Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003817.1 Hibiscus syriacus cultivar Beakdansim tig00008182_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64981
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Found at i:11613 original size:276 final size:276
Alignment explanation
Indices: 11311--11884 Score: 950
Period size: 276 Copynumber: 2.1 Consensus size: 276
11301 GCGATTTTGA
* * **
11311 TATATATATATATATATATATGTTTATCGTATGAATCTTTCTTATGGTTAATTTCATATTATACT
1 TATATTTATATATATATATATGTTTATCATATGAATCTTTCTTATGACTAATTTCATATTATACT
*
11376 ATTATATGGATTTTATCGTTGTTTAAATATGAAAAGAATTTCTGAATACGATATGTAACCACATA
66 ATTATATGGATTTTATCGTTGTTTAAATATGAAAAGAATTTCTGAATACGACATGTAACCACATA
* *
11441 GATTTGGTCATAACGTCCAAGCCGAGACTAGGGAGTTACATTTGGTGGTATCAGAGCCTTCAATT
131 GATTTGGTCATAACGTCCAAACCGAGACTAGGGAATTACATTTGGTGGTATCAGAGCCTTCAATT
* * * *
11506 TTAAACACTCGGACTGTGGATGAGTCTCAAAATCTGGATTTTCAAGATATTTTAGATATTTTCAA
196 TTAAACACTCGGACTGTAGATGAGTCTAAAAATATGGATTTTCAAGATATTTTAGATAATTTCAA
11571 AAAATCGGGTCAAATT
261 AAAATCGGGTCAAATT
*
11587 TATATTTATATATATATATATGTTTATCATATTAATCTTTCTTATGACTAATTTCATATTATACT
1 TATATTTATATATATATATATGTTTATCATATGAATCTTTCTTATGACTAATTTCATATTATACT
* * * *
11652 ATTATATGGATTTTATTGTTGTTTAAATATGAAAATAATTTCTGAATACTACATGTAACCACCTA
66 ATTATATGGATTTTATCGTTGTTTAAATATGAAAAGAATTTCTGAATACGACATGTAACCACATA
* *
11717 GATTTGGTCATAACGTCCAAACCGGGACTAGGGAATTACATTTGGTGGTATCAGAGCCTTCGATT
131 GATTTGGTCATAACGTCCAAACCGAGACTAGGGAATTACATTTGGTGGTATCAGAGCCTTCAATT
*
11782 TTAAACACTCGGACTGTAGATGAGTCTAAAAATATGGATTTTCAAGATATTTTATATAATTTCAA
196 TTAAACACTCGGACTGTAGATGAGTCTAAAAATATGGATTTTCAAGATATTTTAGATAATTTCAA
*
11847 AAAATCGTGTCAAATT
261 AAAATCGGGTCAAATT
*
11863 TATATATAATATATATATATAT
1 TATAT-TTATATATATATATAT
11885 ATATATATAT
Statistics
Matches: 276, Mismatches: 21, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
276 261 0.95
277 15 0.05
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (276 bp):
TATATTTATATATATATATATGTTTATCATATGAATCTTTCTTATGACTAATTTCATATTATACT
ATTATATGGATTTTATCGTTGTTTAAATATGAAAAGAATTTCTGAATACGACATGTAACCACATA
GATTTGGTCATAACGTCCAAACCGAGACTAGGGAATTACATTTGGTGGTATCAGAGCCTTCAATT
TTAAACACTCGGACTGTAGATGAGTCTAAAAATATGGATTTTCAAGATATTTTAGATAATTTCAA
AAAATCGGGTCAAATT
Found at i:11868 original size:2 final size:2
Alignment explanation
Indices: 11863--11906 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
11853 GTGTCAAATT
11863 TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11904 TA T
1 TA T
11907 GTTTATCGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:17121 original size:2 final size:2
Alignment explanation
Indices: 17114--17186 Score: 139
Period size: 2 Copynumber: 37.0 Consensus size: 2
17104 CGGTTTTCTA
17114 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17155 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17187 GTGTGTGTGT
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.01
2 69 0.99
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:17191 original size:2 final size:2
Alignment explanation
Indices: 17186--17257 Score: 137
Period size: 2 Copynumber: 36.5 Consensus size: 2
17176 TATATATATA
17186 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG -G TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
17227 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
17258 TATATATATA
Statistics
Matches: 69, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.01
2 68 0.99
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:17263 original size:2 final size:2
Alignment explanation
Indices: 17258--17304 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
17248 GTGTGTGTGT
17258 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
17300 TA TA T
1 TA TA T
17305 GTGTGTGTGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:17309 original size:2 final size:2
Alignment explanation
Indices: 17304--17344 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
17294 TATATATATA
17304 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
17345 TTATCGTATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:18461 original size:5 final size:5
Alignment explanation
Indices: 18446--18493 Score: 64
Period size: 5 Copynumber: 9.8 Consensus size: 5
18436 ACTTTGACTT
*
18446 TTTTA -TTTA TTTTA TTTTA TTTTA TTTTA TTTTGA -TTTA TTTTC TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT-A TTTTA TTTTA TTTT
18494 TTTCCTTTCT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
4 5 0.13
5 33 0.85
6 1 0.03
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:18506 original size:25 final size:25
Alignment explanation
Indices: 18456--18520 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
18446 TTTTATTTAT
*
18456 TTTATTTTATTTTATTTTATTTTGA
1 TTTATTTTATTTTATTTCATTTTGA
* *
18481 TTTATTTTCTTTT-TTTCCTTTCTGA
1 TTTATTTTATTTTATTTCATTT-TGA
18506 TTTA--TTATTTTATTT
1 TTTATTTTATTTTATTT
18521 ATTATTATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
23 6 0.18
24 9 0.26
25 19 0.56
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.75
Consensus pattern (25 bp):
TTTATTTTATTTTATTTCATTTTGA
Found at i:18535 original size:12 final size:12
Alignment explanation
Indices: 18447--18532 Score: 51
Period size: 10 Copynumber: 7.2 Consensus size: 12
18437 CTTTGACTTT
18447 TTTATTTATTTTA
1 TTTA-TTATTTTA
18460 -TT-TTATTTTA
1 TTTATTATTTTA
18470 -TT-TTATTTTGA
1 TTTATTATTTT-A
18481 TTTATT-TTCTT-
1 TTTATTATT-TTA
*
18492 TTT-TTCCTTTCTGA
1 TTTATT-ATTT-T-A
18506 TTTATTATTTTA
1 TTTATTATTTTA
18518 TTTATTATTATTA
1 TTTATTATT-TTA
18531 TT
1 TT
18533 ATTTCTTGGA
Statistics
Matches: 61, Mismatches: 1, Indels: 22
0.73 0.01 0.26
Matches are distributed among these distances:
10 19 0.31
11 5 0.08
12 19 0.31
13 10 0.16
14 6 0.10
15 2 0.03
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (12 bp):
TTTATTATTTTA
Found at i:18659 original size:13 final size:13
Alignment explanation
Indices: 18641--18670 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
18631 GAATCGAATG
18641 TTTTAAATTTTAA
1 TTTTAAATTTTAA
*
18654 TTTTAATTTTTAA
1 TTTTAAATTTTAA
18667 TTTT
1 TTTT
18671 CGCAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTAAATTTTAA
Found at i:22549 original size:95 final size:95
Alignment explanation
Indices: 22444--22699 Score: 361
Period size: 95 Copynumber: 2.7 Consensus size: 95
22434 AATATTATAT
* *
22444 ATATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATGGATAA
1 ATATATAATAAAGCTTGAATTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATGGATAA
22509 GATTCAGCTAGCCTGATAAAGGTGATTACA
66 GATTCAGCTAGCCTGATAAAGGTGATTACA
*
22539 ATATATAATAAAGCTTGAATTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGATTTATGGATAA
1 ATATATAATAAAGCTTGAATTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATGGATAA
* ** *
22604 TATTCAGCTAGTTTGATAAAGGTGATTATA
66 GATTCAGCTAGCCTGATAAAGGTGATTACA
** * * *
22634 ATATCTATAA-AATGATATTGATTTGTCCCTCTAGAGCAAATGGTTAAACGGCCCGGCTTTATGG
1 ATA--TATAATAA--AGCTTGAATTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATGG
22698 AT
62 AT
22700 CCAGCTAGCC
Statistics
Matches: 144, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
95 91 0.63
96 2 0.01
97 5 0.03
98 46 0.32
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (95 bp):
ATATATAATAAAGCTTGAATTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATGGATAA
GATTCAGCTAGCCTGATAAAGGTGATTACA
Found at i:24065 original size:80 final size:80
Alignment explanation
Indices: 23834--24748 Score: 1154
Period size: 80 Copynumber: 11.3 Consensus size: 80
23824 TCTATTTGAG
* * *
23834 GCATAGCTCAAGGCGAGAAGGGCTATCTGCCAACAAAAGACCTTTGAGTTCGATTACACTCAGCT
1 GCATAGCTCAAGGCAAGAAGGGTTATCTG-C--C-AAAGACCTTCGAGTTCGATTACACTCAGCT
* *
23899 CCAAGGCACATCATTTACA
62 CAAAGGCACATCATTTGCA
* * *
23918 GCATAGCTCAAGGCGAGAAGGG-CATTTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCT
1 GCATAGCTCAAGGCAAGAAGGGTTATCTG-C--C-AAAGACCTTCGAGTTCGATTACACTCAGCT
23982 CAAAGGCACATCATTTGCA
62 CAAAGGCACATCATTTGCA
* * * * * * * *
24001 ACATAACTCAAGGCAAGAAGTGTTATCTACTAAAGACCTTCAAGTTCGACTACACTCAACTCAAA
1 GCATAGCTCAAGGCAAGAAGGGTTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
24066 GGCACATCATTTGCA
66 GGCACATCATTTGCA
* * ** * * * * *
24081 ACATAGTTCAATTCAAGAAGGGTTATTTGCCAATAAAAGACCTTCGAATTCAATTACACTAATCT
1 GCATAGCTCAAGGCAAGAAGGGTTATCTGCC----AAAGACCTTCGAGTTCGATTACACTCAGCT
* *
24146 CAAAGACATATCATTTGCA
62 CAAAGGCACATCATTTGCA
* * *
24165 GCATAGCTCAAGACAAGAAGGGATATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGTTCAAA
1 GCATAGCTCAAGGCAAGAAGGGTTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
24230 GGCACATCATTTGCA
66 GGCACATCATTTGCA
*
24245 GCATAGCTCAAGGCAAGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
1 GCATAGCTCAAGGCAAGAAGGGTTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
*
24310 GGCACATCATTTGTA
66 GGCACATCATTTGCA
*
24325 GCATAGCTCAAGGCAAGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
1 GCATAGCTCAAGGCAAGAAGGGTTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
24390 GGCACATCATTTGCA
66 GGCACATCATTTGCA
* * *
24405 GC---GCTCAAGCCAAGAAGGGTTATTTGCCAAATACCTTCGAGTTCGATTACACTCAGCTCAAA
1 GCATAGCTCAAGGCAAGAAGGGTTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
24467 GGCACATCATTTGCA
66 GGCACATCATTTGCA
* *
24482 GTATAGCTCAAGGCAAGAAGGGTTATCTGTCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
1 GCATAGCTCAAGGCAAGAAGGGTTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
24547 GGCACATCATTTGCA
66 GGCACATCATTTGCA
* * *
24562 GCATAACTCAAGGCAAGAAGGGCTATCTGCCAAAGACCTTTGAGTTCGATTACACTCAGCTCAAA
1 GCATAGCTCAAGGCAAGAAGGGTTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
*
24627 GGCACATCATTTACA
66 GGCACATCATTTGCA
* * * * * **
24642 GCATAACTCAAGGCGAGAAGGGTTATATGTCATAAAAGACCTTCAAGTTCGATTACACTCAAATC
1 GCATAGCTCAAGGCAAGAAGGGTTATCTG-C--CAAAGACCTTCGAGTTCGATTACACTCAGCTC
* * *
24707 AGAGGCAAATCATATTTACA
63 AAAGGCACATC--ATTTGCA
** *
24727 ATATAGCTCAAGGCATGAAGGG
1 GCATAGCTCAAGGCAAGAAGGG
24749 CTATATGTCA
Statistics
Matches: 738, Mismatches: 80, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
77 72 0.10
80 439 0.59
81 1 0.00
83 111 0.15
84 91 0.12
85 24 0.03
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (80 bp):
GCATAGCTCAAGGCAAGAAGGGTTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
GGCACATCATTTGCA
Found at i:24490 original size:237 final size:241
Alignment explanation
Indices: 23834--24752 Score: 1143
Period size: 237 Copynumber: 3.8 Consensus size: 241
23824 TCTATTTGAG
* *
23834 GCATAGCTCAAGGCGAGAAGGGCTATCTGCCAACAAAAGACCTTTGAGTTCGATTACACTCAGCT
1 GCATAGCTCAAGGCAAGAAGGGCTATCTG-C--CAAAAGACCTTCGAGTTCGATTACACTCAGCT
* * *
23899 CCAAGGCACATCATTTACAGCATAGCTCAAGGCGAGAAGGG-CATTTGCCAACAAAAGACCTTCG
63 CAAAGGCACATCATTTACAGC--AGCTCAAGGCAAGAAGGGTTATTTGCC-AC-AAAGACCTTCG
* * *
23963 AGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAACATAACTCAAGGCAAGAAGTGTTATC
124 AGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGCTATC
* * * * *
24028 TACTAAAGACCTTCAAGTTCGACTACACTCAACTCAAAGGCACATCATTTGCA
189 TGCCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCA
* * ** * * * * * *
24081 ACATAGTTCAATTCAAGAAGGGTTATTTGCCAATAAAAGACCTTCGAATTCAATTACACTAATCT
1 GCATAGCTCAAGGCAAGAAGGGCTATCTGCC---AAAAGACCTTCGAGTTCGATTACACTCAGCT
* * * * * *
24146 CAAAGACATATCATTTGCAGCATAGCTCAAGACAAGAAGGGATATCTG-C-CAAAGACCTTCGAG
63 CAAAGGCACATCATTTACAGC--AGCTCAAGGCAAGAAGGGTTATTTGCCACAAAGACCTTCGAG
* *
24209 TTCGATTACACTCAGTTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTG
126 TTCGATTACACTCAGCTCAAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGCTATCTG
*
24274 CCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGTA
191 CCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCA
24325 GCATAGCTCAAGGCAAGAAGGGCTATCTGCC-AAAGACCTTCGAGTTCGATTACACTCAGCTCAA
1 GCATAGCTCAAGGCAAGAAGGGCTATCTGCCAAAAGACCTTCGAGTTCGATTACACTCAGCTCAA
* * *
24389 AGGCACATCATTTGCAGC-GCTCAAGCCAAGAAGGGTTATTTG-C-CAAATACCTTCGAGTTCGA
66 AGGCACATCATTTACAGCAGCTCAAGGCAAGAAGGGTTATTTGCCACAAAGACCTTCGAGTTCGA
** * *
24451 TTACACTCAGCTCAAAGGCACATCATTTGCAGTATAGCTCAAGGCAAGAAGGGTTATCTGTCAAA
131 TTACACTCAGCTCAAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGCTATCTGCCAAA
24516 GACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCA
196 GACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCA
* *
24562 GCATAACTCAAGGCAAGAAGGGCTATCTGCC-AAAGACCTTTGAGTTCGATTACACTCAGCTCAA
1 GCATAGCTCAAGGCAAGAAGGGCTATCTGCCAAAAGACCTTCGAGTTCGATTACACTCAGCTCAA
* * * * * *
24626 AGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGTTATATGTCATAAAAGACCTTCAAGTT
66 AGGCACATCATTTACAGC--AGCTCAAGGCAAGAAGGGTTATTTGCCA-CAAAGACCTTCGAGTT
** * * * * *
24691 CGATTACACTCAAATCAGAGGCAAATCATATTTACAATATAGCTCAAGGCATGAAGGGCTAT
128 CGATTACACTCAGCTCAAAGGCACATC--ATTTGCAACATAGCTCAAGGCAAGAAGGGCTAT
24753 ATGTCAACAA
Statistics
Matches: 590, Mismatches: 70, Indels: 26
0.86 0.10 0.04
Matches are distributed among these distances:
237 225 0.38
240 65 0.11
241 1 0.00
243 36 0.06
244 144 0.24
245 30 0.05
246 1 0.00
247 84 0.14
248 4 0.01
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.24
Consensus pattern (241 bp):
GCATAGCTCAAGGCAAGAAGGGCTATCTGCCAAAAGACCTTCGAGTTCGATTACACTCAGCTCAA
AGGCACATCATTTACAGCAGCTCAAGGCAAGAAGGGTTATTTGCCACAAAGACCTTCGAGTTCGA
TTACACTCAGCTCAAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGCTATCTGCCAAA
GACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCA
Found at i:24566 original size:317 final size:319
Alignment explanation
Indices: 23834--24719 Score: 1220
Period size: 317 Copynumber: 2.7 Consensus size: 319
23824 TCTATTTGAG
* * *
23834 GCATAGCTCAAGGCGAGAAGGGCTATCTGCCAACAAAAGACCTTTGAGTTCGATTACACTCAGCT
1 GCATAGCTCAAGGCAAGAAGGGATATCTG---AC-AAAGACCTTCGAGTTCGATTACACTCAGCT
* * * *
23899 CCAAGGCACATCATTTACAGCATAGCTCAAGGCGAGAAGGGC-ATTTGCCAACAAAAGACCTTCG
62 CAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTG-C--C-AAAGACCTTCG
* *
23963 AGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAACATAACTCAAGGCAAGAAGTGTTATC
123 AGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATC
* * * * *
24028 TACTAAAGACCTTCAAGTTCGACTACACTCAACTCAAAGGCACATCATTTGCAACATAGTTCAAT
188 TGCAAAAGACCTTCAAGTTCGATTACACTCAACTCAAAGGCACATCATTTGCAAC--AGCTCAAG
* * *
24093 TCAAGAAGGGTTATTTGCCAATAAAAGACCTTCGAATTCAATTACACTAATCTCAAAGACATATC
251 CCAAGAAGGGTTATTTGCC---AAAAGACCTTCGAATTCAATTACACTAAGCTCAAAGACACATC
24158 ATTTGCA
313 ATTTGCA
* * *
24165 GCATAGCTCAAGACAAGAAGGGATATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGTTCAAA
1 GCATAGCTCAAGGCAAGAAGGGATATCTGACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
24230 GGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGAT
66 GGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGAT
* * * *
24295 TACACTCAGCTCAAAGGCACATCATTTGTAGCATAGCTCAAGGCAAGAAGGGCTATCTGCCAAAG
131 TACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCAAAAG
* * *
24360 ACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGC-GCTCAAGCCAAGAAGGG
196 ACCTTCAAGTTCGATTACACTCAACTCAAAGGCACATCATTTGCAACAGCTCAAGCCAAGAAGGG
* * * * *
24424 TTATTTGCC-AAATACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCA
261 TTATTTGCCAAAAGACCTTCGAATTCAATTACACTAAGCTCAAAGACACATCATTTGCA
* * *
24482 GTATAGCTCAAGGCAAGAAGGGTTATCTGTCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
1 GCATAGCTCAAGGCAAGAAGGGATATCTGACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
* *
24547 GGCACATCATTTGCAGCATAACTCAAGGCAAGAAGGGCTATCTGCCAAAGACCTTTGAGTTCGAT
66 GGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGAT
* * *
24612 TACACTCAGCTCAAAGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGTTATATGTCATAA
131 TACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTG-C--AA
* * *
24677 AAGACCTTCAAGTTCGATTACACTCAAATCAGAGGCAAATCAT
193 AAGACCTTCAAGTTCGATTACACTCAACTCAAAGGCACATCAT
24720 ATTTACAATA
Statistics
Matches: 501, Mismatches: 50, Indels: 19
0.88 0.09 0.03
Matches are distributed among these distances:
317 218 0.44
318 1 0.00
320 39 0.08
321 23 0.05
324 120 0.24
325 1 0.00
327 68 0.14
328 5 0.01
331 26 0.05
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (319 bp):
GCATAGCTCAAGGCAAGAAGGGATATCTGACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
GGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGAT
TACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCAAAAG
ACCTTCAAGTTCGATTACACTCAACTCAAAGGCACATCATTTGCAACAGCTCAAGCCAAGAAGGG
TTATTTGCCAAAAGACCTTCGAATTCAATTACACTAAGCTCAAAGACACATCATTTGCA
Found at i:26052 original size:4 final size:4
Alignment explanation
Indices: 26043--26211 Score: 50
Period size: 4 Copynumber: 41.8 Consensus size: 4
26033 TTTATGTATC
*
26043 TTTA TTTA TTTA GTTTA -TTA TGTTA -TTA TGTTA TTT- TTATT TTTA
1 TTTA TTTA TTTA -TTTA TTTA T-TTA TTTA T-TTA TTTA TT-TA TTTA
* * * * *
26088 TTT- TTGA GTTA TTTA TTT- TTAA TTTTA TTCTC CTTA TTTA TTT- TTTAA
1 TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TT-TA TTTA TTTA TTTA TTT-A
* * * * * * * *
26136 TTTT TTTC TTTC TTTA ATT- TTTA TTCA ATTC TTT- TTTC TTT- TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
26181 TTTA TTTTA TTTTA TTTTGA TTTA TTTA TTT
1 TTTA -TTTA -TTTA -TTT-A TTTA TTTA TTT
26212 TTACTCTTTG
Statistics
Matches: 126, Mismatches: 21, Indels: 36
0.69 0.11 0.20
Matches are distributed among these distances:
3 23 0.18
4 65 0.52
5 37 0.29
6 1 0.01
ACGTcount: A:0.19, C:0.05, G:0.04, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:26085 original size:5 final size:6
Alignment explanation
Indices: 26073--26254 Score: 56
Period size: 6 Copynumber: 28.3 Consensus size: 6
26063 TGTTATTATG
*
26073 TTATTT TTATTT TTATTT TTGAGTTAT TTATTT TTAATT TTATTCT CCTTATTT
1 TTATTT TTATTT TTATTT TT-A-TT-T TTATTT TTATTT TTATT-T --TTATTT
* * *
26127 ATT-TTT TAATTT TT-TTCT TT-CTT TAATTT TTATTCAAT TCT-TTT
1 -TTATTT TTATTT TTATT-T TTATTT TTATTT TTATT---T T-TATTT
* * *
26171 TTCTTT TT-TAT TTA-TT TTA-TT TTATTT TGATTTAT TTATTT TTACTCTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTA-TT-T TTATTT TTA-T-TT
*
26220 TGATTT ATTA-TT TTAGTATT TTATTT ATTATTT TT
1 TTATTT -TTATTT TTA-T-TT TTATTT -TTATTT TT
26255 TGTTCTTAGA
Statistics
Matches: 136, Mismatches: 15, Indels: 50
0.68 0.07 0.25
Matches are distributed among these distances:
5 22 0.16
6 64 0.47
7 21 0.15
8 16 0.12
9 12 0.09
10 1 0.01
ACGTcount: A:0.19, C:0.05, G:0.03, T:0.73
Consensus pattern (6 bp):
TTATTT
Found at i:26130 original size:25 final size:26
Alignment explanation
Indices: 26096--26144 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26086 TATTTTTGAG
26096 TTATTTA-TTTTTAATTTTATTCTCC
1 TTATTTATTTTTTAATTTTATTCTCC
*
26121 TTATTTATTTTTTAATTTTTTTCT
1 TTATTTATTTTTTAATTTTATTCT
26145 TTCTTTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.73
Consensus pattern (26 bp):
TTATTTATTTTTTAATTTTATTCTCC
Found at i:26157 original size:26 final size:24
Alignment explanation
Indices: 26103--26213 Score: 71
Period size: 26 Copynumber: 4.1 Consensus size: 24
26093 GAGTTATTTA
*
26103 TTTTTAATTTTATTCTCCTTATTTA-T
1 TTTTTAATTTT-TT-T-CTTTTTTATT
26129 TTTTTAATTTTTTTCTTTCTTTAATT
1 TTTTTAATTTTTTTCTTT-TTT-ATT
26155 TTTATTCAATTCTTTTTTCTTTTTTATT
1 TTT-TT-AA-T-TTTTTTCTTTTTTATT
* *
26183 TATTTTATTTTATTTTGATTTATTTATT
1 T-TTTTAATTT-TTTT-CTTT-TTTATT
26211 TTT
1 TTT
26214 ACTCTTTGAT
Statistics
Matches: 71, Mismatches: 3, Indels: 21
0.75 0.03 0.22
Matches are distributed among these distances:
23 3 0.04
24 4 0.06
25 5 0.07
26 20 0.28
27 8 0.11
28 15 0.21
29 6 0.08
30 10 0.14
ACGTcount: A:0.17, C:0.07, G:0.01, T:0.75
Consensus pattern (24 bp):
TTTTTAATTTTTTTCTTTTTTATT
Found at i:26233 original size:20 final size:18
Alignment explanation
Indices: 26187--26253 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 18
26177 TTTATTTATT
26187 TTATTTTATTTTGATTTA
1 TTATTTTATTTTGATTTA
26205 TTTATTTTTACTCTTTGATTTA
1 -TTA-TTTTA-T-TTTGATTTA
*
26227 TTATTTTAGTATTTTATTTA
1 TTATTTTA-T-TTTGATTTA
26247 TTATTTT
1 TTATTTT
26254 TTGTTCTTAG
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
19 3 0.07
20 26 0.62
21 4 0.10
22 9 0.21
ACGTcount: A:0.21, C:0.03, G:0.04, T:0.72
Consensus pattern (18 bp):
TTATTTTATTTTGATTTA
Found at i:26405 original size:6 final size:6
Alignment explanation
Indices: 26365--26397 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
26355 AATCGAATGT
26365 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTT
26398 TTAATTTTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (6 bp):
TTTAAA
Found at i:35311 original size:23 final size:23
Alignment explanation
Indices: 35281--35326 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
35271 CTAAAACCCG
35281 AAGAATGCAACGGTGCAACTTCA
1 AAGAATGCAACGGTGCAACTTCA
* *
35304 AAGAATGCATCGGTGCACCTTCA
1 AAGAATGCAACGGTGCAACTTCA
35327 TATTGTATCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.20
Consensus pattern (23 bp):
AAGAATGCAACGGTGCAACTTCA
Found at i:39227 original size:22 final size:21
Alignment explanation
Indices: 39185--39224 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
39175 GAGATTATTT
39185 TCATTTTTCAATTTTAAAATA
1 TCATTTTTCAATTTTAAAATA
**
39206 TCATTTTTGTATTTTAAAA
1 TCATTTTTCAATTTTAAAA
39225 ATAATTTCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAATA
Found at i:47625 original size:5 final size:5
Alignment explanation
Indices: 47615--47651 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
47605 TTTAGGTTCT
*
47615 AATTA AATTA AATTA AA-T- AATTT AATTA AATTA AATT
1 AATTA AATTA AATTA AATTA AATTA AATTA AATTA AATT
47652 GGGAAGTTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
3 2 0.07
4 2 0.07
5 25 0.86
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
AATTA
Found at i:47641 original size:18 final size:18
Alignment explanation
Indices: 47614--47650 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
47604 ATTTAGGTTC
47614 TAATTAAATTAAATTAAA
1 TAATTAAATTAAATTAAA
*
47632 TAATTTAATTAAATTAAA
1 TAATTAAATTAAATTAAA
47650 T
1 T
47651 TGGGAAGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TAATTAAATTAAATTAAA
Found at i:47915 original size:5 final size:5
Alignment explanation
Indices: 47905--47941 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
47895 TTTAGGTTCT
*
47905 AATTA AATTA AATTA AA-T- AATTT AATTA AATTA AATT
1 AATTA AATTA AATTA AATTA AATTA AATTA AATTA AATT
47942 GGGAAGTTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
3 2 0.07
4 2 0.07
5 25 0.86
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
AATTA
Found at i:47931 original size:18 final size:18
Alignment explanation
Indices: 47904--47940 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
47894 ATTTAGGTTC
47904 TAATTAAATTAAATTAAA
1 TAATTAAATTAAATTAAA
*
47922 TAATTTAATTAAATTAAA
1 TAATTAAATTAAATTAAA
47940 T
1 T
47941 TGGGAAGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TAATTAAATTAAATTAAA
Found at i:48644 original size:126 final size:123
Alignment explanation
Indices: 48412--48662 Score: 335
Period size: 126 Copynumber: 2.0 Consensus size: 123
48402 ATTCAGTCTT
* **
48412 TATTATTTATATAATCATTTGGTCCTAAATTAAATAGAATTCAATAAATAATCATTTAATTAGGA
1 TATTATTTATATAATCATTTGGTCCTAAATTAAATAAAATTCAATAAATAATCATTTAACCAGGA
** * *
48477 TCTGACATGTGTTGGCACATGATCATGACACGTGTCATTGGTGACACTTGTCACCACC
66 TCTGACATGTGTTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACC
* *
48535 TATTATTTATATGCTATCAATTTGGTCCTAAATT-AATAAAATTTAATAAATTAATCATTTAACC
1 TATTATTTATAT--AATC-ATTTGGTCCTAAATTAAATAAAATTCAATAAA-TAATCATTTAACC
* * *
48599 AGGATCTGACATGTGTTAACACATGATCAT-ATATATGTTATTTGGTGACACATGTCACCACC
62 AGGATCTGACATGTGTTAACACATGATCATGACACATGTCA-TTGGTGACACATGTCACCACC
48661 TA
1 TA
48663 ATTAGAAGAA
Statistics
Matches: 111, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
123 12 0.11
125 23 0.21
126 76 0.68
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.37
Consensus pattern (123 bp):
TATTATTTATATAATCATTTGGTCCTAAATTAAATAAAATTCAATAAATAATCATTTAACCAGGA
TCTGACATGTGTTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACC
Found at i:49146 original size:16 final size:18
Alignment explanation
Indices: 49125--49158 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
49115 ATTTCTTATT
49125 AAAAATA-AAAT-ATTCA
1 AAAAATATAAATGATTCA
49141 AAAAATATAAATGATTCA
1 AAAAATATAAATGATTCA
49159 TACATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATATAAATGATTCA
Found at i:50028 original size:18 final size:18
Alignment explanation
Indices: 49994--50077 Score: 68
Period size: 18 Copynumber: 4.7 Consensus size: 18
49984 TTATTATATT
49994 AATTACTTATTAA-ATTAAA
1 AATTA-TTA-TAATATTAAA
50013 AATTATTATAATATTAAA
1 AATTATTATAATATTAAA
* * * *
50031 AATGATAATATTA-AAATA
1 AATTATTATAATATTAA-A
*
50049 AAATATTAT-ATATT-AA
1 AATTATTATAATATTAAA
50065 AATTATTATAATA
1 AATTATTATAATA
50078 AATTTTAATA
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
16 9 0.18
17 11 0.22
18 26 0.51
19 5 0.10
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (18 bp):
AATTATTATAATATTAAA
Found at i:50061 original size:20 final size:19
Alignment explanation
Indices: 50001--50067 Score: 66
Period size: 20 Copynumber: 3.5 Consensus size: 19
49991 ATTAATTACT
*
50001 TATTAAATTAAAAATTAT-
1 TATTAAAATAAAAATTATA
* *
50019 TA-TAATATTAAAAATGATAA
1 TATTAA-AATAAAAATTAT-A
50039 TATTAAAATAAAATATTATA
1 TATTAAAATAAAA-ATTATA
50059 TATTAAAAT
1 TATTAAAAT
50068 TATTATAATA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
17 3 0.07
18 13 0.32
20 18 0.44
21 7 0.17
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.40
Consensus pattern (19 bp):
TATTAAAATAAAAATTATA
Found at i:50073 original size:16 final size:16
Alignment explanation
Indices: 49960--50074 Score: 55
Period size: 16 Copynumber: 7.0 Consensus size: 16
49950 AGTAATTTTT
*
49960 TATTAAAA-TATGA-A
1 TATTAAAATTATTATA
*
49974 TATT-ACATTATTATTA
1 TATTAAAATTATTA-TA
49990 TATT--AATTACTTATTA
1 TATTAAAATTA-TTA-TA
*
50006 AATTAAAAATTATTATAA
1 TATT-AAAATTATTAT-A
*
50024 TATTAAAA--ATGATAA
1 TATTAAAATTATTAT-A
50039 TATTAAAATAAAATATTATA
1 TATTAAAAT----TATTATA
50059 TATTAAAATTATTATA
1 TATTAAAATTATTATA
50075 ATAAATTTTA
Statistics
Matches: 80, Mismatches: 7, Indels: 26
0.71 0.06 0.23
Matches are distributed among these distances:
13 2 0.03
14 8 0.10
15 18 0.22
16 21 0.26
17 5 0.06
18 7 0.09
19 5 0.06
20 10 0.12
21 4 0.05
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (16 bp):
TATTAAAATTATTATA
Found at i:55363 original size:23 final size:23
Alignment explanation
Indices: 55337--55397 Score: 104
Period size: 23 Copynumber: 2.7 Consensus size: 23
55327 CTCGTATAAA
*
55337 TGCACCAAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
55360 TGCACCGAAGTGCCGCGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
55383 TGCACCGAAGTGCCA
1 TGCACCGAAGTGCCA
55398 TATAAAATGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:60342 original size:22 final size:23
Alignment explanation
Indices: 60309--60365 Score: 80
Period size: 22 Copynumber: 2.5 Consensus size: 23
60299 AACTCGTATA
*
60309 TGCACCAAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
* *
60332 TGCA-CGAAGTGCCTCTTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
60354 TGCACCGAAGTG
1 TGCACCGAAGTG
60366 TCATATAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 19 0.63
23 11 0.37
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.21
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:61822 original size:20 final size:20
Alignment explanation
Indices: 61797--61845 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
61787 TTCCCCTTGA
61797 AGTGCATCGGTACATTCTAC
1 AGTGCATCGGTACATTCTAC
61817 AGTGCATCGGTACATTCTAC
1 AGTGCATCGGTACATTCTAC
61837 AGTGCATCG
1 AGTGCATCG
61846 ATGCATTCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (20 bp):
AGTGCATCGGTACATTCTAC
Found at i:61852 original size:20 final size:20
Alignment explanation
Indices: 61797--61853 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
61787 TTCCCCTTGA
*
61797 AGTGCATCGGTACATTCTAC
1 AGTGCATCGATACATTCTAC
*
61817 AGTGCATCGGTACATTCTAC
1 AGTGCATCGATACATTCTAC
*
61837 AGTGCATCGATGCATTC
1 AGTGCATCGATACATTC
61854 CTTAACATGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (20 bp):
AGTGCATCGATACATTCTAC
Done.