Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000382.1 Hibiscus syriacus cultivar Beakdansim tig00000698_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77621

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1876--2117
99
2.4
99
85
6
317
35
24
18
21
1.96
4232--4258
13
2.1
13
100
0
54
7
7
0
85
0.75
10933--10971
16
2.4
16
95
0
69
51
17
5
25
1.66
27885--27913
12
2.4
12
100
0
58
24
13
17
44
1.85
30493--30566
16
4.6
16
70
21
57
51
16
12
20
1.76
31239--31274
18
2.0
18
89
10
56
58
0
5
36
1.22
31239--31275
19
2.0
18
89
5
56
59
0
5
35
1.20
34063--34131
23
3.0
23
89
0
102
26
26
27
20
1.99
34147--34359
103
2.1
103
91
1
347
36
21
13
28
1.91
36046--36090
21
2.1
21
83
0
54
17
24
26
31
1.97
39078--39146
23
3.0
23
86
0
93
27
26
26
20
1.99
39162--39374
103
2.1
103
94
0
372
36
22
14
27
1.92
41061--41105
21
2.1
21
87
0
63
15
24
28
31
1.96
47402--47455
27
2.0
27
85
0
72
25
18
12
42
1.86
50148--50184
2
18.5
2
100
0
74
48
0
0
51
1.00
50464--50828
4
91.2
4
99
0
721
25
0
24
50
1.50
50874--50902
2
14.5
2
100
0
58
51
0
0
48
1.00
52872--52997
32
3.9
32
71
10
103
39
27
8
23
1.84
58884--59010
42
3.0
42
79
4
121
24
26
18
29
1.98
61048--61101
18
3.1
18
81
5
58
33
0
1
64
1.04
61794--61855
30
2.1
30
93
0
106
30
14
17
37
1.90
64264--64315
26
1.9
26
84
7
68
34
7
1
55
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65789--65823
18
2.1
17
89
10
54
77
0
8
14
0.99
67202--67256
23
2.4
23
100
0
110
25
21
9
43
1.82
67519--68602
139
7.8
139
87
0
1564
26
19
17
36
1.94
68856--69052
95
2.0
96
82
8
238
41
9
17
31
1.82
68873--69089
100
2.2
94
80
10
233
42
9
16
31
1.80
69273--69459
105
1.8
101
85
7
263
38
9
18
33
1.83
70234--70303
29
2.4
29
100
0
140
28
4
24
42
1.73
70963--71012
27
1.9
27
84
8
68
4
22
2
72
1.12
70994--71033
21
1.9
21
84
0
53
5
20
2
72
1.15
71048--71076
14
2.0
15
93
6
51
6
17
0
75
1.01
74929--74967
4
9.8
4
82
0
51
74
2
5
17
1.12
76690--76746
29
2.0
29
82
0
69
21
8
8
61
1.52

Tables:   1

The End!