genome.fa.s3813.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003813.1 Hibiscus syriacus cultivar Beakdansim tig00008174_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94031

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582--622	21	2.0	20	86	13	57	24	17	9	48	1.76
3077--3113	2	18.5	2	100	0	74	48	0	0	51	1.00
5366--5480	60	1.9	60	85	7	162	37	5	23	33	1.77
5711--5787	31	2.5	31	80	0	91	24	11	14	49	1.76
7229--7273	23	1.9	24	81	4	56	53	4	4	37	1.41
7885--7935	25	2.0	25	92	0	84	27	5	0	66	1.14
8085--8132	22	2.2	20	82	10	51	37	6	4	52	1.46
14186--14395	30	7.1	29	84	3	231	24	22	19	33	1.97
14188--14381	90	2.2	89	87	4	284	25	22	20	31	1.98
18087--18183	30	3.2	30	92	0	158	27	26	17	27	1.98
18087--18196	30	3.7	30	91	0	157	27	25	18	29	1.98
18208--18341	49	2.8	48	88	4	189	25	13	19	41	1.88
22334--22674	30	11.4	30	86	1	441	24	25	18	31	1.97
24065--24102	19	2.0	20	89	5	60	42	0	13	44	1.43
28578--28715	68	2.0	68	97	0	258	43	11	13	31	1.80
30893--30973	16	5.1	16	66	18	53	48	2	0	49	1.14
30887--31011	59	2.2	57	85	5	162	46	4	0	48	1.29
31054--31093	17	2.3	18	82	8	55	35	0	2	62	1.09
33431--33493	30	2.1	30	90	0	99	33	7	11	47	1.68
33966--34272	94	3.3	94	95	0	533	35	8	16	40	1.78
34051--34107	26	2.1	27	87	3	80	33	8	10	47	1.69
34145--34201	26	2.1	27	87	3	80	33	8	10	47	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34140--34439	166	1.8	167	93	0	521	35	8	15	41	1.76
34046--34540	260	1.9	260	91	1	823	36	8	15	40	1.77
34307--34531	95	2.4	94	91	2	364	35	8	16	40	1.79
36592--36696	5	21.0	5	100	0	210	20	0	40	40	1.52
38284--38318	2	17.5	2	87	0	52	45	0	54	0	0.99
41413--41473	31	1.9	32	87	9	90	44	4	4	45	1.46
41413--41503	31	3.0	30	81	10	87	41	4	6	47	1.49
41767--41803	13	2.8	13	88	12	58	56	0	0	43	0.99
41999--42083	27	3.1	27	98	0	161	27	22	15	35	1.94
42536--42636	39	2.6	39	98	0	193	33	18	20	26	1.96
42735--42766	6	5.5	6	96	3	57	0	15	53	31	1.43
42859--42930	21	3.5	20	80	14	83	36	23	20	19	1.95
42852--42937	42	2.0	42	93	0	145	34	23	19	22	1.96
42852--42917	19	3.3	19	78	15	78	33	21	22	22	1.97
52192--52222	3	10.3	3	100	0	62	0	32	0	67	0.91
55900--55940	21	2.0	21	85	0	55	29	29	24	17	1.97
56744--56868	62	2.0	62	89	3	189	20	20	22	36	1.95
56744--56853	31	3.5	31	94	0	193	19	20	21	38	1.94
57141--57176	17	2.1	17	100	0	72	30	5	11	52	1.59
57453--57865	206	2.0	206	98	0	799	30	11	20	37	1.88
60265--60309	21	2.1	21	87	0	63	31	28	24	15	1.96
61110--61234	62	2.0	62	89	3	189	20	20	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61110--61219	31	3.5	31	94	0	193	19	20	21	38	1.94
61507--61542	17	2.1	17	100	0	72	30	5	11	52	1.59
68587--68638	19	2.7	19	78	0	59	23	23	17	36	1.95
75424--75501	39	2.0	39	100	0	156	25	15	23	35	1.94
82969--83033	27	2.3	29	82	10	91	49	33	4	12	1.61
83035--83098	34	1.9	33	87	6	94	45	23	3	28	1.68
86668--86738	2	35.5	2	100	0	142	49	0	0	50	1.00
87515--87820	143	2.1	144	85	3	436	20	25	22	31	1.98
88874--88922	15	3.1	15	76	5	53	26	46	0	26	1.53
88874--88930	17	3.5	16	76	9	62	22	45	0	31	1.53
91193--91242	20	2.5	20	86	0	64	48	12	2	38	1.52

Tables:   1

The End!