Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003814.1 Hibiscus syriacus cultivar Beakdansim tig00008176_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100971
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:5600 original size:16 final size:16
Alignment explanation
Indices: 5579--5631 Score: 72
Period size: 15 Copynumber: 3.3 Consensus size: 16
5569 TGTGCAAATC
5579 CGGGTACCCGGATTTT
1 CGGGTACCCGGATTTT
*
5595 CGGGTACCC-GATTTC
1 CGGGTACCCGGATTTT
*
5610 CGGGTACCCGGAACTTT
1 CGGGTACCCGG-ATTTT
5627 CGGGT
1 CGGGT
5632 CGACGATTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 14 0.44
16 10 0.31
17 8 0.25
ACGTcount: A:0.13, C:0.28, G:0.32, T:0.26
Consensus pattern (16 bp):
CGGGTACCCGGATTTT
Found at i:5639 original size:32 final size:31
Alignment explanation
Indices: 5577--5641 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 31
5567 GGTGTGCAAA
* *
5577 TCCGGGTACCCGGATTTTCGGGTACCCGATT
1 TCCGGGTACCCGGACTTTCGGGTACACGATT
5608 TCCGGGTACCCGGAACTTTCGGGT-CGACGATT
1 TCCGGGTACCCGG-ACTTTCGGGTAC-ACGATT
5640 TC
1 TC
5642 TCGGCCCGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
31 14 0.47
32 16 0.53
ACGTcount: A:0.14, C:0.29, G:0.29, T:0.28
Consensus pattern (31 bp):
TCCGGGTACCCGGACTTTCGGGTACACGATT
Found at i:7016 original size:22 final size:23
Alignment explanation
Indices: 6988--7033 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
6978 CCTCTATGTT
6988 GAAAGTCAATTAAG-GGGCTAAG
1 GAAAGTCAATTAAGCGGGCTAAG
*
7010 GAAAGTCAATTAAGCGGGTTAAG
1 GAAAGTCAATTAAGCGGGCTAAG
7033 G
1 G
7034 GGCATCAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.39, C:0.09, G:0.33, T:0.20
Consensus pattern (23 bp):
GAAAGTCAATTAAGCGGGCTAAG
Found at i:7516 original size:16 final size:17
Alignment explanation
Indices: 7495--7526 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7485 TATTCATATG
7495 AATAGT-AAATTTTGTT
1 AATAGTAAAATTTTGTT
7511 AATAGTAAAATTTTGT
1 AATAGTAAAATTTTGT
7527 CGGCGATACG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (17 bp):
AATAGTAAAATTTTGTT
Found at i:17745 original size:14 final size:14
Alignment explanation
Indices: 17726--17758 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
17716 ATTTCTATGT
*
17726 AGGGAATTATTTGC
1 AGGGAATTATTTAC
17740 AGGGAATTATTTAC
1 AGGGAATTATTTAC
17754 AGGGA
1 AGGGA
17759 TTACTCCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.30, T:0.30
Consensus pattern (14 bp):
AGGGAATTATTTAC
Found at i:29525 original size:9 final size:9
Alignment explanation
Indices: 29511--29543 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
29501 GCCTGAGAAG
29511 AAAAAAAAT
1 AAAAAAAAT
29520 -AAAAAAAT
1 AAAAAAAAT
29528 AAAAAAAAT
1 AAAAAAAAT
*
29537 AGAAAAA
1 AAAAAAA
29544 GAGAGAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.88, C:0.00, G:0.03, T:0.09
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:30593 original size:121 final size:122
Alignment explanation
Indices: 30407--30827 Score: 580
Period size: 121 Copynumber: 3.5 Consensus size: 122
30397 TCACAAAAGG
* * * * *
30407 AGAAGGAA-GTAGATCATCATCAAGATCTTGTCCGATTTCATCACAGAATGAGGTGGATAGACAT
1 AGAAGGAAGGTAGATCAACATCGAGATCTTGTTCGATTCCATCACAGAAGGAGGTGGATAGACAT
*
30471 TTTCATCCAGCACATAAGCAGTTGGATCAGCTTCAACATTTTTCTCGATTCTATCAT
66 TTTCATCCAGCACATAAGGAGTTGGATCAGCTTCAACATTTTTCTCGATTCTATCAT
*
30528 AGAA-GAAGGTAGATCAACATCGAGATCTTGTTCGATTCCATCACAGAAGGAGGTGGATAGGCAT
1 AGAAGGAAGGTAGATCAACATCGAGATCTTGTTCGATTCCATCACAGAAGGAGGTGGATAGACAT
* * *
30592 TTTCATCCAACACATAAGGAATTAGATCAGCTTCAACATTTTTCTCGATTCTATCAT
66 TTTCATCCAGCACATAAGGAGTTGGATCAGCTTCAACATTTTTCTCGATTCTATCAT
* * * *
30649 AGAATG-AGGTAGATCAACATCGAGATCTTGTTCGATTCCATCATAGAAGGAGGTTGATAGAAAT
1 AGAAGGAAGGTAGATCAACATCGAGATCTTGTTCGATTCCATCACAGAAGGAGGTGGATAGACAT
* * * * * *
30713 TTTCATCCTGCACATAAGGAGTTGGATAAGCTTCAACATTCTGCTTGATTCTATCAC
66 TTTCATCCAGCACATAAGGAGTTGGATCAGCTTCAACATTTTTCTCGATTCTATCAT
** * * * *
30770 AGAAGG-AGGTAGATCAGTAACGATATCTCGTACGATTCCATCACAGAAGGAGGTGGAT
1 AGAAGGAAGGTAGATCAACATCGAGATCTTGTTCGATTCCATCACAGAAGGAGGTGGAT
30828 CAACGTTTCA
Statistics
Matches: 266, Mismatches: 32, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
120 3 0.01
121 262 0.98
122 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (122 bp):
AGAAGGAAGGTAGATCAACATCGAGATCTTGTTCGATTCCATCACAGAAGGAGGTGGATAGACAT
TTTCATCCAGCACATAAGGAGTTGGATCAGCTTCAACATTTTTCTCGATTCTATCAT
Found at i:35538 original size:2 final size:2
Alignment explanation
Indices: 35531--35567 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
35521 GTTCTATCCC
35531 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
35568 TTAGTTATCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:36208 original size:25 final size:25
Alignment explanation
Indices: 36179--36228 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
36169 AACATTTAAA
*
36179 AAAAAAGAAAATATGTGATTATTTTG
1 AAAAAA-ATAATATGTGATTATTTTG
* *
36205 AAAAAAATAATCTGTGTTTATTTT
1 AAAAAAATAATATGTGATTATTTT
36229 TTCCTCATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.46, C:0.02, G:0.12, T:0.40
Consensus pattern (25 bp):
AAAAAAATAATATGTGATTATTTTG
Found at i:37696 original size:6 final size:6
Alignment explanation
Indices: 37685--37745 Score: 95
Period size: 6 Copynumber: 10.2 Consensus size: 6
37675 GACACGTATT
* * *
37685 ACCACG ACCACG ACCACG ACCACG ACCTCG ACCTCG ACCTCG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
37733 ACCACG ACCACG A
1 ACCACG ACCACG A
37746 GCCGAGCCGA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 53 1.00
ACGTcount: A:0.30, C:0.49, G:0.16, T:0.05
Consensus pattern (6 bp):
ACCACG
Found at i:37753 original size:5 final size:5
Alignment explanation
Indices: 37743--37791 Score: 62
Period size: 5 Copynumber: 9.8 Consensus size: 5
37733 ACCACGACCA
* * * *
37743 CGAGC CGAGC CGAGC CGAGC CGTGC CGTGC CGTGC CGAGC CGAGA CGAG
1 CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAG
37792 ACGGACGGAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.16, C:0.37, G:0.41, T:0.06
Consensus pattern (5 bp):
CGAGC
Found at i:43660 original size:6 final size:6
Alignment explanation
Indices: 43649--43709 Score: 113
Period size: 6 Copynumber: 10.2 Consensus size: 6
43639 GACACGTATT
43649 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
*
43697 ACCTCG ACCACG A
1 ACCACG ACCACG A
43710 GCCGAGCCGA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 53 1.00
ACGTcount: A:0.33, C:0.49, G:0.16, T:0.02
Consensus pattern (6 bp):
ACCACG
Found at i:43717 original size:5 final size:5
Alignment explanation
Indices: 43707--43765 Score: 73
Period size: 5 Copynumber: 11.8 Consensus size: 5
43697 ACCTCGACCA
* * * *
43707 CGAGC CGAGC CGAGC CGAGC CGTGC CGTGC CGTGC CGTGC CGAGC CGAGC
1 CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC
*
43757 CGAGA CGAG
1 CGAGC CGAG
43766 ACGGACGGAC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 51 1.00
ACGTcount: A:0.15, C:0.37, G:0.41, T:0.07
Consensus pattern (5 bp):
CGAGC
Found at i:45027 original size:29 final size:30
Alignment explanation
Indices: 44963--45029 Score: 77
Period size: 29 Copynumber: 2.2 Consensus size: 30
44953 CAACGGAGTG
44963 GTATAATTGAAACAAAAATAAAAGTTCAGCAT
1 GTATAATTG-AACAAAAATAAAAGTTCA-CAT
*
44995 -TATAATTG-ACAAAATTAAAAGTTCA-ATT
1 GTATAATTGAACAAAAATAAAAGTTCACA-T
45023 GTATAAT
1 GTATAAT
45030 CGATACAATG
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
27 1 0.03
28 1 0.03
29 22 0.69
31 8 0.25
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.31
Consensus pattern (30 bp):
GTATAATTGAACAAAAATAAAAGTTCACAT
Found at i:46526 original size:21 final size:21
Alignment explanation
Indices: 46497--46536 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
46487 TCAATTGCGA
46497 TCAACGGTCAACGACCAACAG
1 TCAACGGTCAACGACCAACAG
* *
46518 TCAAGGGTCAACGATCAAC
1 TCAACGGTCAACGACCAAC
46537 GGGTGACCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.30, G:0.20, T:0.12
Consensus pattern (21 bp):
TCAACGGTCAACGACCAACAG
Found at i:47370 original size:332 final size:332
Alignment explanation
Indices: 46764--47414 Score: 1293
Period size: 332 Copynumber: 2.0 Consensus size: 332
46754 AACTTATCAA
46764 GCTCGGTTCACAAAGGTGAACGACAGAGACTCGATTTCGCAACGTCGAAAACTTAATATTCCTCA
1 GCTCGGTTCACAAAGGTGAACGACAGAGACTCGATTTCGCAACGTCGAAAACTTAATATTCCTCA
46829 CCCCTCCCACGTTGATGGCAACAGAGACAAGATGGACAACGGTGGACTCGGTATTATGCAAGGAA
66 CCCCTCCCACGTTGATGGCAACAGAGACAAGATGGACAACGGTGGACTCGGTATTATGCAAGGAA
*
46894 CACGATGGTACGGAAGGTGTTGAAAACAGAGCAATGGTCGGTGACGAAACGTCGATTGAAGTTTT
131 CACGATGGTACGGAAGGTGTTGAAAACAGAACAATGGTCGGTGACGAAACGTCGATTGAAGTTTT
46959 TTGCTAAAGGAGGAAAGCTTGAAGAGAGGAATGGGGTTTTTAAACAAGGAAACTTTCTAAATTTG
196 TTGCTAAAGGAGGAAAGCTTGAAGAGAGGAATGGGGTTTTTAAACAAGGAAACTTTCTAAATTTG
47024 GGATTACATATTCCTTAAAAGGAAAATGGTAAAATTATGCCATAGGTCTTCTATTTTTTTCGACT
261 GGATTACATATTCCTTAAAAGGAAAATGGTAAAATTATGCCATAGGTCTTCTATTTTTTTCGACT
47089 CTCGAAG
326 CTCGAAG
47096 GCTCGGTTCACAAAGGTGAACGACAGAGACTCGATTTCGCAACGTCGAAAACTTAATATTCCTCA
1 GCTCGGTTCACAAAGGTGAACGACAGAGACTCGATTTCGCAACGTCGAAAACTTAATATTCCTCA
47161 CCCCTCCCACGTTGATGGCAACAGAGACAAGATGGACAACGGTGGACTCGGTATTATGCAAGGAA
66 CCCCTCCCACGTTGATGGCAACAGAGACAAGATGGACAACGGTGGACTCGGTATTATGCAAGGAA
47226 CACGATGGTACGGAAGGTGTTGAAAACAGAACAATGGTCGGTGACGAAACGTCGATTGAAGTTTT
131 CACGATGGTACGGAAGGTGTTGAAAACAGAACAATGGTCGGTGACGAAACGTCGATTGAAGTTTT
47291 TTGCTAAAGGAGGAAAGCTTGAAGAGAGGAATGGGGTTTTTAAACAAGGAAACTTTCTAAATTTG
196 TTGCTAAAGGAGGAAAGCTTGAAGAGAGGAATGGGGTTTTTAAACAAGGAAACTTTCTAAATTTG
47356 GGATTACATATTCCTTAAAAGGAAAATGGTAAAATTATGCCATAGGTCTTCTATTTTTT
261 GGATTACATATTCCTTAAAAGGAAAATGGTAAAATTATGCCATAGGTCTTCTATTTTTT
47415 ATGCTTTCTA
Statistics
Matches: 318, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
332 318 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.26
Consensus pattern (332 bp):
GCTCGGTTCACAAAGGTGAACGACAGAGACTCGATTTCGCAACGTCGAAAACTTAATATTCCTCA
CCCCTCCCACGTTGATGGCAACAGAGACAAGATGGACAACGGTGGACTCGGTATTATGCAAGGAA
CACGATGGTACGGAAGGTGTTGAAAACAGAACAATGGTCGGTGACGAAACGTCGATTGAAGTTTT
TTGCTAAAGGAGGAAAGCTTGAAGAGAGGAATGGGGTTTTTAAACAAGGAAACTTTCTAAATTTG
GGATTACATATTCCTTAAAAGGAAAATGGTAAAATTATGCCATAGGTCTTCTATTTTTTTCGACT
CTCGAAG
Found at i:54501 original size:26 final size:26
Alignment explanation
Indices: 54467--54516 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
54457 TCCTTTATGT
* *
54467 GTTTTTTTTTGTAGTTGTTGTTTGTG
1 GTTTCTTTTGGTAGTTGTTGTTTGTG
* *
54493 GTTTCTTTTGGTTGTTGTTTTTTG
1 GTTTCTTTTGGTAGTTGTTGTTTG
54517 CTCTTCGTTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.02, C:0.02, G:0.26, T:0.70
Consensus pattern (26 bp):
GTTTCTTTTGGTAGTTGTTGTTTGTG
Found at i:55021 original size:2 final size:2
Alignment explanation
Indices: 55014--55112 Score: 198
Period size: 2 Copynumber: 49.5 Consensus size: 2
55004 CTGCCCTAGT
55014 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
55056 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
55098 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
55113 CATAGACATA
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 97 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:70087 original size:16 final size:15
Alignment explanation
Indices: 70044--70088 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 15
70034 GGTGTACGTG
70044 TTATTTATTATATTA
1 TTATTTATTATATTA
70059 TATATTT-TTATATTA
1 T-TATTTATTATATTA
70074 TTATTTAGTTATATT
1 TTATTTA-TTATATT
70089 TATGAATATG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 10 0.37
16 12 0.44
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (15 bp):
TTATTTATTATATTA
Found at i:71257 original size:5 final size:5
Alignment explanation
Indices: 71249--71292 Score: 88
Period size: 5 Copynumber: 8.8 Consensus size: 5
71239 TTTATTTTTC
71249 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA ATTT
1 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA ATTT
71293 TATTATTTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
ATTTA
Found at i:75010 original size:24 final size:24
Alignment explanation
Indices: 74961--75017 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
74951 GACTCATCTG
* *
74961 CTGTAAAAACACAAGCTTTATCTA
1 CTGTAAAAGCACAAGCTTTATATA
*
74985 CTGTAAAAGCACAAG-TTTCGTATA
1 CTGTAAAAGCACAAGCTTT-ATATA
*
75009 CTGCAAAAG
1 CTGTAAAAG
75018 AACATGCCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 3 0.11
24 25 0.89
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.26
Consensus pattern (24 bp):
CTGTAAAAGCACAAGCTTTATATA
Found at i:79605 original size:22 final size:22
Alignment explanation
Indices: 79573--79651 Score: 88
Period size: 22 Copynumber: 3.5 Consensus size: 22
79563 AATATTAAGA
*
79573 GGTATCGATACCCCTATGAATG
1 GGTATCAATACCCCTATGAATG
* *
79595 GGTATCAATACCCTATATAAATG
1 GGTATCAATACCC-CTATGAATG
* *
79618 GGTA-CTGATACCCCTATGAAAG
1 GGTATC-AATACCCCTATGAATG
79640 GGTATCAATACC
1 GGTATCAATACC
79652 ACATGAAGGT
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
22 28 0.61
23 18 0.39
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (22 bp):
GGTATCAATACCCCTATGAATG
Found at i:82224 original size:17 final size:17
Alignment explanation
Indices: 82202--82237 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
82192 AATTGGTAAC
82202 AATTGGTATCCTTTTGT
1 AATTGGTATCCTTTTGT
82219 AATTGGTATCCTTTTGT
1 AATTGGTATCCTTTTGT
82236 AA
1 AA
82238 ACAATTGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.11, G:0.17, T:0.50
Consensus pattern (17 bp):
AATTGGTATCCTTTTGT
Found at i:82249 original size:21 final size:20
Alignment explanation
Indices: 82197--82253 Score: 68
Period size: 17 Copynumber: 3.0 Consensus size: 20
82187 CCAACAATTG
82197 GTAACAATTGGTATCCTTTT
1 GTAACAATTGGTATCCTTTT
82217 GT---AATTGGTATCCTTTT
1 GTAACAATTGGTATCCTTTT
*
82234 GTAAACAATTGATAT-CTTTT
1 GT-AACAATTGGTATCCTTTT
82254 TCATTAAACA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
17 17 0.53
20 7 0.22
21 8 0.25
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.47
Consensus pattern (20 bp):
GTAACAATTGGTATCCTTTT
Found at i:82509 original size:23 final size:22
Alignment explanation
Indices: 82475--82548 Score: 96
Period size: 22 Copynumber: 3.3 Consensus size: 22
82465 AGAGGTACCG
82475 ATACCCCTATGAATGAGTATCA
1 ATACCCCTATGAATGAGTATCA
* *
82497 ATACCCGCTATGAATGTGTATCG
1 ATACCC-CTATGAATGAGTATCA
*
82520 ATACCCCTATGAA-AAGGTATCA
1 ATACCCCTATGAATGA-GTATCA
82542 ATACCCC
1 ATACCCC
82549 CCATGAAGGC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
22 25 0.56
23 20 0.44
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.26
Consensus pattern (22 bp):
ATACCCCTATGAATGAGTATCA
Found at i:82532 original size:22 final size:22
Alignment explanation
Indices: 82473--82532 Score: 93
Period size: 23 Copynumber: 2.7 Consensus size: 22
82463 TAAGAGGTAC
82473 CGATACCCCTATGAATGAGTAT
1 CGATACCCCTATGAATGAGTAT
* *
82495 CAATACCCGCTATGAATGTGTAT
1 CGATACCC-CTATGAATGAGTAT
82518 CGATACCCCTATGAA
1 CGATACCCCTATGAA
82533 AAGGTATCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 14 0.41
23 20 0.59
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (22 bp):
CGATACCCCTATGAATGAGTAT
Found at i:82554 original size:23 final size:24
Alignment explanation
Indices: 82478--82555 Score: 74
Period size: 23 Copynumber: 3.4 Consensus size: 24
82468 GGTACCGATA
* *
82478 CCCCTATG-AATGAGTATCAATAC
1 CCCCTATGAAAAGTGTATCAATAC
* * *
82501 CCGCTATG-AATGTGTATCGATA-
1 CCCCTATGAAAAGTGTATCAATAC
82523 CCCCTATGAAAAG-GTATCAATAC
1 CCCCTATGAAAAGTGTATCAATAC
*
82546 CCCCCATGAA
1 CCCCTATGAA
82556 GGCTCAAATT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
22 15 0.33
23 31 0.67
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.24
Consensus pattern (24 bp):
CCCCTATGAAAAGTGTATCAATAC
Found at i:85332 original size:21 final size:21
Alignment explanation
Indices: 85308--85361 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
85298 GACATTTACA
85308 AAAATAATAAATCATGTTTAT
1 AAAATAATAAATCATGTTTAT
85329 AAAATAATAAATCATGTTTAT
1 AAAATAATAAATCATGTTTAT
85350 AAAATAATAAAT
1 AAAATAATAAAT
85362 ATAATCTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (21 bp):
AAAATAATAAATCATGTTTAT
Found at i:85521 original size:2 final size:2
Alignment explanation
Indices: 85514--85553 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
85504 CATAATATTC
* *
85514 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AG AT TT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
85554 CATAAACAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:86889 original size:118 final size:118
Alignment explanation
Indices: 86749--86980 Score: 287
Period size: 118 Copynumber: 2.0 Consensus size: 118
86739 ATATTAATTT
* *
86749 ATATATATTTATAAATAAAATATTTATTTATTT-AGAATAATCAGAAAA-GGACT-TCTAGGTGC
1 ATATATATTTATAAATAAAATATTTATTTATTTAAAAAT-ATCAGAAAATGGA-TATCCAGGTGC
* *
86811 CTTAAGACAGCTCTTTTCTTCGATATT-AAAAA-AAATAAATAAATATTAAAAATAG
64 CTTAAGACAG-TCCTTTCTT-AATATTGAAAAATAAATAAATAAATATTAAAAATAG
* *
86866 ATATA-ATTTATAAAAGTAAAATATTTATTTATTTAAAAATATCAGAAAATGGATATCCAGTTGT
1 ATATATATTTAT-AAA-TAAAATATTTATTTATTTAAAAATATCAGAAAATGGATATCCAGGTGC
* **
86930 TTTAAGATTGTCCTTTCTTAATATTGAAAAATAAATAAATAAATATTAAAA
64 CTTAAGACAGTCCTTTCTTAATATTGAAAAATAAATAAATAAATATTAAAA
86981 CAGGATTAAA
Statistics
Matches: 99, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
116 6 0.06
117 13 0.13
118 41 0.41
119 39 0.39
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.38
Consensus pattern (118 bp):
ATATATATTTATAAATAAAATATTTATTTATTTAAAAATATCAGAAAATGGATATCCAGGTGCCT
TAAGACAGTCCTTTCTTAATATTGAAAAATAAATAAATAAATATTAAAAATAG
Found at i:88529 original size:3 final size:3
Alignment explanation
Indices: 88508--88586 Score: 73
Period size: 3 Copynumber: 28.3 Consensus size: 3
88498 ATTTGGGCCT
*
88508 ATA AT- ATA ATA A-A ATTA ATA ATA A-A ATA ATA ATA ATA AT- ATT
1 ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
88550 ATA AT- ATA ATA ATA ATA TTA A-A ACA A-A ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
88587 ATAAAACAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 16
0.77 0.04 0.19
Matches are distributed among these distances:
2 14 0.22
3 49 0.75
4 2 0.03
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:88535 original size:22 final size:23
Alignment explanation
Indices: 88513--88587 Score: 84
Period size: 22 Copynumber: 3.3 Consensus size: 23
88503 GGCCTATAAT
88513 ATAATAAAATTAATAATAAAATA
1 ATAATAAAATTAATAATAAAATA
* *
88536 ATAATAATAA-T-ATTATAATATA
1 ATAATAA-AATTAATAATAAAATA
* *
88558 ATAATAATATTAA-AACAAAATA
1 ATAATAAAATTAATAATAAAATA
88580 ATAATAAA
1 ATAATAAA
88588 TAAAACAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
21 1 0.02
22 30 0.71
23 9 0.21
24 2 0.05
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (23 bp):
ATAATAAAATTAATAATAAAATA
Found at i:88536 original size:25 final size:25
Alignment explanation
Indices: 88508--88572 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
88498 ATTTGGGCCT
88508 ATAAT-ATAATAAAATTAATAATAAA
1 ATAATAATAATAAAATT-ATAATAAA
* *
88533 ATAATAATAATAATATTATAATATA
1 ATAATAATAATAAAATTATAATAAA
*
88558 ATAATAATATTAAAA
1 ATAATAATAATAAAA
88573 CAAAATAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 25 0.71
26 10 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (25 bp):
ATAATAATAATAAAATTATAATAAA
Found at i:88539 original size:11 final size:11
Alignment explanation
Indices: 88513--88587 Score: 73
Period size: 11 Copynumber: 6.7 Consensus size: 11
88503 GGCCTATAAT
88513 ATAATAAAATTA
1 ATAATAAAA-TA
88525 ATAATAAAATA
1 ATAATAAAATA
88536 ATAATAATAAT-
1 ATAATAA-AATA
* *
88547 ATTATAATATA
1 ATAATAAAATA
*
88558 ATAATAATATTA
1 ATAATAA-AATA
*
88570 A-AACAAAATA
1 ATAATAAAATA
88580 ATAATAAA
1 ATAATAAA
88588 TAAAACAAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
10 6 0.12
11 30 0.59
12 15 0.29
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (11 bp):
ATAATAAAATA
Found at i:88583 original size:25 final size:24
Alignment explanation
Indices: 88508--88586 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 24
88498 ATTTGGGCCT
*
88508 ATAAT-ATAATAAAATTAATAATAAA
1 ATAATAATAATAATATTAA-AA-AAA
*
88533 ATAATAATAATAATATT----ATA
1 ATAATAATAATAATATTAAAAAAA
88553 AT-ATAATAATAATATTAAAACAAA
1 ATAATAATAATAATATTAAAA-AAA
88577 ATAATAATAA
1 ATAATAATAA
88587 ATAAAACAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
19 14 0.32
20 4 0.09
24 4 0.09
25 12 0.27
26 10 0.23
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (24 bp):
ATAATAATAATAATATTAAAAAAA
Found at i:88597 original size:19 final size:22
Alignment explanation
Indices: 88513--88596 Score: 82
Period size: 22 Copynumber: 3.9 Consensus size: 22
88503 GGCCTATAAT
* *
88513 ATAATAAAATTAATAATAAAATA
1 ATAATAATATTAA-AACAAAATA
* ** * *
88536 ATAATAATAATATTATAATATA
1 ATAATAATATTAAAACAAAATA
88558 ATAATAATATTAAAACAAAATA
1 ATAATAATATTAAAACAAAATA
88580 ATAATAA-A-TAAAACAAA
1 ATAATAATATTAAAACAAA
88597 TGAAATAAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
20 9 0.18
21 1 0.02
22 31 0.61
23 10 0.20
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (22 bp):
ATAATAATATTAAAACAAAATA
Found at i:89023 original size:113 final size:112
Alignment explanation
Indices: 88840--89379 Score: 839
Period size: 113 Copynumber: 4.8 Consensus size: 112
88830 AGAATCATGC
*
88840 AAAAGATTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAG-TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * * *
88905 TATGAACTCTCTCTGGAAAAGTTAATCCATTGAGTGATGAATTCGAGCA
65 TATGAACTCTC-CTGGAAATGTTGATCCATCGAATGATGAATTCAAGCA
*
88954 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
89019 ATGAACTCACCCTGGCAATGTTGATCCATCGAATGATGAATTCAAGCG
66 ATGAACTC-TCCTGGAAATGTTGATCCATCGAATGATGAATTCAAGCA
*
89067 AAAAGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
** * **
89132 ATGAACTGGACCTGGTAATGTTGATCCATCGAATGATGAATTCAAGTG
66 ATGAACT-CTCCTGGAAATGTTGATCCATCGAATGATGAATTCAAGCA
*
89180 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCATTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* *
89245 ATGAACT-TGACCTGGTAATGTTGATCTATCGAATGATGAATTCAAGCA
66 ATGAACTCT--CCTGGAAATGTTGATCCATCGAATGATGAATTCAAGCA
89293 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
89358 ATGAACTCTACCTGGAAATGTT
66 ATGAACTCT-CCTGGAAATGTT
89380 TTAAGAAAAA
Statistics
Matches: 397, Mismatches: 24, Indels: 11
0.92 0.06 0.03
Matches are distributed among these distances:
113 390 0.98
114 7 0.02
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (112 bp):
AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTCTCCTGGAAATGTTGATCCATCGAATGATGAATTCAAGCA
Found at i:89749 original size:76 final size:76
Alignment explanation
Indices: 89409--89722 Score: 565
Period size: 76 Copynumber: 4.1 Consensus size: 76
89399 CACTGTAGAG
* * * *
89409 CTTACAGCTGAACCGAAGGTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
1 CTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
*
89474 GCACTACAGGA
66 GCACTGCAGGA
*
89485 CTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCTAAGGCTTTTTGGAAACATCAT
1 CTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
89550 GCACTGCAGGA
66 GCACTGCAGGA
89561 CTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
1 CTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
89626 GCACTGCAGGA
66 GCACTGCAGGA
*
89637 CTTACAGATGACCCTAAGGCTTTGAGAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
1 CTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
89702 GCACTGCAGGA
66 GCACTGCAGGA
89713 CTTACAGATG
1 CTTACAGATG
89723 TTGGAAATAG
Statistics
Matches: 230, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 230 1.00
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (76 bp):
CTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
GCACTGCAGGA
Found at i:90011 original size:164 final size:166
Alignment explanation
Indices: 89723--90047 Score: 519
Period size: 164 Copynumber: 2.0 Consensus size: 166
89713 CTTACAGATG
*
89723 TTGGAAATAGTTTAATAAGTAAAAAAACTAAGGAAATCGTTTTCTTACTTTTCAACAATTTCATT
1 TTGGAAATAGTTTAATAAGTAAAAAAACTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCATT
** * ** *
89788 TTTAAAAAAGATTGAATGAGAAACTATGGAAATTGTTTTCTCATTATTTTTCAAAATAACATGTT
66 TTTAAAAAAGATAAAATAAGAAACTATGGAAATCATTTTCTCATTATTTTTCAAAATAACATGTC
*
89853 GATTGGGTAACATGCCCCAATCTAAAGATAAGGCTA
131 GATTAGGTAACATGCCCCAATCTAAAGATAAGGCTA
*
89889 TTGGAAATAGTTTACTAAGT-AAAAAACTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCA-T
1 TTGGAAATAGTTTAATAAGTAAAAAAACTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCATT
* **
89952 TTTAGAAAAGATAAAATAAGAAACTATGGAAATCATTTTCTCATTATTTTTTGAAATAACATGTC
66 TTTAAAAAAGATAAAATAAGAAACTATGGAAATCATTTTCTCATTATTTTTCAAAATAACATGTC
*
90017 GATTAGGTAACATGCCCCAATCTCAAGATAA
131 GATTAGGTAACATGCCCCAATCTAAAGATAA
90048 TGTTCATTTT
Statistics
Matches: 146, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
164 86 0.59
165 41 0.28
166 19 0.13
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (166 bp):
TTGGAAATAGTTTAATAAGTAAAAAAACTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCATT
TTTAAAAAAGATAAAATAAGAAACTATGGAAATCATTTTCTCATTATTTTTCAAAATAACATGTC
GATTAGGTAACATGCCCCAATCTAAAGATAAGGCTA
Found at i:90589 original size:22 final size:22
Alignment explanation
Indices: 90561--90615 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
90551 CATAAAGCTT
90561 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
90583 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
90605 TCATCTTTGAA
1 TCATCTTTGAA
90616 GAGTGTAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:97501 original size:21 final size:21
Alignment explanation
Indices: 97477--97516 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
97467 AAAAAGTAAG
97477 AATACAAAATGAAAATGCACA
1 AATACAAAATGAAAATGCACA
*
97498 AATACAAAATGTAAATGCA
1 AATACAAAATGAAAATGCA
97517 TGTATGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.10, T:0.17
Consensus pattern (21 bp):
AATACAAAATGAAAATGCACA
Found at i:100337 original size:46 final size:43
Alignment explanation
Indices: 100277--100362 Score: 100
Period size: 44 Copynumber: 1.9 Consensus size: 43
100267 TAAATTGTCT
* * *
100277 CTATTATTAGAAATTTAAAAATTCAAAATATATTTAATTTATAATC
1 CTATTATTACAAA-TT-AAAATTAAAAAAATA-TTAATTTATAATC
* *
100323 CTATTATTTCAAATTATAATTAAAAAAATATTAATTTATA
1 CTATTATTACAAATTAAAATTAAAAAAATATTAATTTATA
100363 TATATTTATA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
43 10 0.29
44 12 0.34
45 2 0.06
46 11 0.31
ACGTcount: A:0.49, C:0.06, G:0.01, T:0.44
Consensus pattern (43 bp):
CTATTATTACAAATTAAAATTAAAAAAATATTAATTTATAATC
Found at i:100569 original size:106 final size:104
Alignment explanation
Indices: 100360--100574 Score: 233
Period size: 106 Copynumber: 2.0 Consensus size: 104
100350 ATATTAATTT
* *
100360 ATATATATTTATAAATAAAATATTTATTTATTTAGAAATATCAGAAAATGACTTCTAGGTGCCTT
1 ATATATATTTATAAATAAAATATTTATTTATTTAAAAATATCAGAAAATGACTTCCAGGTGCCTT
* * *
100425 AAGACTCTTTTCTTCGATATTAAAAAAATATTAAAAATAG
66 AAGACTCATTTCTTCAATATTAAAAAAATA-TAAAAATAA
* *
100465 ATATA-ATTTATAAAAGTAAGATATTTATTTATTTAAAAATATCAGAAAATGGA-TATCCAGTTG
1 ATATATATTTAT-AAA-TAAAATATTTATTTATTTAAAAATATCAGAAAAT-GACT-TCCAGGTG
** *
100528 TTTTAAGACTGCCATTTCTT-AATATT-GAAAAATA-AATAAATAA
62 CCTTAAGACT--CATTTCTTCAATATTAAAAAAATATAA-AAATAA
100571 ATAT
1 ATAT
100575 TAAAACAGGA
Statistics
Matches: 93, Mismatches: 10, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
104 6 0.06
105 10 0.11
106 42 0.45
107 23 0.25
108 5 0.05
109 7 0.08
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (104 bp):
ATATATATTTATAAATAAAATATTTATTTATTTAAAAATATCAGAAAATGACTTCCAGGTGCCTT
AAGACTCATTTCTTCAATATTAAAAAAATATAAAAATAA
Done.