genome.fa.s3818.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003818.1 Hibiscus syriacus cultivar Beakdansim tig00008184_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98264

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8018--8054	2	18.5	2	100	0	74	48	0	0	51	1.00
10803--10842	21	2.0	21	95	5	73	27	12	5	55	1.58
14173--14207	9	3.9	9	92	0	52	20	34	11	34	1.88
16059--16391	111	3.0	111	95	0	603	45	10	8	35	1.69
16537--16577	20	2.1	19	86	4	55	41	0	24	34	1.55
16696--16800	50	2.1	50	82	3	122	32	25	23	18	1.97
21757--21916	80	2.0	80	98	0	311	20	16	16	46	1.84
27530--27629	4	27.0	4	70	15	72	50	0	0	50	1.00
27530--27629	6	18.0	6	77	15	72	50	0	0	50	1.00
27530--27629	52	2.0	50	92	4	164	50	0	0	50	1.00
28118--28166	21	2.3	21	86	13	66	10	2	6	81	0.94
28560--28597	16	2.3	17	86	4	51	36	5	0	57	1.21
28679--28744	17	3.9	16	79	14	71	16	4	1	77	1.01
28682--28795	11	10.1	11	71	19	58	18	3	3	74	1.10
28685--28735	19	2.8	18	88	5	68	17	5	0	76	0.98
28730--28794	24	2.8	22	81	13	60	20	1	6	72	1.14
28932--28967	15	2.4	15	90	0	54	11	5	2	80	0.98
35727--35765	17	2.2	18	86	13	55	38	5	0	56	1.22
36800--36873	27	3.1	23	77	16	71	24	5	0	70	1.08
36831--36879	3	16.7	3	91	4	82	30	2	0	67	1.02
36895--36924	12	2.5	12	88	0	51	23	6	0	70	1.11
37395--37433	17	2.4	17	86	4	53	35	7	0	56	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37426--37481	21	2.7	21	83	5	69	12	3	1	82	0.88
37427--37491	21	3.2	20	80	6	67	9	4	3	83	0.90
37432--37492	26	2.3	25	78	10	68	9	4	3	81	0.94
37530--37655	15	8.6	14	70	25	68	18	3	3	73	1.14
37530--37655	10	12.8	10	66	20	61	18	3	3	73	1.14
37531--37595	24	2.6	25	78	9	71	13	6	4	75	1.15
37528--37595	19	3.5	18	75	15	55	13	5	4	76	1.12
37586--37644	23	2.7	23	70	15	61	22	1	3	72	1.08
41423--41499	21	3.7	21	78	3	75	32	18	12	36	1.89
42098--42159	32	1.9	32	84	12	83	25	0	11	62	1.28
42135--42263	66	2.0	65	87	4	188	27	0	14	57	1.38
42079--42229	76	2.0	76	85	1	187	27	0	13	58	1.36
42854--42904	19	2.7	18	82	8	66	23	3	1	70	1.14
45877--45928	19	2.7	19	80	14	61	21	7	0	71	1.11
45884--45929	14	3.2	14	84	3	65	19	6	0	73	1.04
45877--45932	5	11.4	5	79	11	62	21	7	0	71	1.09
47883--47990	24	4.3	24	67	17	85	26	0	13	59	1.35
47847--47990	76	1.9	76	85	7	204	28	1	11	58	1.42
48655--48703	19	2.6	18	81	9	62	20	4	2	73	1.10
48734--48779	16	2.6	18	77	16	51	32	4	0	63	1.14
52249--52301	22	2.5	22	75	9	56	22	16	13	47	1.82
52249--52328	21	3.8	21	75	6	63	28	13	12	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65498--65544	19	2.4	20	85	7	78	38	4	25	31	1.75
65910--66146	20	11.7	20	71	12	126	24	17	24	32	1.96
65931--66005	21	3.6	21	71	10	73	18	14	26	40	1.90
65917--66027	41	2.7	41	95	0	204	20	14	27	37	1.91
65973--66167	61	3.2	60	69	11	155	24	17	23	34	1.96
66051--66309	142	1.8	140	86	3	376	28	16	24	30	1.96
66253--66308	19	2.9	19	91	0	94	21	14	30	33	1.93
67503--67615	35	3.2	34	86	5	154	34	0	22	42	1.60
69192--69282	19	4.4	19	72	18	76	36	4	26	32	1.76
69514--69538	6	4.2	6	100	0	50	0	16	48	36	1.46
69679--69811	20	6.7	20	67	13	67	27	18	25	28	1.98
69822--69862	21	2.0	21	100	0	82	36	14	24	24	1.93
69897--69944	19	2.5	19	89	3	69	20	14	29	35	1.93
70591--70647	24	2.3	24	88	8	80	43	3	0	52	1.18
70673--70761	31	2.8	33	76	11	96	35	4	5	53	1.45
70899--70967	31	2.2	31	82	5	77	44	18	13	23	1.84
78771--78823	21	2.5	21	87	0	79	20	24	18	35	1.95
78813--78885	20	3.7	20	90	0	110	39	21	17	20	1.92
78816--78903	40	2.2	40	84	8	108	39	22	17	20	1.92
79084--79137	22	2.5	22	93	0	90	22	40	12	24	1.89
79084--79149	22	3.0	22	86	4	80	25	37	13	22	1.91
79516--79637	20	6.5	20	80	11	98	13	18	25	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79486--79639	72	2.1	72	91	1	245	12	17	24	45	1.83
79536--79638	52	1.9	54	94	3	183	11	17	25	45	1.82
81532--81709	20	9.5	20	75	17	141	42	20	19	18	1.90
81756--81842	20	4.3	20	92	0	111	22	19	21	35	1.96
81776--81853	40	2.0	40	81	0	93	21	17	20	39	1.92
83712--83746	14	2.5	14	85	0	52	31	0	20	48	1.50
83874--83927	14	3.5	14	73	22	54	42	20	24	12	1.87
83854--83949	33	2.9	34	85	3	131	41	19	23	14	1.89
83985--84048	33	1.9	33	83	0	83	15	20	15	48	1.81
84031--84119	20	4.4	20	92	2	135	15	20	25	38	1.92
84031--84119	40	2.2	40	93	0	151	15	20	25	38	1.92
86510--86563	24	2.2	24	86	0	72	40	18	16	24	1.90
87403--87510	20	5.4	20	90	0	162	25	19	25	28	1.99
87497--87609	20	5.7	20	89	0	163	21	20	19	38	1.93
87404--87590	60	3.1	60	83	6	193	24	19	22	33	1.97
87403--87609	40	5.2	40	82	5	163	24	19	22	33	1.97
87606--87651	21	2.2	21	92	0	74	39	17	26	17	1.91
96714--96815	44	2.4	42	82	8	118	32	12	22	32	1.92
96714--96806	41	2.2	41	84	9	116	33	12	23	30	1.92

Tables:   1

The End!