genome.fa.s3816.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003816.1 Hibiscus syriacus cultivar Beakdansim tig00008178_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86636

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4866--4920	2	28.0	2	96	3	103	50	0	0	49	1.00
4899--5461	272	2.1	272	91	1	914	39	14	12	34	1.83
5443--5470	2	14.0	2	100	0	56	50	0	0	50	1.00
17759--17815	2	28.5	2	100	0	114	50	0	0	49	1.00
20110--20148	19	2.2	19	86	9	55	58	5	5	30	1.41
20817--20974	21	7.8	20	72	7	86	38	25	17	18	1.92
20941--21094	20	7.7	20	79	7	159	37	25	18	18	1.94
21476--21546	33	2.2	33	92	0	115	11	22	18	47	1.80
21626--21735	21	5.8	20	74	17	108	45	18	24	11	1.83
21619--21735	41	3.1	38	81	14	145	46	17	25	11	1.81
21686--21742	14	3.7	14	75	20	60	43	22	24	8	1.81
21678--21758	33	2.5	33	95	0	144	46	22	22	8	1.78
21754--21851	19	5.7	19	69	22	90	11	22	21	44	1.83
21776--21865	14	5.7	14	68	23	54	11	23	21	44	1.84
21759--21873	33	3.5	33	96	0	212	11	22	19	46	1.81
23565--24215	92	7.1	93	98	1	1258	21	12	19	45	1.84
24263--24391	19	7.3	19	75	17	125	45	28	17	8	1.77
24299--24391	33	2.8	32	91	4	150	46	27	18	7	1.76
24263--24391	52	2.5	52	74	14	140	45	28	17	8	1.77
24387--24521	19	7.6	19	75	16	128	11	19	23	45	1.82
24409--24465	14	3.7	14	77	20	60	10	21	22	45	1.82
24392--24484	33	2.8	33	95	0	168	10	20	21	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26698--26744	24	2.0	24	87	8	69	38	21	14	25	1.92
27425--27694	20	13.5	20	87	1	290	20	17	25	37	1.94
27661--27780	21	5.8	21	81	3	102	22	18	22	36	1.95
27681--27784	42	2.5	42	78	6	120	25	17	23	33	1.96
28497--28537	19	2.2	19	86	0	55	46	31	2	19	1.63
33991--34072	41	2.0	41	100	0	164	41	9	9	39	1.71
35144--35193	26	2.0	25	88	11	75	70	2	0	28	0.99
35423--35455	16	2.1	16	88	5	50	30	0	3	66	1.06
36889--36939	26	2.0	26	88	0	75	49	3	9	37	1.55
37891--37935	22	2.0	22	95	0	81	37	24	4	33	1.76
38750--38917	60	2.8	60	78	2	176	30	20	6	42	1.77
42707--42747	21	1.9	22	90	5	66	53	0	0	46	1.00
42707--42747	19	2.0	21	86	13	59	53	0	0	46	1.00
44080--44173	3	30.7	3	80	8	100	59	0	2	38	1.09
44721--45812	112	9.7	113	89	1	1543	29	19	13	37	1.91
44561--45812	337	3.7	337	88	3	1755	29	19	13	37	1.90
46279--46333	22	2.5	22	96	0	101	36	14	14	34	1.87
48891--49360	83	5.7	82	93	1	712	37	22	12	27	1.91
51488--51513	11	2.4	11	100	0	52	0	7	0	92	0.39
51482--51523	17	2.5	17	84	7	50	0	16	0	83	0.65
53469--53525	26	2.2	26	87	0	78	57	8	12	21	1.61
53585--53626	7	6.0	7	78	10	50	54	14	16	14	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55837--55881	21	2.1	22	87	4	65	53	0	0	46	1.00
57208--57301	3	30.7	3	80	8	100	59	0	2	38	1.09
57519--57950	235	1.8	235	95	1	785	40	9	19	30	1.84
58492--58527	18	2.0	18	88	0	54	38	11	22	27	1.88
61673--61698	3	8.7	3	100	0	52	34	0	0	65	0.93
70628--70676	12	4.2	12	76	5	55	51	0	0	48	1.00
73733--73826	46	2.0	48	83	8	122	34	10	21	34	1.88
74580--74612	16	1.9	18	88	11	52	18	18	9	54	1.69
80414--80525	22	5.3	22	65	15	67	27	18	21	32	1.97
80415--80528	42	2.7	42	91	1	185	26	19	21	33	1.97
80667--80777	42	2.7	42	85	4	136	31	18	18	31	1.95
80324--80993	253	2.7	253	94	1	1175	33	15	17	34	1.91
80920--80987	22	3.2	21	65	23	52	32	19	19	29	1.96
81395--81428	11	3.0	11	86	4	50	41	0	5	52	1.25
84605--84757	80	1.9	80	86	7	222	30	12	24	33	1.92
85741--86224	62	8.0	62	87	3	682	26	24	15	33	1.95
85775--86055	28	9.2	32	61	25	92	26	25	15	32	1.95
86225--86467	88	2.8	88	83	3	283	30	17	21	30	1.96

Tables:   1

The End!