAAGATGCCAACATAG
1 CGATCAGTCTCTGTAATGTTTTGTTCAAAATTGTCTTGAAGATGCCAACATAG
16225 CG
1 CG
16227 TATGCAGCGA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (53 bp):
CGATCAGTCTCTGTAATGTTTTGTTCAAAATTGTCTTGAAGATGCCAACATAG
Found at i:17823 original size:33 final size:32
Alignment explanation
Indices: 17785--17849 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
17775 AATTTCAAAG
*
17785 AGTTCTAA-AGTTTAGGGACTAAATCTAAAAGAA
1 AGTTCTAATAG-TTAAGGACTAAAT-TAAAAGAA
17818 AGTTCTAATAGTTAAGGACTAAATTAAAAGAA
1 AGTTCTAATAGTTAAGGACTAAATTAAAAGAA
17850 TCTAAACTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 8 0.27
33 20 0.67
34 2 0.07
ACGTcount: A:0.48, C:0.08, G:0.17, T:0.28
Consensus pattern (32 bp):
AGTTCTAATAGTTAAGGACTAAATTAAAAGAA
Found at i:18251 original size:11 final size:11
Alignment explanation
Indices: 18235--18266 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
18225 ACATGGCAAC
18235 GAATTAAAAAT
1 GAATTAAAAAT
18246 GAATTAAAAAT
1 GAATTAAAAAT
*
18257 AAATTAAAAA
1 GAATTAAAAA
18267 CGAAGAGTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (11 bp):
GAATTAAAAAT
Found at i:18371 original size:18 final size:19
Alignment explanation
Indices: 18348--18386 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
18338 TTTAGTTCTG
* *
18348 AATAAACAATTAACA-AAT
1 AATAAAAAAATAACAGAAT
18366 AATAAAAAAATAACAGAAT
1 AATAAAAAAATAACAGAAT
18385 AA
1 AA
18387 GGACATGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.72, C:0.08, G:0.03, T:0.18
Consensus pattern (19 bp):
AATAAAAAAATAACAGAAT
Found at i:19198 original size:239 final size:238
Alignment explanation
Indices: 18757--19233 Score: 699
Period size: 239 Copynumber: 2.0 Consensus size: 238
18747 TCGGTCTGAA
* *
18757 ACTCTTCAAAAAGGGGCCGAAAACCCTTGGACTTCCGCCTCATCGATCACCTCCGTTAGTCTTTG
1 ACTCTTCAAAAAGGGGCCGAAAACCCTTCGACTTCCGCCTCATCGATCACCTCCGTCAGTCTTTG
** * * *
18822 GATCGAGCTAGCTCTGAAGTATATTGTTCACGCCATCCACGGGCTTCACTTCACTGTCAGGATCT
66 GATCGAGCTAGCTCCAAAGTATATTGTTCACGCCATCCACGGGCTTCACTTCACCGTCAGAATAT
* *
18887 GCCAGTGGAAGCCACAAAAGCCGGTGTAGCTTCAGCCAAGAGGTACGATCTCCTTCTCTGTACTT
131 GCAAGTGGAAGCCACAAAAGCCGGTGTAGCTTCAACCAAGAGGTACGATCTCCTTCTCTGTACTT
18952 ATTAATTTTGTTTGTTTGTTTCGAATGGGTTGGGTTTCTTCTCTT
196 ATTAA-TTT-TTTGTTTGTTTCGAATGGGTTGGGTTTCTTCTCTT
* * * *
18997 ACTCTTCAAAAA-GGGCCGAGAACCCTTCGACTTTCGCCTCGTCGATCGCCTCCGTCAG-CTATT
1 ACTCTTCAAAAAGGGGCCGAAAACCCTTCGACTTCCGCCTCATCGATCACCTCCGTCAGTCT-TT
* *
19060 GGATCGAGCTAGCTCCAAAGTATGTTGTTCATGCCATCCACGGGCTTCACTTCACCGTCCA-AAT
65 GGATCGAGCTAGCTCCAAAGTATATTGTTCACGCCATCCACGGGCTTCACTTCACCGT-CAGAAT
* * * * *
19124 ATGCAAGTGGAAGCCCCAAACGCTGGTGTAGCTTCAACCGAGAGGTACGATCTCCTTCTCTTTAC
129 ATGCAAGTGGAAGCCACAAAAGCCGGTGTAGCTTCAACCAAGAGGTACGATCTCCTTCTCTGTAC
* *
19189 TTTTTAATTTTTTGTTTGTTTCGAATGGGTTGGTTTTCTTCTCTT
194 TTATTAATTTTTTGTTTGTTTCGAATGGGTTGGGTTTCTTCTCTT
19234 GCTTCTTTTT
Statistics
Matches: 213, Mismatches: 22, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
237 34 0.16
238 5 0.02
239 160 0.75
240 14 0.07
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (238 bp):
ACTCTTCAAAAAGGGGCCGAAAACCCTTCGACTTCCGCCTCATCGATCACCTCCGTCAGTCTTTG
GATCGAGCTAGCTCCAAAGTATATTGTTCACGCCATCCACGGGCTTCACTTCACCGTCAGAATAT
GCAAGTGGAAGCCACAAAAGCCGGTGTAGCTTCAACCAAGAGGTACGATCTCCTTCTCTGTACTT
ATTAATTTTTTGTTTGTTTCGAATGGGTTGGGTTTCTTCTCTT
Found at i:34536 original size:13 final size:13
Alignment explanation
Indices: 34518--34543 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34508 AGCACTCTGG
34518 TTCACCATTGTCA
1 TTCACCATTGTCA
34531 TTCACCATTGTCA
1 TTCACCATTGTCA
34544 ATCAGCAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.08, T:0.38
Consensus pattern (13 bp):
TTCACCATTGTCA
Found at i:34820 original size:17 final size:15
Alignment explanation
Indices: 34782--34814 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
34772 TAAAAACGTA
*
34782 TTTAAAAAAAATCAT
1 TTTAAGAAAAATCAT
34797 TTTAAGAAAAATCAT
1 TTTAAGAAAAATCAT
34812 TTT
1 TTT
34815 TTAAGACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (15 bp):
TTTAAGAAAAATCAT
Found at i:35815 original size:90 final size:90
Alignment explanation
Indices: 35655--35901 Score: 440
Period size: 90 Copynumber: 2.7 Consensus size: 90
35645 CATCCTGCCC
* * * *
35655 GAAGGTCTTATGGATGTCCTGAAGGACTTAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAA
1 GAAGGTCTTATGGATGGCCCGAAGGACTTAAAAATCAAGAAACCCCCGAAGGCTCAGTTTCTTAA
* *
35720 ATTTCATTTGAAAACATCTTGCATT
66 TTTTCATTTGAAAACATCCTGCATT
35745 GAAGGTCTTATGGATGGCCCGAAGGACTTAAAAATCAAGAAACCCCCGAAGGCTCAGTTTCTTAA
1 GAAGGTCTTATGGATGGCCCGAAGGACTTAAAAATCAAGAAACCCCCGAAGGCTCAGTTTCTTAA
35810 TTTTCATTTGAAAACATCCTGCATT
66 TTTTCATTTGAAAACATCCTGCATT
35835 GAAGGTCTTATGGATGGCCCGAAGGACTTAAAAATCAAGAAACCCCCGAAGGCTCAGTTTCTTAA
1 GAAGGTCTTATGGATGGCCCGAAGGACTTAAAAATCAAGAAACCCCCGAAGGCTCAGTTTCTTAA
35900 TT
66 TT
35902 GTCACCAAGG
Statistics
Matches: 151, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
90 151 1.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (90 bp):
GAAGGTCTTATGGATGGCCCGAAGGACTTAAAAATCAAGAAACCCCCGAAGGCTCAGTTTCTTAA
TTTTCATTTGAAAACATCCTGCATT
Found at i:35982 original size:54 final size:55
Alignment explanation
Indices: 35900--36007 Score: 182
Period size: 54 Copynumber: 2.0 Consensus size: 55
35890 AGTTTCTTAA
*
35900 TTGTCACCAAGGAACCCCTACATATCACGTTGGTCCCTCAAG-TGTTCATCAAGT
1 TTGTCACCAAGGAACCCCTACATATCACGATGGTCCCTCAAGCTGTTCATCAAGT
* *
35954 TTGTCATCAAGGAACCCCTACATATCACGATGGTCCCTCAAGCTTTTCATCAAG
1 TTGTCACCAAGGAACCCCTACATATCACGATGGTCCCTCAAGCTGTTCATCAAG
36008 AAACCCCACA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
54 40 0.80
55 10 0.20
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.28
Consensus pattern (55 bp):
TTGTCACCAAGGAACCCCTACATATCACGATGGTCCCTCAAGCTGTTCATCAAGT
Found at i:36013 original size:43 final size:43
Alignment explanation
Indices: 35948--36394 Score: 285
Period size: 43 Copynumber: 9.6 Consensus size: 43
35938 CAAGTGTTCA
*
35948 TCAAG-TTTGTCATCAAGGAACCCCTACATATCACGATGGTCCC
1 TCAAGCTTT-TCATCAAGAAACCCCTACATATCACGATGGTCCC
* **
35991 TCAAGCTTTTCATCAAGAAACCCC-ACATATCAAGATGGTTTC
1 TCAAGCTTTTCATCAAGAAACCCCTACATATCACGATGGTCCC
* *
36033 TCAAGTTTGTCATCAAATTTGTCATCAAGGAACCCCTACATATCACGATAGTCCC
1 TCAA----G----C---TTT-TCATCAAGAAACCCCTACATATCACGATGGTCCC
36088 TCAAGCTTTTCATCAAGAAACCCCTACATATCACGATGGTTTCTTAAGCTTGTC
1 TCAAGCTTTTCATCAAGAAACCCCTACATATCACGATGG--TC-----C----C
* * * **
36142 ATCAA-ATTTGTCATCAAGAAACCCCTGCATATCACGATGATTTC
1 -TCAAGCTTT-TCATCAAGAAACCCCTACATATCACGATGGTCCC
* * *
36186 TCAATCTTTTCATCAA-AGAACCCCTACATATCATGATGGTCCT
1 TCAAGCTTTTCATCAAGA-AACCCCTACATATCACGATGGTCCC
* *
36229 TCAAGCTTGTTATCAAATTTGTCATCAAGAAACCCCTGCATATCACGATGGTCTC
1 TCAA----G----C---TTT-TCATCAAGAAACCCCTACATATCACGATGGTCCC
*
36284 TCAAG-TTGTTCATCAA-AGAACCCCTACATATCACGATGGTCCT
1 TCAAGCTT-TTCATCAAGA-AACCCCTACATATCACGATGGTCCC
* * *
36327 TCAAGCTTGTCCTCAAGAAACCCCTACATATCACGATGGTCTC
1 TCAAGCTTTTCATCAAGAAACCCCTACATATCACGATGGTCCC
* *
36370 TCAAGATTTTCTTCAAGAAACCCCT
1 TCAAGCTTTTCATCAAGAAACCCCT
36395 GAAAATCAGT
Statistics
Matches: 320, Mismatches: 38, Indels: 92
0.71 0.08 0.20
Matches are distributed among these distances:
42 21 0.07
43 168 0.52
44 14 0.04
45 2 0.01
46 1 0.00
47 1 0.00
50 2 0.01
51 3 0.01
53 4 0.01
54 21 0.07
55 82 0.26
56 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.30
Consensus pattern (43 bp):
TCAAGCTTTTCATCAAGAAACCCCTACATATCACGATGGTCCC
Found at i:36092 original size:55 final size:54
Alignment explanation
Indices: 36000--36300 Score: 256
Period size: 55 Copynumber: 5.9 Consensus size: 54
35990 CTCAAGCTTT
* *
36000 TCATCAAGAAACCCC-ACATATCAAGATGGTTTCTCAAGTTTGTCATCAAATTTG
1 TCATCAAGAAACCCCTACATATCACGATGGTCTCTCAAG-TTGTCATCAAATTTG
* * *
36054 TCATCAAGGAACCCCTACATATCACGATAGTCCCTCAA---G----C---TTT-
1 TCATCAAGAAACCCCTACATATCACGATGGTCTCTCAAGTTGTCATCAAATTTG
* *
36097 TCATCAAGAAACCCCTACATATCACGATGGTTTCTTAAGCTTGTCATCAAATTTG
1 TCATCAAGAAACCCCTACATATCACGATGGTCTCTCAAG-TTGTCATCAAATTTG
* * *
36152 TCATCAAGAAACCCCTGCATATCACGATGATTTCTC-A------ATC---TTT-
1 TCATCAAGAAACCCCTACATATCACGATGGTCTCTCAAGTTGTCATCAAATTTG
* *
36195 TCATCAAAG-AACCCCTACATATCATGATGGTC-CTTCAAGCTTGTTATCAAATTTG
1 TCATC-AAGAAACCCCTACATATCACGATGGTCTC-TCAAG-TTGTCATCAAATTTG
*
36250 TCATCAAGAAACCCCTGCATATCACGATGGTCTCTCAAGTTGTTCATCAAA
1 TCATCAAGAAACCCCTACATATCACGATGGTCTCTCAAGTTG-TCATCAAA
36301 GAACCCCTAC
Statistics
Matches: 197, Mismatches: 20, Indels: 59
0.71 0.07 0.21
Matches are distributed among these distances:
42 1 0.01
43 59 0.30
44 10 0.05
47 5 0.03
51 5 0.03
54 27 0.14
55 89 0.45
56 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (54 bp):
TCATCAAGAAACCCCTACATATCACGATGGTCTCTCAAGTTGTCATCAAATTTG
Found at i:36178 original size:98 final size:98
Alignment explanation
Indices: 35907--36394 Score: 557
Period size: 98 Copynumber: 5.1 Consensus size: 98
35897 TAATTGTCAC
* * * * * *
35907 CAAGGAACCCCTACATATCACGTTGGTCCCTCAAG--TGTTCATCAAGTTTGTCATCAAGGAACC
1 CAAGAAACCCCTACATATCACGATGGTTCCTTAAGCTTG-TCATCAAATTTGTCATCAAGAAACC
35970 CCTACATATCACGATGGTCCCTCAAGCTTTTCAT
65 CCTACATATCACGATGGTCCCTCAAGCTTTTCAT
* * * * *
36004 CAAGAAACCCC-ACATATCAAGATGGTTTCTCAAGTTTGTCATCAAATTTGTCATCAAGGAACCC
1 CAAGAAACCCCTACATATCACGATGGTTCCTTAAGCTTGTCATCAAATTTGTCATCAAGAAACCC
*
36068 CTACATATCACGATAGTCCCTCAAGCTTTTCAT
66 CTACATATCACGATGGTCCCTCAAGCTTTTCAT
*
36101 CAAGAAACCCCTACATATCACGATGGTTTCTTAAGCTTGTCATCAAATTTGTCATCAAGAAACCC
1 CAAGAAACCCCTACATATCACGATGGTTCCTTAAGCTTGTCATCAAATTTGTCATCAAGAAACCC
* * ** *
36166 CTGCATATCACGATGATTTCTCAATCTTTTCAT
66 CTACATATCACGATGGTCCCTCAAGCTTTTCAT
* *
36199 CAA-AGAACCCCTACATATCATGATGG-TCCTTCAAGCTTGTTATCAAATTTGTCATCAAGAAAC
1 CAAGA-AACCCCTACATATCACGATGGTTCCTT-AAGCTTGTCATCAAATTTGTCATCAAGAAAC
* *
36262 CCCTGCATATCACGATGGTCTCTCAAG-TTGTTCAT
64 CCCTACATATCACGATGGTCCCTCAAGCTT-TTCAT
36297 CAA-AGAACCCCTACATATCACGATGG-TCCTTCAAGCTTG---TC--------C-TCAAGAAAC
1 CAAGA-AACCCCTACATATCACGATGGTTCCTT-AAGCTTGTCATCAAATTTGTCATCAAGAAAC
* * *
36348 CCCTACATATCACGATGGTCTCTCAAGATTTTCTT
64 CCCTACATATCACGATGGTCCCTCAAGCTTTTCAT
36383 CAAGAAACCCCT
1 CAAGAAACCCCT
36395 GAAAATCAGT
Statistics
Matches: 357, Mismatches: 26, Indels: 27
0.87 0.06 0.07
Matches are distributed among these distances:
86 49 0.14
87 4 0.01
95 2 0.01
96 19 0.05
97 85 0.24
98 198 0.55
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (98 bp):
CAAGAAACCCCTACATATCACGATGGTTCCTTAAGCTTGTCATCAAATTTGTCATCAAGAAACCC
CTACATATCACGATGGTCCCTCAAGCTTTTCAT
Found at i:36456 original size:15 final size:15
Alignment explanation
Indices: 36436--36464 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
36426 GTTTCGAGCG
36436 AAACTATCTCAAGCA
1 AAACTATCTCAAGCA
36451 AAACTATCTCAAGC
1 AAACTATCTCAAGC
36465 GAGATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.28, G:0.07, T:0.21
Consensus pattern (15 bp):
AAACTATCTCAAGCA
Found at i:36535 original size:36 final size:36
Alignment explanation
Indices: 36451--36674 Score: 223
Period size: 36 Copynumber: 6.0 Consensus size: 36
36441 ATCTCAAGCA
* * * *
36451 AAACTATCTCAAGCGAGATAAAATATTATGTTTCAAGTG
1 AAACTGTCTCAAGGGAGA-CAAA-ATT-TGTTTCAAGGG
*
36490 AAATTGTCTCAAGGGAGACAAAATTTGTTTCAAGGG
1 AAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGG
* *
36526 AAACCGTCTCAAGGGAGACAAGATTTGTTTCAAGGG
1 AAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGG
* **
36562 AAACCGTCTCAAGGGAGACAAAATTTGTTTCAAGAA
1 AAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGG
* * * *
36598 AAACTATCTCAAGCGAGACAAAATCTTTTGTTTCGAGGT
1 AAACTGTCTCAAGGGAGACAAAA---TTTGTTTCAAGGG
* *
36637 AAACTATCTCAAGAGAGACAAAATATTTTGTTTCAAGG
1 AAACTGTCTCAAGGGAGAC-AAA-A-TTTGTTTCAAGG
36675 AAAAACAATC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
36 96 0.60
37 3 0.02
38 3 0.02
39 55 0.34
40 3 0.02
41 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (36 bp):
AAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGG
Found at i:36571 original size:72 final size:73
Alignment explanation
Indices: 36444--36718 Score: 257
Period size: 72 Copynumber: 3.6 Consensus size: 73
36434 CGAAACTATC
* * * * *
36444 TCAAGCAAAACTATCTCAAGCGAGATAAAATATTATGTTTCAAGTGAAATTGTCTCAAGGGAGAC
1 TCAAGGAAAACCATCTCAAGCGAGACAAAAT-TT-TGTTTCAAGGGAAACTGTCTCAAGGGAGAC
36509 AAAATTTGTT
64 AAAATTTGTT
* * * * *
36519 TCAAGGGAAACCGTCTCAAGGGAGACAAGA-TTTGTTTCAAGGGAAACCGTCTCAAGGGAGACAA
1 TCAAGGAAAACCATCTCAAGCGAGACAAAATTTTGTTTCAAGGGAAACTGTCTCAAGGGAGACAA
36583 AATTTGTT
66 AATTTGTT
* * * * * *
36591 TCAAGAAAAACTATCTCAAGCGAGACAAAATCTTTTGTTTCGAGGTAAACTATCTCAAGAGAGAC
1 TCAAGGAAAACCATCTCAAGCGAGACAAAA--TTTTGTTTCAAGGGAAACTGTCTCAAGGGAGAC
36656 AAAATATTTTGTT
64 -AAA-A-TTTGTT
* * * *
36669 TCAAGGAAAAACAATCTTGAA-CGAGATAAAATTTTCTGTTTCAAGAGAAA
1 TCAAGG-AAAACCATC-TCAAGCGAGACAAAA-TTT-TGTTTCAAGGGAAA
36719 ACAATCTTGA
Statistics
Matches: 162, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
72 61 0.38
73 2 0.01
75 50 0.31
76 3 0.02
77 1 0.01
78 14 0.09
79 28 0.17
80 3 0.02
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.27
Consensus pattern (73 bp):
TCAAGGAAAACCATCTCAAGCGAGACAAAATTTTGTTTCAAGGGAAACTGTCTCAAGGGAGACAA
AATTTGTT
Found at i:36762 original size:80 final size:78
Alignment explanation
Indices: 36549--36781 Score: 224
Period size: 80 Copynumber: 3.0 Consensus size: 78
36539 GGAGACAAGA
* ** * * *
36549 TTTGTTTCAAGGGAAACCGTCTCAAGGGAGAC-AAA-ATT-TGTTTCAAGAAAAACTATC-TCAA
1 TTTGTTTCAAGGAAAACAATCTCAAGAGAGACAAAATATTATGTTTCAAGAAAAACAATCTTGAA
*
36610 GCGAGACAAAATCT
66 -CGAGATAAAATCT
* * * *
36624 TTTGTTTCGAGGTAAACTATCTCAAGAGAGACAAAATATTTTGTTTCAAGGAAAAACAATCTTGA
1 TTTGTTTCAAGGAAAACAATCTCAAGAGAGACAAAATATTATGTTTCAA-GAAAAACAATCTTGA
36689 ACGAGATAAAAT-T
65 ACGAGATAAAATCT
** * * *
36702 TTCTGTTTCAAGAGAAAACAATCTTGAGTGAGATAAAATCTTATGTTTCAAGAAAAAACAATCTT
1 TT-TGTTTCAAG-GAAAACAATCTCAAGAGAGACAAAATATTATGTTTCAAG-AAAAACAATCTT
**
36767 GAATAAGATAAAATC
63 GAACGAGATAAAATC
36782 CAAGTGAGAC
Statistics
Matches: 130, Mismatches: 19, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
75 27 0.21
76 3 0.02
77 3 0.02
78 11 0.08
79 29 0.22
80 57 0.44
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (78 bp):
TTTGTTTCAAGGAAAACAATCTCAAGAGAGACAAAATATTATGTTTCAAGAAAAACAATCTTGAA
CGAGATAAAATCT
Found at i:36781 original size:40 final size:40
Alignment explanation
Indices: 36651--36781 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
36641 TATCTCAAGA
* * * * *
36651 GAGACAAAATATTTTGTTTCAAGGAAAAACAATCTTGAAC
1 GAGATAAAATCTTATGTTTCAAGAAAAAACAATCTTGAAT
* * * *
36691 GAGATAAAATTTTCTGTTTCAAGAGAAAACAATCTTGAGT
1 GAGATAAAATCTTATGTTTCAAGAAAAAACAATCTTGAAT
36731 GAGATAAAATCTTATGTTTCAAGAAAAAACAATCTTGAAT
1 GAGATAAAATCTTATGTTTCAAGAAAAAACAATCTTGAAT
*
36771 AAGATAAAATC
1 GAGATAAAATC
36782 CAAGTGAGAC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.46, C:0.11, G:0.15, T:0.29
Consensus pattern (40 bp):
GAGATAAAATCTTATGTTTCAAGAAAAAACAATCTTGAAT
Found at i:38842 original size:13 final size:13
Alignment explanation
Indices: 38826--38899 Score: 55
Period size: 13 Copynumber: 5.5 Consensus size: 13
38816 ATTAAATAAA
38826 ATAAAATTAAAAT
1 ATAAAATTAAAAT
38839 ATAAAATATAAAAT
1 ATAAAAT-TAAAAT
*
38853 A-AACGATTAAAAT
1 ATAA-AATTAAAAT
38866 A-AAAGATATCAAAAT
1 ATAAA-AT-T-AAAAT
* *
38881 ATAAAACTCAAA-
1 ATAAAATTAAAAT
38893 ATAAAAT
1 ATAAAAT
38900 AGTTTAGAAG
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
12 6 0.12
13 23 0.46
14 11 0.22
15 7 0.14
16 3 0.06
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.24
Consensus pattern (13 bp):
ATAAAATTAAAAT
Found at i:38845 original size:7 final size:7
Alignment explanation
Indices: 38826--38886 Score: 58
Period size: 7 Copynumber: 8.9 Consensus size: 7
38816 ATTAAATAAA
38826 ATAAAAT
1 ATAAAAT
38833 -TAAAAT
1 ATAAAAT
38839 ATAAAAT
1 ATAAAAT
38846 ATAAAAT
1 ATAAAAT
*
38853 A-AACGAT
1 ATAA-AAT
38860 -TAAAAT
1 ATAAAAT
38866 A-AAAGAT
1 ATAAA-AT
38873 ATCAAAAT
1 AT-AAAAT
38881 ATAAAA
1 ATAAAA
38887 CTCAAAATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
6 13 0.29
7 25 0.56
8 4 0.09
9 3 0.07
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (7 bp):
ATAAAAT
Found at i:38851 original size:20 final size:20
Alignment explanation
Indices: 38826--38886 Score: 56
Period size: 20 Copynumber: 3.0 Consensus size: 20
38816 ATTAAATAAA
38826 ATAAAATTAAAATATAAAAT
1 ATAAAATTAAAATATAAAAT
38846 ATAAAA-TAAACGAT-TAAAAT
1 ATAAAATTAAA--ATATAAAAT
38866 A-AAAGATATCAAAATATAAAA
1 ATAAA-AT-T-AAAATATAAAA
38887 CTCAAAATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
19 7 0.21
20 14 0.41
21 4 0.12
22 6 0.18
23 3 0.09
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (20 bp):
ATAAAATTAAAATATAAAAT
Found at i:38853 original size:25 final size:26
Alignment explanation
Indices: 38821--38881 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 26
38811 AAGGAATTAA
38821 ATAAAATAAA-ATTAAAATATAAA-AT
1 ATAAAATAAACATTAAAATA-AAAGAT
38846 ATAAAATAAACGATTAAAATAAAAGAT
1 ATAAAATAAAC-ATTAAAATAAAAGAT
38873 ATCAAAATA
1 AT-AAAATA
38882 TAAAACTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
25 10 0.31
26 3 0.09
27 13 0.41
28 6 0.19
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (26 bp):
ATAAAATAAACATTAAAATAAAAGAT
Found at i:40682 original size:2 final size:2
Alignment explanation
Indices: 40677--40716 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
40667 TATTTGTATG
40677 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
40717 GAAATATTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:48448 original size:7 final size:7
Alignment explanation
Indices: 48438--48466 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
48428 TTACATTTTC
48438 ATTCTTT
1 ATTCTTT
48445 ATTCTTT
1 ATTCTTT
48452 ATTCTTT
1 ATTCTTT
48459 ATTCTTT
1 ATTCTTT
48466 A
1 A
48467 CATTCATTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (7 bp):
ATTCTTT
Found at i:52032 original size:10 final size:10
Alignment explanation
Indices: 51992--52047 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 10
51982 ACTATGCTTG
51992 AAGAAAAAAA
1 AAGAAAAAAA
52002 GAA-ACAAATAAA
1 -AAGA-AAA-AAA
52014 AAGATAAAAAA
1 AAGA-AAAAAA
*
52025 ATGAAAAAAA
1 AAGAAAAAAA
52035 AAGAAATAAAA
1 AAGAAA-AAAA
52046 AA
1 AA
52048 ATGAAAAGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
10 12 0.32
11 19 0.50
12 7 0.18
ACGTcount: A:0.82, C:0.02, G:0.09, T:0.07
Consensus pattern (10 bp):
AAGAAAAAAA
Found at i:52049 original size:8 final size:8
Alignment explanation
Indices: 51995--52054 Score: 59
Period size: 8 Copynumber: 7.5 Consensus size: 8
51985 ATGCTTGAAG
*
51995 AAAAAAAG
1 AAAAAAAT
*
52003 AAACAAAT
1 AAAAAAAT
*
52011 AAAAAGAT
1 AAAAAAAT
52019 AAAAAAAT
1 AAAAAAAT
*
52027 GAAAAAA-
1 AAAAAAAT
*
52034 AAAGAAAT
1 AAAAAAAT
52042 AAAAAAAT
1 AAAAAAAT
52050 GAAAA
1 -AAAA
52055 GAGAAAAATG
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
7 5 0.12
8 32 0.78
9 4 0.10
ACGTcount: A:0.82, C:0.02, G:0.08, T:0.08
Consensus pattern (8 bp):
AAAAAAAT
Found at i:53183 original size:90 final size:90
Alignment explanation
Indices: 53068--53234 Score: 275
Period size: 92 Copynumber: 1.9 Consensus size: 90
53058 TGAGGGATTG
53068 ACATTTTCAGGAGAGTTCATAATGAGAAGAACT-ATCCAAC-GAGGAAGAAGAAGTTCATAATGA
1 ACATTTTCAGGAGAGTTCATAATGAGAAGAACTCATCCAACAGAGGAAGAAGAAGTTCATAATGA
53131 GAAGAACTTGTTCAACTTCGTATCA
66 GAAGAACTTGTTCAACTTCGTATCA
* *
53156 ACATTTTCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
1 ACATTTTC-A-GGAGAGTTCATAATGAGAAGAACTCATCCAACAGAGGAAGAAGAAGTTCATAAT
*
53221 GAGAAGAGCTTGTT
64 GAGAAGAACTTGTT
53235 TGACCTATCA
Statistics
Matches: 72, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
88 8 0.11
89 1 0.01
90 24 0.33
91 6 0.08
92 33 0.46
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.25
Consensus pattern (90 bp):
ACATTTTCAGGAGAGTTCATAATGAGAAGAACTCATCCAACAGAGGAAGAAGAAGTTCATAATGA
GAAGAACTTGTTCAACTTCGTATCA
Found at i:54255 original size:38 final size:37
Alignment explanation
Indices: 54197--54269 Score: 92
Period size: 38 Copynumber: 1.9 Consensus size: 37
54187 ATTAGCTGTA
** * *
54197 ATATTTTATTTTTTTTATTTTGATCTCTATACTTTAAT
1 ATATTTTATTTTAGTCATTTTAAT-TCTATACTTTAAT
*
54235 ATATTTTATTTTAGTCATTTTAATTCTATATTTTA
1 ATATTTTATTTTAGTCATTTTAATTCTATACTTTA
54270 GTCTTCTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 10 0.33
38 20 0.67
ACGTcount: A:0.26, C:0.07, G:0.03, T:0.64
Consensus pattern (37 bp):
ATATTTTATTTTAGTCATTTTAATTCTATACTTTAAT
Found at i:54357 original size:35 final size:36
Alignment explanation
Indices: 54295--54389 Score: 92
Period size: 35 Copynumber: 2.7 Consensus size: 36
54285 TTATTTTGAG
* * *
54295 TTTTATATTTTGATAT-CTTTTATTTTAA-TCCTTTA
1 TTTTATATTTTAATTTAATTTTA-TTTAATTCCTTTA
54330 TTTTATATTTTAATTTAATTTTATTTAATTCCTTTA
1 TTTTATATTTTAATTTAATTTTATTTAATTCCTTTA
* *
54366 ATTT-CA--TTAATTTAATTTTTATTT
1 TTTTATATTTTAATTTAA-TTTTATTT
54390 TTATTTTTGC
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
33 9 0.17
34 8 0.15
35 20 0.38
36 15 0.29
ACGTcount: A:0.26, C:0.06, G:0.01, T:0.66
Consensus pattern (36 bp):
TTTTATATTTTAATTTAATTTTATTTAATTCCTTTA
Found at i:55494 original size:2 final size:2
Alignment explanation
Indices: 55489--55523 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
55479 GATATATTTG
55489 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
55524 TACAAATGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:66083 original size:21 final size:21
Alignment explanation
Indices: 66054--66106 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
66044 ATTATGACTA
66054 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* *
66075 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTTCCAAAT
*
66096 TCGCAATGCGA
1 TCGCATTGCGA
66107 ATACGTAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:66121 original size:20 final size:20
Alignment explanation
Indices: 66096--66248 Score: 261
Period size: 20 Copynumber: 7.7 Consensus size: 20
66086 TTTTCCTAAT
66096 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
66116 TCGCAACGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
66136 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
66156 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
66176 TCGTAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
66196 TCGTAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
66216 TCGCAATGCAAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
66236 TCGCAACGCGAAT
1 TCGCAATGCGAAT
66249 CTGACTATCG
Statistics
Matches: 126, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 126 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:66342 original size:20 final size:20
Alignment explanation
Indices: 66235--66341 Score: 142
Period size: 20 Copynumber: 5.3 Consensus size: 20
66225 AAATACGTAA
*
66235 ATCGCAACGCGAATCTGACT
1 ATCGCAACGCGATTCTGACT
** *
66255 ATCGCAATACGATTATGACT
1 ATCGCAACGCGATTCTGACT
*
66275 ATCGCAACGAGATTCTGACT
1 ATCGCAACGCGATTCTGACT
* *
66295 ATCGTAACGTGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
66315 ATCGCAATGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
66335 ATCGCAA
1 ATCGCAA
66342 TACTGAATTT
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 74 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:67196 original size:24 final size:24
Alignment explanation
Indices: 67169--67222 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
67159 GTATTCAAAA
67169 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
67193 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
67217 TTTGAT
1 TTTGAT
67223 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Done.